BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478970
Length=591
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15351.1 | Symbols: | unknown protein; Has 50 Blast hits to... 887 0.0
> AT3G15351.1 | Symbols: | unknown protein; Has 50 Blast hits
to 50 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa
- 7; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr3:5176059-5177648 FORWARD
LENGTH=688
Length=688
Score = 887 bits (480), Expect = 0.0
Identities = 557/594 (94%), Gaps = 6/594 (1%)
Strand=Plus/Plus
Query 1 ATTGCGTCACCGAGATTCTCACCGGTCCTCTGCTTTTTGAATCTTTGTCTTTAAATCCAT 60
||||||||||||||||||||||||| ||||||||| || |||||| |||| |||||||||
Sbjct 1 ATTGCGTCACCGAGATTCTCACCGGACCTCTGCTTATTAAATCTTCGTCTGTAAATCCAT 60
Query 61 TCAAAGGTTATTAGAGATGGAGTTGGATCCAAAGAAGTTTGCGGCACTATTGGACAAAAT 120
| ||| | | |||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 61 TTAAA-G--ACTAGAGATGGATTTGGATCCAAAGAAGTTTGCTGCACTATTGGACAAAAT 117
Query 121 TGAAGCTGAAGCTGATGAGTTTCTATTAGCTCGAAATCAGATGGTGGAGAATGACAAGGA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 TGAAGCTGAAGCTGATGAGTTTCTATTAGCTCGAAATCAGATGGTGGAGAATGACAAGGA 177
Query 181 GAGGAATGCAAACCGAGAGGCTCTTACAGCACTTAGGAAGAGAGCTCGGACAACAAAGAC 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 178 GAGGAATGCAAACCGAGAGGCTCTTACAGCACTAAGGAAGAGAGCTCGGACAACAAAGAC 237
Query 241 TAGTGTTCTGTCTCCATTCGATTCTATGATGAAAGATATACATGTGAGCTCAACGAAACC 300
||||||| |||||||||| |||||||||||||| ||||| |||| |||||||||||||||
Sbjct 238 TAGTGTTATGTCTCCATTTGATTCTATGATGAAGGATATCCATGGGAGCTCAACGAAACC 297
Query 301 TTTGGTCCAAGAAGTTTGCTCCACATGTGGATCCCATGATTCTAGTGAACCCAATTGGAT 360
||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 298 TTTGGTCCAAGAAGTTTGCTCCACATGTGGATCCCATGACTCTAGTGAACCCACCTGGAT 357
Query 361 GATGCTCCCAGGAGCTGATCTTTTTGCTGCAATTCCGTTTCATGCTGTGCATACAATGCT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GATGCTCCCAGGAGCTGATCTTTTTGCTGCAATTCCGTTTCATGCTGTGCATACAATGCT 417
Query 421 AGAGAAAGATGAAGAGAAAATGGAGTTTGAATCGAAGAAATTGCAGAGCCTAGTGAAGGA 480
||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||
Sbjct 418 AGAGAAAGATGAAGAGAAAATGGAGTTTGAATCGAAGAAGTTACAGAGCTTAGTGAAGGA 477
Query 481 GAAAGCTCTGTTTATATCAGAACTAGGGGCTCTTGCTGATAGTACTTCTCCAGGCGTTAT 540
||||||||||||||||| ||||||||||||||||||||| ||| |||||| ||||||||
Sbjct 478 AAAAGCTCTGTTTATATCGGAACTAGGGGCTCTTGCTGATGGTATTTCTCCTGGCGTTAT 537
Query 541 CAGATCGTTGGTGGCTTTAAAGGATAA-C-TAAACTAAA-TAGAAGAAGTAGAA 591
||||||||||||||||||| |||| || | | || | || ||||||||||||||
Sbjct 538 CAGATCGTTGGTGGCTTTAGAGGACAAACCTTAAGTTAAGTAGAAGAAGTAGAA 591
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28432527202
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5