BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478965
Length=1928
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15350.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 2549 0.0
AT1G53100.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 671 0.0
> AT3G15350.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein | chr3:5166206-5169151
FORWARD LENGTH=1964
Length=1964
Score = 2549 bits (1380), Expect = 0.0
Identities = 1662/1794 (93%), Gaps = 36/1794 (2%)
Strand=Plus/Plus
Query 150 ACAAAAGCTTCATTGCCTCGAGATTATACAGCATCAAGGCAACA-ACAACAAAAAAGCCA 208
|||||||||||||||||||||||||| ||||||||||| ||||| ||| ||| | |||
Sbjct 186 ACAAAAGCTTCATTGCCTCGAGATTAAACAGCATCAAGACAACATCCAA-AAATTACCCA 244
Query 209 GGTTTTTGTGTTTGGAACTC-AAGATTGTTGCGGATTCCTGAAAGATTCAGGCTTTTAGC 267
|||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 245 GGTTTTTGTGTTTGAAACTCGAAGATTGTTGCGGATTCCTGAAAGATTAAGGCTTTTAGC 304
Query 268 TCCAAGTTTCCAAGAGGGCTGTGAATCAGCTCACATC-CGGGGATTTG-AT-TCGGCAAG 324
|||||||||||||||| ||||||||||||||| || | | | | || || | |||||
Sbjct 305 TCCAAGTTTCCAAGAGTGCTGTGAATCAGCTCCCA-CTC-TGTCTCTGCATAT-TGCAAG 361
Query 325 AAACCGGTTTTCTTTCAGAAGTTTGTTTCTTCTTGTCTCATGATCACTAGCTTTCACCAA 384
| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 362 ACACCGGTTTTGTTTCAGAAGTTTGTTTCTTCTTGTCTCATGATCACTAGTTTTCAGCAA 421
Query 385 TGGGGTATGTAAACGTGGAGAAGAGATGGGTTTTTCCTCTTGTCATCACATCTCTTGTCT 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 422 TGGGGTATGTAAACGTGGAGAAGAGATGGGTTTTTCCTCTTGTCATCACATCTCTCGTCT 481
Query 445 GCGTTTTTCTCCTTGCAACGTCTTTCAATATGGGCCTAGTCTCTTCGCTCCGAACAATCA 504
||||||| || |||||||| |||||||| ||||| ||||||||||| |||||||||||||
Sbjct 482 GCGTTTTCCTTCTTGCAACTTCTTTCAACATGGGACTAGTCTCTTCCCTCCGAACAATCA 541
Query 505 ACGGGATTTTCTCCATCATCCCTTCCCGTCTTGTCAAGAACCAAACGAGACTTGATTTTG 564
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 542 ACGGGATTTTCTCCATCATACCTTCCCGTCTCGTCAAGAACCAAACGAGACTTGATTTTG 601
Query 565 CAGAGTCTAAAGTAGCTAGACAAACCCGTGTTTCGCCTCATGAAGACAAGCTTCCCCGTT 624
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 602 CAGAGTCTAAAGTTGCTAGACAAACCCGTGTTTTGCCTCATGAAGACAAGCTTCCCCGTT 661
Query 625 TTGCATACCTTGTTTCCGGGTCTAAAGGGGATGTAGAAAAGCTTTGGAGAACACTTAGAG 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 TTGCATACCTTGTTTCCGGGTCTAAAGGGGATGTAGAAAAGCTTTGGAGAACACTTAGAG 721
Query 685 CAGTGTACCATCCCAGGAACCAGTATGTTGTTCACTTGGATCTTGAATCACCGGTGGATG 744
||||||||||||| || ||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 722 CAGTGTACCATCCAAGAAACCAGTATGTTGTTCACTTGGATCTTGAATCACCTGTGAATG 781
Query 745 AGAGATTAGAGCTAGCTTCTCGGATTAATAATGATCCTATGTATTCTGAAACCGGGAATG 804
||||||||||||| || |||||||||||||| ||||||||||| ||| ||||||||||||
Sbjct 782 AGAGATTAGAGCTGGCCTCTCGGATTAATAACGATCCTATGTACTCTAAAACCGGGAATG 841
Query 805 TATATATGATAACCAAGGCTAACCTTGTGACATATAAAGGACCAACGATGGTGGCAAATA 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 TATATATGATAACCAAGGCTAACCTTGTGACATATAAAGGACCAACGATGGTGGCAAATA 901
Query 865 CTCTTCACGCTTGTGC-GATTCTTCTTAAGAGAAGCGCGAACTGGGATTGGTTTATTAAC 923
|||||||||||||||| | ||||||| ||||||| ||||||||||||||||||||||||
Sbjct 902 CTCTTCACGCTTGTGCTG-TTCTTCTCAAGAGAAATGCGAACTGGGATTGGTTTATTAAC 960
Query 924 CTCAGTGCTTCAGATTATCCTCTGGTGACCCAAGATGATCTGCTTCAAACGTTTTCGACA 983
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 961 CTTAGTGCTTCAGATTATCCTCTGGTGACCCAAGATGATCTGCTTCATACGTTTTCAACA 1020
Query 984 TTGGATCGGAACCTCAACTTTATCGAACACACAAGTCAACTGGGTTGGAAAGAGGAGAAG 1043
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1021 TTGGACCGGAACCTCAACTTTATCGAACACACAAGTCAACTGGGATGGAAAGAGGAGAAG 1080
Query 1044 CGAGCACAGCCATTAATGATTGATCCTGGACTCTACTTGTTGAACAAATCAGATATTTAC 1103
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1081 CGAGCACAGCCATTAATGATTGATCCTGGACTCTACTTGTTGAACAAATCTGATATTTAC 1140
Query 1104 TGGGTCACACCTCGCCGAAGTTTGCCAACTGCCTTCAAGTTATTCACTGGATCAGCTTGG 1163
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1141 TGGGTCACACCTCGCCGAAGTTTGCCAACTGCCTTTAAGTTATTCACTGGATCAGCTTGG 1200
Query 1164 ATGGCTCTATCACGCCCATTTGTAGAGTATTGCATATGGGGATGGGACAATTTACCACGA 1223
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 ATGGCTCTATCACGCCCGTTTGTAGAGTATTGCATATGGGGATGGGACAATTTACCACGA 1260
Query 1224 ACCCTCCTAATGTATTACACCAACTTCGTTTCATCACCCGAAGGTTACTTCCAGACAGTG 1283
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1261 ACTCTCCTAATGTATTACACCAACTTCGTTTCATCGCCCGAAGGTTACTTCCAGACCGTG 1320
Query 1284 ATTTGCAATGTACCCGAGTTTGCAAAAACTGCAGTAAACCATGACCTCCACTACATTTCC 1343
|||||||| || || |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1321 ATTTGCAACGTGCCTGAGTTTGCAAAAACTGCAGTAAACCATGACCTACACTACATTTCC 1380
Query 1344 TGGGACAATCCGCCGCAGCAGCACCCACACGTGTTGTCACTCAACGACACAATGCAGATG 1403
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1381 TGGGACAATCCGCCGCAGCAGCACCCACACGTGTTGTCACTCAACGACACAATGCCGATG 1440
Query 1404 ATATCGAGTGGTGCTGCGTTTGCTAGGAAATTCAGAAGAGACGACAGA-GTACTTGATCT 1462
|||| ||| |||||||||||||||||||||||||||||||| || || |||||| ||
Sbjct 1441 ATATGGAGCGGTGCTGCGTTTGCTAGGAAATTCAGAAGAGATGAT-GAAGTACTTAATAA 1499
Query 1463 TATCGATAAGGAATTACTTAGACGGAGGAATGGTAAAGATAGTTTTACTCCTGGTGGATG 1522
||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1500 GATCGATAAGGAATTACTTAAACGGAGGAATGATAAAGATAGTTTTACTCCTGGTGGATG 1559
Query 1523 GTGCAGTGGGAAACCAAAATGCTCCAAGGTCGGTGACATGGCTAAGATTGATCCTAGCGT 1582
|||||||||||||||||||||||||| ||||||| | |||||||||||| ||||||| |
Sbjct 1560 GTGCAGTGGGAAACCAAAATGCTCCAGGGTCGGTAATGTGGCTAAGATTGTTCCTAGCTT 1619
Query 1583 TGGAGCTCAGAGGCTCCAGGGACTTGTGAACAGGTTAGTCAACGAAGCTATTACAGGAGT 1642
||||||||||||||| || |||||||||| |||||||||||||||||||| |||||||||
Sbjct 1620 TGGAGCTCAGAGGCTTCAAGGACTTGTGACCAGGTTAGTCAACGAAGCTAATACAGGAGT 1679
Query 1643 TAGTCAGTGTAAATAGATCGAATTCGAAGaaaaaaaGGAATCATTTTGGG-GCTT-TG-A 1699
||||||||||||||||| |||||||||||||||||| || |||| | | | | || |
Sbjct 1680 TAGTCAGTGTAAATAGAAAGAATTCGAAGAAAAAAAG-AACCATTATCGAAG-TAATGGA 1737
Query 1700 -ATCGAAT-TCATGATGATATATATAAATATACAACATATAGAGAATCTTGCAGTTGCAG 1757
| ||| | ||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1738 GAGCGACTGTCATGAT-ATATATATT--TATACAACATATAGAGAATCTTGCAGTTGCAG 1794
Query 1758 GCTTTAGAAAA-ACTATTAGCCATTGTTTTCATTGAGTAGAGATGCCTTGTA-TGCCACG 1815
|||||||| || |||||||| |||||||| |||||||||||||||||||||| |||||||
Sbjct 1795 GCTTTAGATAAGACTATTAGACATTGTTTGCATTGAGTAGAGATGCCTTGTAATGCCACG 1854
Query 1816 ACCTACTGGGATTAAATTTTTCTT-GTTTGAAGTCATCTCCTTCAAATTTCAAATCAAAT 1874
||||||||||||| | ||||| || |||||||||||||||||||||| | | ||| |
Sbjct 1855 ACCTACTGGGATTCA-TTTTTGTTTGTTTGAAGTCATCTCCTTCAAAAT-C----CAA-T 1907
Query 1875 AAAAATTATAACCCtttttttttttGAGATGTTTTCAATTATAACAGAATATAC 1928
|||| |||||||| ||||||| || |||||||||||| ||||||||||||||||
Sbjct 1908 AAAA-TTATAACC-TTTTTTTATT-GAGATGTTTTCAGTTATAACAGAATATAC 1958
Score = 148 bits (80), Expect = 1e-34
Identities = 142/168 (85%), Gaps = 20/168 (12%)
Strand=Plus/Plus
Query 1 ATAGATTCCAGAAATAAAGGAACAGAGAGACA-A-------TAAAAA-----GTAACGAA 47
|||||||||||||||||||||||||||||||| | |||||| ||||||||
Sbjct 1 ATAGATTCCAGAAATAAAGGAACAGAGAGACACACACAAGATAAAAAAAAAAGTAACGAA 60
Query 48 ATTTAGAGGTGAAAGAA-CCAAAGATTTGGAATTTTTCTTTGTTGTAGTATAATTTTTCC 106
||| |||| |||| ||| ||||||||||||||||||||||||| |||| | ||| ||
Sbjct 61 ATTGAGAGCTGAATGAAACCAAAGATTTGGAATTTTTCTTTGTA-TAGT-T--TTT--CC 114
Query 107 ACGAATCGGAGTATCTCACACGAAGTGTCCCGTGTTCTTGAGCACAAA 154
||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 115 ACGAATCGGAGTATCACACACGGAGTGTCCCGTGTTCTTGAGCACAAA 162
> AT1G53100.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein | chr1:19786956-19788969
REVERSE LENGTH=1415
Length=1415
Score = 671 bits (363), Expect = 0.0
Identities = 765/955 (80%), Gaps = 43/955 (5%)
Strand=Plus/Plus
Query 609 GACAAGCTTCCC-CGTTTTGCATACCTTGTTTCCGGGTCTAAAGGGGATGTAGAAAAG-C 666
||||||| |||| ||||| || ||||||||||| || |||||||| ||| | | |||| |
Sbjct 341 GACAAGC-TCCCACGTTTCGCTTACCTTGTTTCAGGATCTAAAGGAGATCTTG-AAAGCC 398
Query 667 TTTGGAGAACACTTAGAGCAGTGTACCATCCCAGGAACCAGTATGTTGTTCACTTGGATC 726
|||||||||| ||||||||| |||||||||| || ||||| || |||||||||||||||
Sbjct 399 TTTGGAGAACTCTTAGAGCATTGTACCATCCAAGAAACCAATACATTGTTCACTTGGATC 458
Query 727 TTGAATCACCGGTGGATGAGAGATTAGAGCTAGCTTCTCGGATTA-ATAATGATCCTATG 785
||||||||||||| |||||||||| |||| |||||||||| ||| | || |||||||||
Sbjct 459 TTGAATCACCGGTTGATGAGAGATCAGAGTTAGCTTCTCGCATTTCA-AACGATCCTATG 517
Query 786 TATTCTGAAACCGGGAA-TGTATATATGATAACCAAGGCTAACCTTGTGACATATAAAGG 844
||||| ||| | |||| ||||||||||||||| || ||||| |||||||| |||| ||
Sbjct 518 TATTCA-AAAGCAGGAAATGTATATATGATAACTAAAGCTAATCTTGTGACTTATACCGG 576
Query 845 ACCAACGATGGTGGCAAATACTCTTCACGCTTGTGCGATTCTTCTTAAGAGAAGCGCGAA 904
|||||| |||||||| ||||| |||||||| ||||||||||||||||| |||| | || |
Sbjct 577 ACCAACAATGGTGGCGAATACGCTTCACGCATGTGCGATTCTTCTTAAAAGAACCCCGGA 636
Query 905 CTGGGATTGGTTTATTAACCTCAGTGCTTCAGATTATCCTCTGGTGACCCAAGATGATCT 964
|||||||||||||| || || |||||||| |||||||| || ||||| |||||||||||
Sbjct 637 TTGGGATTGGTTTATCAATCTTAGTGCTTCGGATTATCCCCTCGTGACTCAAGATGATCT 696
Query 965 GCTTCAAACGTTTTCGACATTGGATCGGAACCTCAACTTTATCGAACACACAAGT-CAAC 1023
| |||| || |||||||||||||| |||||||| ||||||||||| ||||||||| | |
Sbjct 697 GATTCATACATTTTCGACATTGGACCGGAACCTTAACTTTATCGAGCACACAAGTTC--C 754
Query 1024 TG-GGTTGGAAAGAGGAGAAGCGAGCACA-GCCATTAATGATTGATCCTGGACTCTACT- 1080
| || |||||| | ||||||| ||| | ||||||||| ||||||||||||||||| |
Sbjct 755 TTAGGCTGGAAATACAAGAAGCGGGCA-ATGCCATTAATAATTGATCCTGGACTCTA-TA 812
Query 1081 TGTTGAACAAATCAGATATTT-ACTGGGTCACACCTCGCCGAAGTTTGCCAACTGCCTTC 1139
|||| ||||||||| | ||| | ||| | | |||| |||||||| || |||| |||
Sbjct 813 TGTTAAACAAATCAAACGTTTTATTGGTT-AGACCTAATCGAAGTTTACCTTCTGCTTTC 871
Query 1140 AAGTTATTCACTGGATCAGCTTGGATGGCTCTATCACGCCCATTTGTAGAGTAT-TGCAT 1198
|||||||| || | ||||||||||||||||| | | |||| || |||||| | |||
Sbjct 872 AAGTTATTTAC-----C-GCTTGGATGGCTCTATCGCACGCATTCGTGGAGTATAT-CAT 924
Query 1199 ATGGGGATGGGACAATTTACCACGAACCCTCCTAATGTATTACACCAACTTCGTTTCATC 1258
|| || ||||||||||||||| |||| | || ||||| |||||||| |||||||| ||
Sbjct 925 ATACGGTTGGGACAATTTACCAAGAACTTTACTCATGTACTACACCAATTTCGTTTCTTC 984
Query 1259 ACCCGAAGGTTACTTCCAGACAGTGATTTGCAATGTACCCGAGTT-TGCAAAAACTGCAG 1317
|| |||||||||||||| ||||| || || || || || ||||| | ||||| | || |
Sbjct 985 TCCTGAAGGTTACTTCCATACAGTCATATGTAACGTGCCTGAGTTCTCCAAAACC-GCGG 1043
Query 1318 TAAACCATGACCTCCACTACATTTCCTGGGACAATCCGCCGCAG-CAGCACCCACACGTG 1376
| |||||||| || |||||||| | |||||||| || ||| || ||||| || | ||
Sbjct 1044 TGAACCATGATCTTCACTACATCGCATGGGACAAGCCACCG-AGGCAGCATCCTCGTATG 1102
Query 1377 TTGTCACTCAACGACACAATGC-A--GATGATATCGAGTGG-TGCTGCGTTTGCTAGGAA 1432
||||| |||| || ||| || | |||||| ||||| || | |||| |||| | ||||
Sbjct 1103 TTGTC--TCAAAGAGACA-TGGGAAAGATGATTTCGAGCGGAT-CTGCATTTGGTCGGAA 1158
Query 1433 ATTCAGAAGAGACGACAGAGTACTTG-ATCTTATCGATAAGGAATTACTTAGACGGAGGA 1491
||||||||| | || | || ||| || || ||||||||| | |||| ||||| |
Sbjct 1159 GTTCAGAAGAAATGATACTGTT-TTGGATAAGATTGATAAGGAACTGCTTATACGGATAA 1217
Query 1492 ATGGTAAAGATAGTTTTACTCCTGGTGGATGGTGCAGTGGGAAACCAAAATGCTC 1546
| | || || |||||||||| || || |||||| ||||||||||| | |||||
Sbjct 1218 ACG--AA-GACGGTTTTACTCCAGGCGGTTGGTGCGGTGGGAAACCAGAGTGCTC 1269
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95481436590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5