BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478964
Length=2226
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15340.1 | Symbols: PPI2 | proton pump interactor 2 | chr3:5... 2996 0.0
AT5G36690.1 | Symbols: | AT5G36690 and AT5G36780 represent ide... 1110 0.0
AT5G36780.1 | Symbols: | AT5G36780 and AT5G36690 represent ide... 1110 0.0
> AT3G15340.1 | Symbols: PPI2 | proton pump interactor 2 | chr3:5159698-5162841
REVERSE LENGTH=2293
Length=2293
Score = 2996 bits (1622), Expect = 0.0
Identities = 2052/2252 (91%), Gaps = 59/2252 (3%)
Strand=Plus/Plus
Query 1 tttttttctctctttagatttca-------tttttttCCCAGTAATCAAATTAAAATTTG 53
||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||
Sbjct 67 TTTTTTTCTCTCTTTAGATTTCATTTCTTTTTTTTTTTCCAGTAATCAAATTAAACTTTG 126
Query 54 CCTCTTTCAGTCC-AAAACCCTGAGATTTTTGGGAGAATCTCTGTGACACTCATTTCTTT 112
|||| ||||| || ||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 127 CCTC-TTCAGCCCAAAAACCCTGAGATTTTTGGGAGAATCTGTGTGACACTCATTTC-TT 184
Query 113 CTTTCTAGGAAAGAATCCAAAATGGGTTCGGAGATTATACTCTGTGATGGCTTCGAGGTG 172
||||||||||||||||| ||||||||| || | |||||||||| ||| ||||||||||||
Sbjct 185 CTTTCTAGGAAAGAATCAAAAATGGGTGCGCAAATTATACTCTCTGAAGGCTTCGAGGTG 244
Query 173 GTTCCTCCGCC---GATAAACGATTTGATACTCTTCGGAAG-AGGCCAATCTGTATCAAG 228
||||||||||| ||| ||||||||| ||||||||||||| | |||||||||||||||
Sbjct 245 GTTCCTCCGCCGGAGATGAACGATTTGGTACTCTTCGGAAGCA-ACCAATCTGTATCAAG 303
Query 229 TTGCGATGTATCAACGATCACTACCGAAGAAGACGGCACTGTTTTTTCCGGTGATAGTTC 288
|||||||||||||||| |||| ||| ||||| ||||||||||||||||||||||||||
Sbjct 304 TTGCGATGTATCAACGGTCACCACC---GAAGATGGCACTGTTTTTTCCGGTGATAGTTC 360
Query 289 GCCGGGAGGTGCAGCTGAAGAGGATTGGCCTGAAGATAAATCTTTATCGTTT-TACTTTG 347
|||||||||||| |||||||||||| |||||||| ||| |||| || ||| |||||||
Sbjct 361 ACCGGGAGGTGCAACTGAAGAGGATTTCCCTGAAGAGAAACCTTTCTC-TTTCTACTTTG 419
Query 348 TTAAGCAACCAGCTTACGATGATCCCGAGATCCAAGCCAAGATCGATGAAGCTGGTCATG 407
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 420 TTAAGCAACCAGCTTACGATGATCCCGAGATCAAAGCTAAGATCGATGAAGCTGGTCATG 479
Query 408 AGATTAAGC-ACTGTAATCAACTCCGTATTGGTGTCTCCAGTGCTCAGAAATCCGAAAAG 466
||||||| | | | |||| || ||| |||| |||||||| ||||||| |||||||||||
Sbjct 480 AGATTAATCGA-TATAATAAAGACCGAATTGTTGTCTCCAATGCTCAGGAATCCGAAAAG 538
Query 467 GCTGAGATTTCGTCTTTGTTT--TCACATATGGTGAGTTTGACTCCTAAATCAGAAGGAT 524
|||||||||| |||| ||||| ||| | ||| ||||||| | ||||||| |||||||
Sbjct 539 GCTGAGATTTTGTCTCTGTTTGGTCA-A-ATGAAGAGTTTGGTTTCTAAATCGGAAGGAT 596
Query 525 ATAGAGTGGTTTTTGAAGAGAAGAAGAGGGAATTTGATACTCTACAAGAAGCTCTACGGA 584
||||||||||| ||||||||||||||| |||||||||| ||||||| ||| |||||||||
Sbjct 597 ATAGAGTGGTTATTGAAGAGAAGAAGATGGAATTTGATGCTCTACATGAATCTCTACGGA 656
Query 585 ATCTCCGGTGCTCTACTAGTGATCAACTTTGTTTTTCAAAGGAGGAACTCGATCATCTTA 644
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 657 ATCTCCGGTGCTCTACTAGTGATCAACTTTGTTTTTCGAAGGAGGAGCTCGATCATCTTA 716
Query 645 TGTATATAGCTCATTATCAGATTGAACATGGTAGCATTGGTTTGGAGGAAGAAGATTGGG 704
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 717 TTTATATAGCTCATTATCAGATTGAACATGGTAGCATTGGTTTTGAGGAAGAAGATTGGG 776
Query 705 TGCTTAAAGAGACCGAGAAGCCTGATGGGATAGTTCTAAGTGAGGATTCTCTTGCGGAGA 764
||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 777 TGCTTAAGGAGACTGAGAAGGCTGATGGGATAGTTCTAAGTGAGGATTCTCTTGCGGAGA 836
Query 765 AAGAAGCTTCCATAAACCGTGTTAAGTCTAAGGCCGTGGAATTGTATCAAGTAAAGAAGG 824
||||||| |||||||||||||| ||||||| ||| ||||||||| || ||||||||||||
Sbjct 837 AAGAAGCCTCCATAAACCGTGTCAAGTCTATGGCTGTGGAATTGAATGAAGTAAAGAAGG 896
Query 825 AGCTCGATGCGATTACATGGAAGATAAACC-TCTTG-GCTGAAAAAATGGGGAAGAGTCG 882
|||| ||||||||||||||||||||||||| | ||| | ||| ||| ||||||||||||
Sbjct 897 AGCTTGATGCGATTACATGGAAGATAAACCAT-TTGAG-TGACAAAGTGGGGAAGAGTCA 954
Query 883 GAACAAGATCAAGATTTTGGATGTAGAACTGGCACACATACTTGAG-AAGAGGGACAGAT 941
|||||| ||| | ||||||||||| || |||||||||||||||| || ||||||||||
Sbjct 955 GAACAACCTCAGGGTTTTGGATGTAAAAAAGGCACACATACTTGAGGAA-AGGGACAGAT 1013
Query 942 CCTATGAAAGGATTAGGATGTTGAGGATACAACGAGACAAAGGGAAAGATGCCTTTTTCG 1001
||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||| |
Sbjct 1014 CCTATGAAAGGATTAAGATGTTGAGAATACAACGAGACAAAGGGAAAGCTGCCTTTTACC 1073
Query 1002 AGAGCCTTCCTGTTATGAGGAAAGCTAAAGAATTGGCTGCTTCTGGAAATGTTCGAGATC 1061
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 1074 AGAGCCTTCCTGTTATGAGGAAAGCTAGAGAATTGGCTGCTTCTGGAAATGTTAGAGATC 1133
Query 1062 TTGAAGTGTTTGCCAACTCTGAGGTTGAAAGATTCATGACTCATTGGAATGATGACAAGG 1121
||||||||||||||| ||| |||| ||| |||||||||||||| ||||||||||||||||
Sbjct 1134 TTGAAGTGTTTGCCAGCTCCGAGGCTGATAGATTCATGACTCAATGGAATGATGACAAGG 1193
Query 1122 CTTTTAGGGATGATTACGTAAAAAGAATCTCGCTTTCACTTTGTGAAAGACAGCTGAACC 1181
|||||||||||||||||||||||||||| || | |||||| |||||||||||||||||||
Sbjct 1194 CTTTTAGGGATGATTACGTAAAAAGAATATCTCCTTCACTATGTGAAAGACAGCTGAACC 1253
Query 1182 AAGATGGCCGGATTAAAGATCCTGAAGTTCAGGTTGTTGGGGAAAAGCAAGTACCGGTTA 1241
||||||| |||||||||||||||||||||||||||||| |||||||| |||| |||||||
Sbjct 1254 AAGATGGTCGGATTAAAGATCCTGAAGTTCAGGTTGTTTGGGAAAAGAAAGTGCCGGTTA 1313
Query 1242 AGACTATGAAGGGAGGCGAGAAGGTTCACAAGACGAATAGAGAAGATCCCAGCTCCAACT 1301
|| | | |||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1314 AG-----G--G--AGGCGAGAAGGTTCACGAGACGAATAGAGAAGATTCCAGCTCCAACT 1364
Query 1302 TGTTTCAAGATGGAAGTGTAATTATAGATAAACCAACACAAGAGACGAGGAAAAAGGCGA 1361
|| |||| ||||||||||||||| |||||||| || | |||| ||||||||||||||||
Sbjct 1365 CGTCTCAATATGGAAGTGTAATTACAGATAAACGAAAAAAAGAAACGAGGAAAAAGGCGA 1424
Query 1362 TGGATTTCAACAGGTCAAGTGCTGAGGAGAGTGATGTTATAGATTTGGAATTCCCGGTGT 1421
|||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1425 TGGATTTCAACAGGTCGAGTGCTGAGGAGAGTGATGTTACAGATTTGGAATTCTCGGTGT 1484
Query 1422 ATgagaaaccaaagaaggaagaagaagaggtcgatgaagaaactttgaaggagaggaaaa 1481
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1485 ATGAGAAACCAAAGAAGGAAGAAGAAGAGGTCGATGAAGAAACTTTGAAGGAGAGGGAAA 1544
Query 1482 gagaagagcagttagagaaagCTCGGTTAGCGATGGAAAGGAAGAGgaagctgcaagaga 1541
|||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||
Sbjct 1545 GAGAAGAGCAGTTAGAGAAAGCCCGGTTAGCAATGGAAAGGAAGAGGAAGCTTCAAGAGA 1604
Query 1542 aagctgctgctaaagctgctataagagctcaaaaggaagctgaaaagaaaCTCAAGGAGT 1601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1605 AAGCTGCTGCTAAAGCTGCTATAAGAGCTCAAAAGGAAGCTGAAAAGAAACTCAAGGAGT 1664
Query 1602 GTGAGAAAAAGGCGAAGAAGAAAGCTGC---AAATTCTTCTTCTCCTTCAGAATCAGACC 1658
||||||| ||||| |||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1665 GTGAGAAGAAGGCCAAGAAGAAAGCTGCTGCAAATTCTTCCTCTCCTTCAGAATCAGACC 1724
Query 1659 AATCACAAGAAGTTATCAATGAGCTGGAAAAGGGTAGGACTTTAGCTGTTTCAG-TGAAA 1717
| ||||||||||| | ||| || |||||||||| ||||||| |||| ||||||| | |||
Sbjct 1725 ACTCACAAGAAGTAACCAAAGACCTGGAAAAGGTTAGGACTCTAGCAGTTTCAGGT-AAA 1783
Query 1718 GAGAAACCCCAAAAGGAGAGATCATTGTTTCCAAAGCAGAGAAGTTTCAGGTACAAACAC 1777
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1784 GAAAAACACCAAAAGGAGAGATCATTGTTTCCAAAGCAGAGAAGTTTCAGGTACAAACAC 1843
Query 1778 CGCGGAAGAGGAACCGAAGCTCTCCCTAAGGCAATCCTAAACCGTAGAAGGGCTCAAAAA 1837
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||
Sbjct 1844 CGCGGAAGAGGAACCGAAGCTCTCCCTAAGGCCATCCTAAACCGTAGAAAGGCTCATAAA 1903
Query 1838 TATTGGGTTTGGGGACTTTCATCTGCTGCACTTGCTGTCGCACTCTTCCTTGTGGTTTTA 1897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1904 TATTGGGTTTGGGGACTTTCATCTGCTGCACTTGCTGTCGCACTCTTCCTTGTGGTTTTA 1963
Query 1898 CTTCTACGGTAAACTGGGAAAGGAAAGAGACATTAAAAAGGTTTTGACTCTGCCTAATTG 1957
||||||||||||| || |||||||||||||||||||| |||||| || | |||||||| |
Sbjct 1964 CTTCTACGGTAAATTGAGAAAGGAAAGAGACATTAAAGAGGTTT-GAGTTTGCCTAATGG 2022
Query 1958 -GAGATGGAGCAAGTGAAGGAAGAGCTGCTTCTGGACTTTCAAAGTTAGCTTTTAGTTTC 2016
||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2023 AGAGATAGAGTGAGTGAAGGAAGAGCTGCTTCTAGACTTTCAAAGTTAGCTTTTAGTTTC 2082
Query 2017 ATAACCTTAGATGTTAGTTAATATGTATCTGTCTCTTTGGAGAGTTGTCTTaaaaaaaaG 2076
||||||||||||||| |||||||||| |||||||||| |||||||||| | | |||||||
Sbjct 2083 ATAACCTTAGATGTTGGTTAATATGTTTCTGTCTCTTCGGAGAGTTGTGTGATAAAAAAG 2142
Query 2077 AGAAACATCCTAATTGTTAGTAGGAGCTTCTGAAAGTCCATAGAGACTCCATGTTGTCTT 2136
|||||||||||||| || | |||||||| |||||||||||||||||||||||||||
Sbjct 2143 AGAAACATCCTAAT----AG--G-AGCTTCTGTAAGTCCATAGAGACTCCATGTTGTCTT 2195
Query 2137 TATGTGAACATTGTGGATTGAATCCACTTTATAGT-TAGTCAAGTATCTTGACTA-ACTA 2194
||||||||||||||||||||||||||||||||| | ||||||||||||||||||| | ||
Sbjct 2196 TATGTGAACATTGTGGATTGAATCCACTTTATA-TCTAGTCAAGTATCTTGACTACA-TA 2253
Query 2195 TATACTTAGAAATTGCAAATAACATAAAGCTT 2226
||||||||||||||||||||||||||||||||
Sbjct 2254 TATACTTAGAAATTGCAAATAACATAAAGCTT 2285
> AT5G36690.1 | Symbols: | AT5G36690 and AT5G36780 represent identical
copies. The duplication within clone F27C7 is believed
an artifact with only one true copy existing. | chr5:14415185-14417288
REVERSE LENGTH=1731
Length=1731
Score = 1110 bits (601), Expect = 0.0
Identities = 1014/1208 (84%), Gaps = 49/1208 (4%)
Strand=Plus/Plus
Query 144 AGATTATACTCTGTGATGGCTTCGAGGTGGTTCCTCCG-CC--GATAAACGATTTGATAC 200
|||||||| |||||||||||||||||||||||||| || || |||||||||| | || |
Sbjct 11 AGATTATATTCTGTGATGGCTTCGAGGTGGTTCCTTCGCCCGAGATAAACGATCTAATTC 70
Query 201 TCTT-CGGAA-GAGGCCAATCTGT-ATCAAGTTGCGATGTATCAACGATCACTACCGAAG 257
| || | ||| | | ||||||| | | ||| | |||| | || || | | | | |||||
Sbjct 71 T-TTAC-GAATGCGACCAATCTTTGA-CAAATAGCGA-G-GTC-ACCA-C-CGA-CGAAG 121
Query 258 AAGACGGCACTGTTTTTTCC---GGTGATAGTTCGCCGGGAGGTGCAGCTGAAGAGGATT 314
|||| | |||| |||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 122 AAGAAGACACTATTTTTTCCGGTGGTGATAGTTCATCGGGACTTGCAGCTGAAGAGGATT 181
Query 315 GGCCTGAAGATAAATCTTTATCGTTT-TACTTTGTTAAGCAACCAGCTTACGATGATCCC 373
| ||| ||||||| || | || ||| ||| ||||||||||||| | ||||||| |||||
Sbjct 182 CGTCTGGAGATAAACCTCTCTC-TTTCTACATTGTTAAGCAACCTGTTTACGATAATCCC 240
Query 374 GAGATCCAAGCCAAGATCGATGAAGCTGGTCATGAGATTAAGCACTGTAATCAACTCCGT 433
||||| |||||||||||||||||||| ||| |||||| | |||||| |||||||
Sbjct 241 GAGATTAAAGCCAAGATCGATGAAGCTAATCAGGAGATTTTTCGTTGTAATGAACTCCGA 300
Query 434 ATTGGTGTCTCCAGTGCTC-AGAAATCCGAAAAGGCTGAGATTTCGTCTTTGTTTTCACA 492
|| ||||| || || | ||||||||||| ||||||| |||||||||||| | | ||
Sbjct 301 ATCAATGTCTTGAGCGC-CAAGAAATCCGAACTGGCTGAGGTTTCGTCTTTGTATACTCA 359
Query 493 TATGGTGAGTTTGACTCCTAAATCAGAAGGATATAGAGTGGTTTTTGAAGAGAAGAAGAG 552
|||| ||||||| |||| |||| |||||||||||| ||||| |||||||||||||||
Sbjct 360 AATGGAGAGTTTGGTTCCTCAATCTGAAGGATATAGAATGGTTATTGAAGAGAAGAAGAA 419
Query 553 GGAATTTGATACTCTACAAGAAGCTCTACGGAATCTCCGGTGCTCTACTAGTGATCAACT 612
||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 420 GGAGTTTGATACTCTACTTGAAGCTCTACGGAATCTCCGGTGCACTACTAGTGATCAACT 479
Query 613 TTGTTTTTCAAAGGAGGAACTCGATCATCTTATG-TATATAGCTCATTATCAGATTGAAC 671
||||||| ||||||||||||| |||||||||| | ||||||||||| ||||||||||||
Sbjct 480 TTGTTTTACAAAGGAGGAACTTGATCATCTTA-GTTATATAGCTCAGTATCAGATTGAAT 538
Query 672 ATGGTAGCATTGGTTTGGAGGAAGAAGATTGGGTGCTTAAAGAGACCGAGAAGCCTGATG 731
|||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||
Sbjct 539 ATGGTAGCATTGGTTTGGAGGAAGAAGATTGGATGCTTAAGGAGACTGAGAAGCCTGATG 598
Query 732 GGAT-AGTTCTAAGTGAGGATTCTCTTGCGGAGAAAGAAGCTTCCATAAACCGTGTTAAG 790
|||| | |||| | | | | |||||||||||||||||||| ||||| |||
Sbjct 599 GGATCA-TTCT-A---A-G-------T---GAGAAAGAAGCTTCCATAAATCGTGTCAAG 642
Query 791 TCTAAGGCCGTGGAATTGTATCAAGTAAAGAAGGAGCTCGATGCGATTACATGGAAGATA 850
|||| ||| |||||||| || |||||||||| ||||| ||||||||||| |||||||||
Sbjct 643 TCTATGGCTTTGGAATTGAATGAAGTAAAGAATGAGCTTGATGCGATTACTTGGAAGATA 702
Query 851 AAC--CTCTTGGCTGAAAAAATGGGGAAGAGTCGGAACAAGATCAAGATTTTGGATGTAG 908
||| | || | ||| ||| || ||||||||| ||||| || | | |||||||| | |
Sbjct 703 AACGAC-CTAAG-TGACAAATTGTGGAAGAGTCAAAACAACATTAGGGTTTTGGATTTGG 760
Query 909 AACTGGCACACATACTTGAGAAGAGGGACAGATCCTATGAAAGGATTAGGATGTTGAGGA 968
|| |||||||||||||||||||||||| |||| |||| |||||||| |||||||||||
Sbjct 761 AAAAGGCACACATACTTGAGAAGAGGGATAGATTTTATGCAAGGATTAAGATGTTGAGGA 820
Query 969 TACAACGAGACAAAGGGAAA-GATGCCTTTTTCGAGAGCCTTCCTGTTATGAGGAAAGCT 1027
|||||||||||||| ||||| | ||| |||||| |||||||| |||||||| | ||||||
Sbjct 821 TACAACGAGACAAA-GGAAATGCTGCATTTTTCCAGAGCCTTTCTGTTATGTGTAAAGCT 879
Query 1028 AAAGAATTGGCTGCTTCTGGAAATGTTCGAGATCTTGAAGTGTTTGCCAACTCTGAGGTT 1087
||||||||||||||||||||||||||| |||| |||||||||||||| | ||||||||||
Sbjct 880 AAAGAATTGGCTGCTTCTGGAAATGTTAGAGAGCTTGAAGTGTTTGCTAGCTCTGAGGTT 939
Query 1088 GAAAGATTCATGACTCATTGGAATGATGACAAGGCTTTTAGGGATGATTACGTAAAAAGA 1147
|| ||||||||||||| |||||||||||| |||||||||||||| |||||||||| ||||
Sbjct 940 GATAGATTCATGACTCTTTGGAATGATGATAAGGCTTTTAGGGAAGATTACGTAAGAAGA 999
Query 1148 ATCTCGCTTTCACTTTGTGAAAGACAGCTGAACCAAGATGGCCGGATTAAAGATCCTGAA 1207
||||||| |||||| ||||||||| | |||||| ||||||||||||| |||||| ||||
Sbjct 1000 ATCTCGCATTCACTATGTGAAAGAGAACTGAACGAAGATGGCCGGATAAAAGATGCTGAC 1059
Query 1208 GTTCAGGTTGTTGGGGAAAAGCAAGTACCGGTTAAGACTATGAAGGGAGGCGAGAAGGTT 1267
||||| || || |||||||| |||| |||||||||||||| ||| || |||||||||||
Sbjct 1060 CTTCAGATTTTTTGGGAAAAGAAAGTGCCGGTTAAGACTATAAAGCGAAGCGAGAAGGTT 1119
Query 1268 CACAAGACGAATAGAGAAGATCCCAGCTCCAACTTGTT-TCAAGATGGAAGTGTAATTAT 1326
|| |||| ||||||||||||| | ||||| |||| || | ||||||||| ||||||||
Sbjct 1120 CATAAGATGAATAGAGAAGATTCAAGCTCTAACTC-TTCTGAAGATGGAAATGTAATTAC 1178
Query 1327 AGATAAAC 1334
||||||||
Sbjct 1179 AGATAAAC 1186
Score = 361 bits (195), Expect = 2e-98
Identities = 281/320 (88%), Gaps = 15/320 (5%)
Strand=Plus/Plus
Query 1593 TCAAGGAGTGTGAGAAAAAGGCGAAGAAGAAA---GCTGCAAATTCTTCTTCTCCTTCAG 1649
|||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 1424 TCAATGAGTGTGAGAAAAAGGCGAAGAAGAAAGCTGCTGCAAATTCTACTTCTCCTTCAG 1483
Query 1650 AATCAGACCAATCACAAGAAGTTATCAATGAGCTGGAAAAGGGTAGGACTTTAGCTGTTT 1709
||||||||||| | | |||||||| || |||||| |||||| ||||| ||||
Sbjct 1484 AATCAGACCAA------GTA---ATCAATGA--TG-AAAAGGTTAGGACATTAGCAGTTT 1531
Query 1710 CAGTGAAAGAGAAACCCCAAAAGGAGAGATCATTGTTTCCAAAGCAGAGAAGTTTCAGGT 1769
||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1532 CAGGGAAAGAGAAACACCAAAAGGAGAGATTGTTGTTTCCAAAGCAGAGAAGTTTTAGGT 1591
Query 1770 ACAAACACCGCGGAAGAGGAACCGAAGCTCTCCCTAAGGCAATCCTAAACCGTAGAAGGG 1829
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1592 ACAAACACCGCGGAAGCGGAACCGAAGCTCTCCCTAAGGCCATCCTAAACCGTAGAAAGG 1651
Query 1830 CTCAAAAATATTGGGTTTGGGGACTTTCATCTGCTGCACTTGCTGTCGCACTCTTCCTTG 1889
||| ||||||||||||||||||||| |||||||||||||| ||| | ||| ||||||
Sbjct 1652 CTCGTCGATATTGGGTTTGGGGACTTTCTTCTGCTGCACTTGCGGTCTCGCTCGTCCTTG 1711
Query 1890 TGGTTTTACTTCTACGGTAA 1909
|||||||||||||| |||||
Sbjct 1712 TGGTTTTACTTCTAAGGTAA 1731
> AT5G36780.1 | Symbols: | AT5G36780 and AT5G36690 represent identical
copies. The duplication within clone F27C7 is believed
an artifact with only one true copy existing. | chr5:14474485-14476588
REVERSE LENGTH=1731
Length=1731
Score = 1110 bits (601), Expect = 0.0
Identities = 1014/1208 (84%), Gaps = 49/1208 (4%)
Strand=Plus/Plus
Query 144 AGATTATACTCTGTGATGGCTTCGAGGTGGTTCCTCCG-CC--GATAAACGATTTGATAC 200
|||||||| |||||||||||||||||||||||||| || || |||||||||| | || |
Sbjct 11 AGATTATATTCTGTGATGGCTTCGAGGTGGTTCCTTCGCCCGAGATAAACGATCTAATTC 70
Query 201 TCTT-CGGAA-GAGGCCAATCTGT-ATCAAGTTGCGATGTATCAACGATCACTACCGAAG 257
| || | ||| | | ||||||| | | ||| | |||| | || || | | | | |||||
Sbjct 71 T-TTAC-GAATGCGACCAATCTTTGA-CAAATAGCGA-G-GTC-ACCA-C-CGA-CGAAG 121
Query 258 AAGACGGCACTGTTTTTTCC---GGTGATAGTTCGCCGGGAGGTGCAGCTGAAGAGGATT 314
|||| | |||| |||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 122 AAGAAGACACTATTTTTTCCGGTGGTGATAGTTCATCGGGACTTGCAGCTGAAGAGGATT 181
Query 315 GGCCTGAAGATAAATCTTTATCGTTT-TACTTTGTTAAGCAACCAGCTTACGATGATCCC 373
| ||| ||||||| || | || ||| ||| ||||||||||||| | ||||||| |||||
Sbjct 182 CGTCTGGAGATAAACCTCTCTC-TTTCTACATTGTTAAGCAACCTGTTTACGATAATCCC 240
Query 374 GAGATCCAAGCCAAGATCGATGAAGCTGGTCATGAGATTAAGCACTGTAATCAACTCCGT 433
||||| |||||||||||||||||||| ||| |||||| | |||||| |||||||
Sbjct 241 GAGATTAAAGCCAAGATCGATGAAGCTAATCAGGAGATTTTTCGTTGTAATGAACTCCGA 300
Query 434 ATTGGTGTCTCCAGTGCTC-AGAAATCCGAAAAGGCTGAGATTTCGTCTTTGTTTTCACA 492
|| ||||| || || | ||||||||||| ||||||| |||||||||||| | | ||
Sbjct 301 ATCAATGTCTTGAGCGC-CAAGAAATCCGAACTGGCTGAGGTTTCGTCTTTGTATACTCA 359
Query 493 TATGGTGAGTTTGACTCCTAAATCAGAAGGATATAGAGTGGTTTTTGAAGAGAAGAAGAG 552
|||| ||||||| |||| |||| |||||||||||| ||||| |||||||||||||||
Sbjct 360 AATGGAGAGTTTGGTTCCTCAATCTGAAGGATATAGAATGGTTATTGAAGAGAAGAAGAA 419
Query 553 GGAATTTGATACTCTACAAGAAGCTCTACGGAATCTCCGGTGCTCTACTAGTGATCAACT 612
||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 420 GGAGTTTGATACTCTACTTGAAGCTCTACGGAATCTCCGGTGCACTACTAGTGATCAACT 479
Query 613 TTGTTTTTCAAAGGAGGAACTCGATCATCTTATG-TATATAGCTCATTATCAGATTGAAC 671
||||||| ||||||||||||| |||||||||| | ||||||||||| ||||||||||||
Sbjct 480 TTGTTTTACAAAGGAGGAACTTGATCATCTTA-GTTATATAGCTCAGTATCAGATTGAAT 538
Query 672 ATGGTAGCATTGGTTTGGAGGAAGAAGATTGGGTGCTTAAAGAGACCGAGAAGCCTGATG 731
|||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||
Sbjct 539 ATGGTAGCATTGGTTTGGAGGAAGAAGATTGGATGCTTAAGGAGACTGAGAAGCCTGATG 598
Query 732 GGAT-AGTTCTAAGTGAGGATTCTCTTGCGGAGAAAGAAGCTTCCATAAACCGTGTTAAG 790
|||| | |||| | | | | |||||||||||||||||||| ||||| |||
Sbjct 599 GGATCA-TTCT-A---A-G-------T---GAGAAAGAAGCTTCCATAAATCGTGTCAAG 642
Query 791 TCTAAGGCCGTGGAATTGTATCAAGTAAAGAAGGAGCTCGATGCGATTACATGGAAGATA 850
|||| ||| |||||||| || |||||||||| ||||| ||||||||||| |||||||||
Sbjct 643 TCTATGGCTTTGGAATTGAATGAAGTAAAGAATGAGCTTGATGCGATTACTTGGAAGATA 702
Query 851 AAC--CTCTTGGCTGAAAAAATGGGGAAGAGTCGGAACAAGATCAAGATTTTGGATGTAG 908
||| | || | ||| ||| || ||||||||| ||||| || | | |||||||| | |
Sbjct 703 AACGAC-CTAAG-TGACAAATTGTGGAAGAGTCAAAACAACATTAGGGTTTTGGATTTGG 760
Query 909 AACTGGCACACATACTTGAGAAGAGGGACAGATCCTATGAAAGGATTAGGATGTTGAGGA 968
|| |||||||||||||||||||||||| |||| |||| |||||||| |||||||||||
Sbjct 761 AAAAGGCACACATACTTGAGAAGAGGGATAGATTTTATGCAAGGATTAAGATGTTGAGGA 820
Query 969 TACAACGAGACAAAGGGAAA-GATGCCTTTTTCGAGAGCCTTCCTGTTATGAGGAAAGCT 1027
|||||||||||||| ||||| | ||| |||||| |||||||| |||||||| | ||||||
Sbjct 821 TACAACGAGACAAA-GGAAATGCTGCATTTTTCCAGAGCCTTTCTGTTATGTGTAAAGCT 879
Query 1028 AAAGAATTGGCTGCTTCTGGAAATGTTCGAGATCTTGAAGTGTTTGCCAACTCTGAGGTT 1087
||||||||||||||||||||||||||| |||| |||||||||||||| | ||||||||||
Sbjct 880 AAAGAATTGGCTGCTTCTGGAAATGTTAGAGAGCTTGAAGTGTTTGCTAGCTCTGAGGTT 939
Query 1088 GAAAGATTCATGACTCATTGGAATGATGACAAGGCTTTTAGGGATGATTACGTAAAAAGA 1147
|| ||||||||||||| |||||||||||| |||||||||||||| |||||||||| ||||
Sbjct 940 GATAGATTCATGACTCTTTGGAATGATGATAAGGCTTTTAGGGAAGATTACGTAAGAAGA 999
Query 1148 ATCTCGCTTTCACTTTGTGAAAGACAGCTGAACCAAGATGGCCGGATTAAAGATCCTGAA 1207
||||||| |||||| ||||||||| | |||||| ||||||||||||| |||||| ||||
Sbjct 1000 ATCTCGCATTCACTATGTGAAAGAGAACTGAACGAAGATGGCCGGATAAAAGATGCTGAC 1059
Query 1208 GTTCAGGTTGTTGGGGAAAAGCAAGTACCGGTTAAGACTATGAAGGGAGGCGAGAAGGTT 1267
||||| || || |||||||| |||| |||||||||||||| ||| || |||||||||||
Sbjct 1060 CTTCAGATTTTTTGGGAAAAGAAAGTGCCGGTTAAGACTATAAAGCGAAGCGAGAAGGTT 1119
Query 1268 CACAAGACGAATAGAGAAGATCCCAGCTCCAACTTGTT-TCAAGATGGAAGTGTAATTAT 1326
|| |||| ||||||||||||| | ||||| |||| || | ||||||||| ||||||||
Sbjct 1120 CATAAGATGAATAGAGAAGATTCAAGCTCTAACTC-TTCTGAAGATGGAAATGTAATTAC 1178
Query 1327 AGATAAAC 1334
||||||||
Sbjct 1179 AGATAAAC 1186
Score = 361 bits (195), Expect = 2e-98
Identities = 281/320 (88%), Gaps = 15/320 (5%)
Strand=Plus/Plus
Query 1593 TCAAGGAGTGTGAGAAAAAGGCGAAGAAGAAA---GCTGCAAATTCTTCTTCTCCTTCAG 1649
|||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 1424 TCAATGAGTGTGAGAAAAAGGCGAAGAAGAAAGCTGCTGCAAATTCTACTTCTCCTTCAG 1483
Query 1650 AATCAGACCAATCACAAGAAGTTATCAATGAGCTGGAAAAGGGTAGGACTTTAGCTGTTT 1709
||||||||||| | | |||||||| || |||||| |||||| ||||| ||||
Sbjct 1484 AATCAGACCAA------GTA---ATCAATGA--TG-AAAAGGTTAGGACATTAGCAGTTT 1531
Query 1710 CAGTGAAAGAGAAACCCCAAAAGGAGAGATCATTGTTTCCAAAGCAGAGAAGTTTCAGGT 1769
||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1532 CAGGGAAAGAGAAACACCAAAAGGAGAGATTGTTGTTTCCAAAGCAGAGAAGTTTTAGGT 1591
Query 1770 ACAAACACCGCGGAAGAGGAACCGAAGCTCTCCCTAAGGCAATCCTAAACCGTAGAAGGG 1829
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1592 ACAAACACCGCGGAAGCGGAACCGAAGCTCTCCCTAAGGCCATCCTAAACCGTAGAAAGG 1651
Query 1830 CTCAAAAATATTGGGTTTGGGGACTTTCATCTGCTGCACTTGCTGTCGCACTCTTCCTTG 1889
||| ||||||||||||||||||||| |||||||||||||| ||| | ||| ||||||
Sbjct 1652 CTCGTCGATATTGGGTTTGGGGACTTTCTTCTGCTGCACTTGCGGTCTCGCTCGTCCTTG 1711
Query 1890 TGGTTTTACTTCTACGGTAA 1909
|||||||||||||| |||||
Sbjct 1712 TGGTTTTACTTCTAAGGTAA 1731
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110441199000
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5