BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg478970 Length=591 Score E Sequences producing significant alignments: (Bits) Value AT3G15351.1 | Symbols: | unknown protein; Has 50 Blast hits to... 887 0.0 > AT3G15351.1 | Symbols: | unknown protein; Has 50 Blast hits to 50 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:5176059-5177648 FORWARD LENGTH=688 Length=688 Score = 887 bits (480), Expect = 0.0 Identities = 557/594 (94%), Gaps = 6/594 (1%) Strand=Plus/Plus Query 1 ATTGCGTCACCGAGATTCTCACCGGTCCTCTGCTTTTTGAATCTTTGTCTTTAAATCCAT 60 ||||||||||||||||||||||||| ||||||||| || |||||| |||| ||||||||| Sbjct 1 ATTGCGTCACCGAGATTCTCACCGGACCTCTGCTTATTAAATCTTCGTCTGTAAATCCAT 60 Query 61 TCAAAGGTTATTAGAGATGGAGTTGGATCCAAAGAAGTTTGCGGCACTATTGGACAAAAT 120 | ||| | | |||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 61 TTAAA-G--ACTAGAGATGGATTTGGATCCAAAGAAGTTTGCTGCACTATTGGACAAAAT 117 Query 121 TGAAGCTGAAGCTGATGAGTTTCTATTAGCTCGAAATCAGATGGTGGAGAATGACAAGGA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 118 TGAAGCTGAAGCTGATGAGTTTCTATTAGCTCGAAATCAGATGGTGGAGAATGACAAGGA 177 Query 181 GAGGAATGCAAACCGAGAGGCTCTTACAGCACTTAGGAAGAGAGCTCGGACAACAAAGAC 240 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 178 GAGGAATGCAAACCGAGAGGCTCTTACAGCACTAAGGAAGAGAGCTCGGACAACAAAGAC 237 Query 241 TAGTGTTCTGTCTCCATTCGATTCTATGATGAAAGATATACATGTGAGCTCAACGAAACC 300 ||||||| |||||||||| |||||||||||||| ||||| |||| ||||||||||||||| Sbjct 238 TAGTGTTATGTCTCCATTTGATTCTATGATGAAGGATATCCATGGGAGCTCAACGAAACC 297 Query 301 TTTGGTCCAAGAAGTTTGCTCCACATGTGGATCCCATGATTCTAGTGAACCCAATTGGAT 360 ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct 298 TTTGGTCCAAGAAGTTTGCTCCACATGTGGATCCCATGACTCTAGTGAACCCACCTGGAT 357 Query 361 GATGCTCCCAGGAGCTGATCTTTTTGCTGCAATTCCGTTTCATGCTGTGCATACAATGCT 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 358 GATGCTCCCAGGAGCTGATCTTTTTGCTGCAATTCCGTTTCATGCTGTGCATACAATGCT 417 Query 421 AGAGAAAGATGAAGAGAAAATGGAGTTTGAATCGAAGAAATTGCAGAGCCTAGTGAAGGA 480 ||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||| Sbjct 418 AGAGAAAGATGAAGAGAAAATGGAGTTTGAATCGAAGAAGTTACAGAGCTTAGTGAAGGA 477 Query 481 GAAAGCTCTGTTTATATCAGAACTAGGGGCTCTTGCTGATAGTACTTCTCCAGGCGTTAT 540 ||||||||||||||||| ||||||||||||||||||||| ||| |||||| |||||||| Sbjct 478 AAAAGCTCTGTTTATATCGGAACTAGGGGCTCTTGCTGATGGTATTTCTCCTGGCGTTAT 537 Query 541 CAGATCGTTGGTGGCTTTAAAGGATAA-C-TAAACTAAA-TAGAAGAAGTAGAA 591 ||||||||||||||||||| |||| || | | || | || |||||||||||||| Sbjct 538 CAGATCGTTGGTGGCTTTAGAGGACAAACCTTAAGTTAAGTAGAAGAAGTAGAA 591 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28432527202 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5