BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478973
Length=2177
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15355.1 | Symbols: UBC25, PFU1 | ubiquitin-conjugating enzy... 2828 0.0
> AT3G15355.1 | Symbols: UBC25, PFU1 | ubiquitin-conjugating enzyme
25 | chr3:5183739-5186929 FORWARD LENGTH=2209
Length=2209
Score = 2828 bits (1531), Expect = 0.0
Identities = 2008/2222 (90%), Gaps = 97/2222 (4%)
Strand=Plus/Plus
Query 1 tttctttgatcgatttcttcttcttcttcaggaaaattctctcgttttccgttttcagtt 60
||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||
Sbjct 39 TTTCTTTGATCGATTTCTTCTTCTTCTTCTGGAAAATTATCTCGTTTTCCGTTTTTAGTT 98
Query 61 ctttGCGTTTGGGATCGTTCAATGGAGTCCAACGTAGTGGAGATCG---CTCCTCCGGTC 117
||||| ||||||||||||||||||||| |||||||||||||||||| ||||||| | |
Sbjct 99 CTTTGAGTTTGGGATCGTTCAATGGAGCCCAACGTAGTGGAGATCGCTACTCCTCCTGCC 158
Query 118 GCTTCTTGCTC--G-A---G-A-G----CAAAGGCTGAAACTCCAGAAGTGATTGATGTG 165
||||||||||| | | | | | ||||||||||||||||||||||||||||||||
Sbjct 159 GCTTCTTGCTCGAGAATTCGAACGCCAACAAAGGCTGAAACTCCAGAAGTGATTGATGTG 218
Query 166 GAGGAATATGAAATGCAAAACGGTGGTGTTCTTAATGGCAACAATGTTGATAACAAGAAT 225
||||||||||| |||||||||||||||||| ||||||||||||||||||| | |||||
Sbjct 219 GAGGAATATGATTTGCAAAACGGTGGTGTTCCTAATGGCAACAATGTTGATTATAAGAAC 278
Query 226 AAAGGGAAGGCTATTGATTTTGATTCCGTTTCTTACGATG---A--G-CAAGATGATGAG 279
|||||||||||||| || ||||||||| | ||||||| || | | |||| ||||||
Sbjct 279 AAAGGGAAGGCTATAGACTTTGATTCCATGTCTTACGGTGACTATGGTGAAGAAGATGAG 338
Query 280 T-T--TGT----T-T-CGGGTGATGATTATGATTACCCTGGATCATCTCCAATATCAAAT 330
| | ||| | | | ||||||||||||| ||| |||| |||||||||| ||||||||
Sbjct 339 TATGCTGTGGGATCTCCTGGTGATGATTATGGTTATCCTGAATCATCTCCACTATCAAAT 398
Query 331 AGTTTGTTAGACCCAGA-TACTTTGATCTATGAAGACGACGAAAACTATTCCGAACAATA 389
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 399 AGTTTGTTAGACCCAGAGT-CTTTGATCTATGAAGACGACGAAAACTATTCCGAACAATA 457
Query 390 TGACTTTGAAATGGAGGAGGAAACTGACAATTACTCCATGTATCAAGACCTTTTCGATGG 449
||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||
Sbjct 458 TGACTTTGAAATGGAGGCGGAGCCTGATAATTACTCCATGTATCAAGACCTTTTCGATGG 517
Query 450 TAATGATATCCCAACTGGTGTGGAGGTTTCAATGGATTGGTTTCCAAATTCAGCTGACAA 509
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 TAAGGATATCCCAACTGGTGTGGAGGTTTCAATGGATTGGTTTCCAAATTCAGCTGACAA 577
Query 510 GGAATCAGCGAGTGGAAGCAGCAAATCGTCTAATAAGTCAGATGTTACCGG--TAACAGT 567
||||||||||||| || |||||||||||| || | | | | || || |||||||
Sbjct 578 GGAATCAGCGAGT---AGTAGCAAATCGTCTCAT--G-C-TA-ATAACGGGAATAACAGT 629
Query 568 TCCAAGAAAGCAACAAAAGGAAGTGGAATCCAATCTCAGTTTTCTTTCCCAGATATGGCA 627
||||||||||||||||||| |||||||||||| ||||| ||||| || ||||||||| |
Sbjct 630 TCCAAGAAAGCAACAAAAGCAAGTGGAATCCATTCTCAATTTTC-TT--CAGATATGGAA 686
Query 628 ACCCCTGTTGCTCAACCATGGAATGCTTTACCGCACAAAGCTGGAGGAGTCATACCAAAC 687
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 687 ACCCCTGTAGCTCAACCATGGAATGCTTTACCGCACAAAGCTGAAGGAGTCATACCAAAC 746
Query 688 TCTGCTTATGCCTTGCCACAGAACAGCAAGGCTTTTCAACCACCTTTTACTCTCGGTTCT 747
|||||||||||||||||||||||||||||||||||||||||||||| || || | |
Sbjct 747 TCTGCTTATGCCTTGCCACAGAACAGCAAGGCTTTTCAACCACCTTACGCTGTCCACTAT 806
Query 748 TCA-ACCTCCAAAACGT-ATTTTTCCAATCATTTTCAGCCTCAGACTCCTGATACCGTAT 805
||| ||| ||||| | |||||||||| || |||||||||||||||||||||||||||
Sbjct 807 TCAGCCCT-TAAAAC-TGCTTTTTCCAATTATCTTCAGCCTCAGACTCCTGATACCGTAT 864
Query 806 TGGGGGAGGCTCCAGCTCCTGCTGCAGGTTCTTCTGGTTTATTGCTTCCGGTACCACCAA 865
||||||||||||||||||||||||||||||||||||||||| || | |||||||
Sbjct 865 TGGGGGAGGCTCCAGCTCCTGCTGCAGGTTCTTCTGGTTTA----TT---G--CCACCAA 915
Query 866 ACACACCTGGTTTTAAAGGTTATGGTGCTCGGTATAGAGTGGAAG-AGGCTATATTACCT 924
||||||| ||||||||| || ||| |||||||| || || || || | |||||||||||
Sbjct 916 ACACACCCGGTTTTAAAAGTAATGCTGCTCGGTTTAAAGAGG-AGCCGCCTATATTACCT 974
Query 925 CCGGATGCTTCCAGAGTTAAGAGAAATATGGAGGATTTTCTTGGGCTTTATTTGTTTTTC 984
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 975 CCGGATGATTCCAGAGTTAAGAGAAATATGGAGGATTATCTTGGGCTTTATTTGTTTTTC 1034
Query 985 AAAAGATTTGACATCGTCGAAGATTTTTCAGATCACCACTATGCTTCTAAGGGAA-ATTC 1043
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1035 AAAAGATTTGACATCGTCGAAGATTTTTCAGATCACCACTATGCTTCTAAGGGAACA-AC 1093
Query 1044 TTCAAAGCAGCATTCAAAGGATTGGGCGAAAAGGATTCAAGACGAGTGGAAAATTCTTGA 1103
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1094 TTCAAAGCAGCATTCAAAGGATTGGGCGAAAAGGATCCAAGACGAGTGGAGAATTCTTGA 1153
Query 1104 GAAAGATTTACCAGATATGATATTTGTCAGAGCTTATGAATCTAGGATGGATCTCTTAAG 1163
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1154 GAAAGATTTACCAGAGATGATATTTGTCAGAGCTTATGAATCTAGGATGGATCTTTTAAG 1213
Query 1164 GGCTGTAATTATCGGAGCGCAAGGAACTCCATACCATGATGGTCTGTTCTTTTTTGATAT 1223
|||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1214 GGCTGTAATTATCGGAGCCCAAGGAACTCCCTACCATGATGGTCTCTTCTTTTTTGATAT 1273
Query 1224 CTTCTTCCCGGATACATACCCTTCTGTGCCACCGACTGTTCATTACCATTCTGGTGGGCT 1283
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1274 CTTCTTCCCGGATACATACCCTTCTACGCCACCGATTGTTCATTACCATTCTGGTGGGCT 1333
Query 1284 GAGAATCAACCCGAATCTGTACAATTGTGGGAAAGTCTGTCTGAGTCTTCTCGGCACTTG 1343
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1334 AAGAATCAACCCAAATCTGTACAATTGTGGGAAAGTGTGTCTGAGTCTTCTCGGCACTTG 1393
Query 1344 GAGTGGTAGCCAGAGGGAGAAATGGATCCCCAACACTTCCACAATGTTGCAGGTTCTTGT 1403
|||||||| |||||||||||||||||||||||||||||| || ||| | || ||||||||
Sbjct 1394 GAGTGGTAACCAGAGGGAGAAATGGATCCCCAACACTTCGACGATGCTACAAGTTCTTGT 1453
Query 1404 CTCGATCCAAGGTCTCATCTTAAACCAAAAACCTTACTTCAACGAGCCTGGCTACGAGAG 1463
||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1454 CTCGATCCAAGGTCTAATCTTAAATCAAAAACCTTACTTCAACGAGCCCGGCTACGAGAG 1513
Query 1464 TTCAGCGGGTTCTGCACATGGTGAGAGTAGCTCTAAGGCTTACAGCGAAAACACACTCCT 1523
||||| |||||||||||||||||||||| |||||| |||||||||||||||||| || |
Sbjct 1514 GTCAGCAGGTTCTGCACATGGTGAGAGTACCTCTAAAGCTTACAGCGAAAACACATTCAT 1573
Query 1524 ACTGTCTTTAAAGACTATGGTTTACACCATGAGGAGACCACCTAAGTATTTTGAAGACTT 1583
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1574 ACTGTCTTTAAAGACTATGGTTTACACCATGAGGAGACCACCCAAGTATTTTGAAGACTT 1633
Query 1584 TGCATATGGACATTTCTTCAGCTGTGCTCACGACGTGTTGAAGGCGTGTAATGCTTATAG 1643
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1634 TGCGTATGGACATTTCTTCAGCTGTGCTCACGACGTGTTGAAGGCGTGTAATGCTTACAG 1693
Query 1644 AAACGGAGGTATACCGGGACT-TCTGGTGAAGGGGGCTCAAGATGTGGAAGAGAATAGCG 1702
|||||||| || ||||||| | ||||||||||||||||| ||||||||||||||||||||
Sbjct 1694 AAACGGAGCTACACCGGGA-TATCTGGTGAAGGGGGCTCCAGATGTGGAAGAGAATAGCG 1752
Query 1703 CGAACAGT-AGCTCTAAGAAGTTTAGGACAGATGTGGCTACCTTTGTGGAGACAGTGCTG 1761
|| || | |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1753 CGGGCA-TGAGCTCTCTGAAGTTTAGGACAGATGTGGCTACCTTTGTGGAGACAGTGCTG 1811
Query 1762 TTGAAAGAGTTTATTCTTCTAGGTGTCCTTGGTCTCGAACCGGAAGGAGAAGACAAAGCA 1821
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||
Sbjct 1812 TTGAAAGAGTTTATTCTTCTAGGTGTCCTTGGTCTCGAACCGGAAGAAGAAGAAAAAACA 1871
Query 1822 CCTGAGACTAACAA-CGTTGCAGAGAGTAGCCACAAT--ACCAGATCAAGCG-CCAAGAG 1877
|||||||||| || |||||||||||||||| | ||| ||||||||||| | |||||||
Sbjct 1872 CCTGAGACTAT-AATCGTTGCAGAGAGTAGC-A-AATGTACCAGATCAAG-GTCCAAGAG 1927
Query 1878 AGACAGAGTTTCTTCTAGTTGATCTCCATGGCTCC-tttttttt-tCCCTTAATTTTTCT 1935
||||||||||||||||||||||||||||| ||||| |||||||| ||| |||||||||||
Sbjct 1928 AGACAGAGTTTCTTCTAGTTGATCTCCATTGCTCCCTTTTTTTTGTCC-TTAATTTTTCT 1986
Query 1936 TAATTTCTGAAGAAACCAACCGGTGACTTAATTAGTTTCTCCTTTTCTTACAATCATGGA 1995
||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||
Sbjct 1987 TAATTTCTGAAGAAACC----GGTGACTTAATTAGTTTCTCCCTT-CTTACAATCATGGA 2041
Query 1996 TCCTCTTTTTTCCTCTTAACTATGACATAAATCTTAAAAGACTATTGAGAACTGAGAAGT 2055
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2042 TCCTCTTTTTTTCTCTTAACTATGACATAAATCTTAAAAGACTATTGAGAACTGAGAAGT 2101
Query 2056 CACTCTCATTTGTACAGTTGCCTTTACCAGTCAGATTTATTATTATTATAGCCTCAATTT 2115
||||||||| ||||||||| |||||| |||||||||||||||| | ||||||||||
Sbjct 2102 CACTCTCATATGTACAGTTCCCTTTATCAGTCAGATTTATTAT-A-----GCCTCAATTT 2155
Query 2116 TCTGAGCTACCTTTTTCACAGAGAAAGTGAGTATAAGTCAACGATACAAGGTTTAGATTT 2175
||||||||||| | ||||| ||||||| |||||||||||||||||||| |||||
Sbjct 2156 TCTGAGCTACC------A--GAGAA-GTGAGTAAAAGTCAACGATACAAGGTTTGGATTT 2206
Query 2176 TG 2177
||
Sbjct 2207 TG 2208
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107981372295
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5