BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478962
Length=816
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15300.1 | Symbols: | VQ motif-containing protein | chr3:51... 1279 0.0
> AT3G15300.1 | Symbols: | VQ motif-containing protein | chr3:5147405-5148305
REVERSE LENGTH=901
Length=901
Score = 1279 bits (692), Expect = 0.0
Identities = 782/823 (95%), Gaps = 15/823 (2%)
Strand=Plus/Plus
Query 1 AAAAGATCAATGGAGATTTCAACAAACCCACcatcatcttcttcatcatctgcttcatct 60
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 87 AAAACATCAATGGAGATTTCAACAAACCCACCATCATCTTCTTCATCATCTGTTTCATCT 146
Query 61 tccattatcaatggatctttacatcatcatcacatcatAACTAGATCTGATCATTATCCA 120
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 147 TCCATTATCAATGGATCTTT--A-CATCATCACATCATAACTAGATCTGATCATTATCCA 203
Query 121 ACAACTTTTGTTCAAGCAGACACTTCTTCTTTCAAACAAGTCGTTCAGATGCTCACCGGA 180
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 204 ACAACTTTTGTTCAAGCTGACTCTTCTTCTTTCAAACAAGTCGTTCAGATGCTCACCGGA 263
Query 181 AGCTCTTCCCCGAGATCTCCTGACTCGCCGCGTCCTCCGACGACTCCTTCCGGCAAGGGT 240
||||| ||||| |||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 264 AGCTCCTCCCCAAGATCTCCAGACTCTCCGCGTCCTCCGACGACTCCTTCCGGCAAGGGT 323
Query 241 AATTTCGTGATTCCACCGATCAAAACCGCACAACCGAAGAAACATTCTGGTAACAAACTT 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 324 AATTTTGTGATTCCACCGATCAAAACCGCACAACCGAAGAAACATTCTGGTAACAAACTT 383
Query 301 TACGAGAGAAGATCACACGGCGGATTTAACAACAACCTCAAGAACAGTCTCATGATTAAC 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 384 TACGAGAGAAGATCACACGGCGGATTTAACAACAACCTCAAGAACAGTCTCATGATTAAT 443
Query 361 ACACTCATGATCGGTGGTGGTGGTGGCGCCGGAAGTCCAAGATTCTCGCCGAGAAATCAG 420
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 444 ACACTCATGATC---GGTGGTGGTGGCGCCGGAAGTCCAAGATTCTCGCCGAGAAATCAG 500
Query 421 GAGATTTTGTCGCCTAGCTGTCTTGATTTCCCCAAGCTTGCACTTAACAGTCCCGTGACG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 GAGATTTTGTCGCCTAGCTGTCTTGATTTCCCCAAGCTTGCACTTAACAGTCCCGTGACG 560
Query 481 CCGTTAAAGCAGGGAAACAACGGAAACGACGGCGATCCTTTCGATAAGATGTCGCCATTA 540
|||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||
Sbjct 561 CCGTTAAAGCAGGGAACCAACGGAAACGAAGGCGATCCTTTCGACAAGATGTCGCCATTA 620
Query 541 TCGGAGGAAGAGAGAGCTATCGCTGACAAGGGTTATTACCTGCACCAGTCTCCGATTTCA 600
|||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||
Sbjct 621 TCGGAGGAAGAGAGAGGTATCGCAGACAAGGGTTATTACCTGCACCGGTCTCCGATTTCA 680
Query 601 ACTCCGAGAGATTCTGAGCCGCAGCTTCTGCCTCTGTTCCCGGTGACTTCTCCGAGAGTA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 681 ACTCCGAGAGATTCTGAGCCGCAGCTTCTGCCTCTGTTCCCGGTGACTTCTCCGAGATTA 740
Query 661 TCGCCGGAGATGTAGGCTGAGAAAC-TGTTTATAAATTTTTACTGCGACTGTAATTTTCG 719
||||||||||||||| |||||| || ||||||||||||||||||||||||| || ||||
Sbjct 741 TCGCCGGAGATGTAGACTGAGAGACCTGTTTATAAATTTTTACTGCGACTGGAACTTTCA 800
Query 720 TTTCTTTTATAAACTTTGCTCTGCTTTTAATATCT--TTATCCCCTGCTTCGGCTTATTA 777
|||||||| ||| |||||||||||||||||||| | ||||||| || ||||||||||||
Sbjct 801 TTTCTTTTTTAA-CTTTGCTCTGCTTTTAATATATCGTTATCCC-TGTTTCGGCTTATTA 858
Query 778 --CTATTTACTT-AAA-TAGTAAAATATGTTAATTAAGTTTTT 816
|||||||||| ||| |||||||||||| |||||||||||||
Sbjct 859 TACTATTTACTTTAAAATAGTAAAATATGCTAATTAAGTTTTT 901
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39735210277
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5