BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478971
Length=507
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15352.1 | Symbols: ATCOX17, COX17 | cytochrome c oxidase 17... 708 0.0
AT1G53030.1 | Symbols: | Cytochrome C oxidase copper chaperone... 171 8e-42
> AT3G15352.1 | Symbols: ATCOX17, COX17 | cytochrome c oxidase
17 | chr3:5179413-5180665 FORWARD LENGTH=544
Length=544
Score = 708 bits (383), Expect = 0.0
Identities = 439/465 (94%), Gaps = 7/465 (2%)
Strand=Plus/Plus
Query 45 GTCGCCGACATTTTCACCGGTTCTCTGCTCTTTGATTCTTCCTCTGTAAAATCATTCAAA 104
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 83 GTCGCCGACATTTTCACCGGTTCTCTGCTCTTTGATTCTTCCTCTGCAAATTCATTCAAA 142
Query 105 GGATGAGTAATCAACCAGCACAAAACGGCTTGATTCCTTCACCCACTTCAGAGCCAAGCA 164
|||||| | |||| ||||||||||| || ||||||||| |||||||||||||||||||||
Sbjct 143 GGATGACTGATCAGCCAGCACAAAATGGATTGATTCCTCCACCCACTTCAGAGCCAAGCA 202
Query 165 AGGCTGCTGCCTCGGCAGAGACGAAACCAAAGAAGAGGATATGTTGTGCTTGCCCTGATA 224
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 203 AGGCTGCTGCCTCAGCAGAGACGAAACCAAAGAAGAGGATATGTTGTGCTTGCCCTGATA 262
Query 225 CCAAGAAGCTGAGAGATGAGTGCATTGTCGAGCATGGTGAATCGGCTTGCACTAAATGGA 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 263 CCAAGAAGCTGAGAGATGAGTGCATTGTCGAGCATGGTGAATCGGCTTGCACTAAATGGA 322
Query 285 TCGAGGCTCATAAAATGTGTCTCCGAGCAGAAGGTTTCAACGTCTGATACtttttttttt 344
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 323 TCGAGGCTCATAAAATTTGTCTCCGAGCAGAAGGTTTCAACGTCTGATACTTTTTTTTCT 382
Query 345 tCTCTTCTTAATACGTAATTTGATGG-TGGATCAAAAGGAATGAGCAACATA-GATTGTT 402
| | |||| ||||||||||||||||| | |||||||||||||||||||| | |||||||
Sbjct 383 T-T-TTCT-AATACGTAATTTGATGGATC-ATCAAAAGGAATGAGCAACAGAAGATTGTT 438
Query 403 CATCACCCGGGATGGGTTTAGGGTATAAAAACAAGAGATTATGTATGCATTTGGATACAA 462
|||||||||| ||||||||||||||||||| |||||||| ||||||||||||| ||||||
Sbjct 439 CATCACCCGGTATGGGTTTAGGGTATAAAAGCAAGAGATAATGTATGCATTTG-ATACAA 497
Query 463 AATCCCATTTTGTTGTGATTGAAAATAAAAAGAAACCATCTTTTC 507
|||||||||||| || |||||| ||||||||||||||||||||||
Sbjct 498 AATCCCATTTTGATGCGATTGATAATAAAAAGAAACCATCTTTTC 542
> AT1G53030.1 | Symbols: | Cytochrome C oxidase copper chaperone
(COX17) | chr1:19760001-19761452 REVERSE LENGTH=530
Length=530
Score = 171 bits (92), Expect = 8e-42
Identities = 132/152 (87%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 180 CAGAGACGAAACCAAAGAAGAGGATATGTTGTGCTTGCCCTGATACCAAGAAGCTGAGAG 239
||||||| ||||||||||||||||||||||||||||| |||||||| ||||| || ||||
Sbjct 156 CAGAGACAAAACCAAAGAAGAGGATATGTTGTGCTTGTCCTGATACAAAGAAACTTAGAG 215
Query 240 ATGAGTGCATTGTCGAGCATGGTGAATCGGCTTGCACTAAATGGATCGAGGCTCATAAAA 299
|||| |||||||| || || |||||||| |||||||| ||||||||||| |||||||
Sbjct 216 ATGAATGCATTGTAGAACACGGTGAATCCGCTTGCACGAAATGGATCGAAGCTCATATTT 275
Query 300 TGTGTCTCCGAGCAGAAGGTTTCAACGTCTGA 331
||||||| ||| |||| |||||||| || |||
Sbjct 276 TGTGTCTTCGATCAGAGGGTTTCAAAGTTTGA 307
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24212858854
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5