BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg478973 Length=2177 Score E Sequences producing significant alignments: (Bits) Value AT3G15355.1 | Symbols: UBC25, PFU1 | ubiquitin-conjugating enzy... 2828 0.0 > AT3G15355.1 | Symbols: UBC25, PFU1 | ubiquitin-conjugating enzyme 25 | chr3:5183739-5186929 FORWARD LENGTH=2209 Length=2209 Score = 2828 bits (1531), Expect = 0.0 Identities = 2008/2222 (90%), Gaps = 97/2222 (4%) Strand=Plus/Plus Query 1 tttctttgatcgatttcttcttcttcttcaggaaaattctctcgttttccgttttcagtt 60 ||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||| Sbjct 39 TTTCTTTGATCGATTTCTTCTTCTTCTTCTGGAAAATTATCTCGTTTTCCGTTTTTAGTT 98 Query 61 ctttGCGTTTGGGATCGTTCAATGGAGTCCAACGTAGTGGAGATCG---CTCCTCCGGTC 117 ||||| ||||||||||||||||||||| |||||||||||||||||| ||||||| | | Sbjct 99 CTTTGAGTTTGGGATCGTTCAATGGAGCCCAACGTAGTGGAGATCGCTACTCCTCCTGCC 158 Query 118 GCTTCTTGCTC--G-A---G-A-G----CAAAGGCTGAAACTCCAGAAGTGATTGATGTG 165 ||||||||||| | | | | | |||||||||||||||||||||||||||||||| Sbjct 159 GCTTCTTGCTCGAGAATTCGAACGCCAACAAAGGCTGAAACTCCAGAAGTGATTGATGTG 218 Query 166 GAGGAATATGAAATGCAAAACGGTGGTGTTCTTAATGGCAACAATGTTGATAACAAGAAT 225 ||||||||||| |||||||||||||||||| ||||||||||||||||||| | ||||| Sbjct 219 GAGGAATATGATTTGCAAAACGGTGGTGTTCCTAATGGCAACAATGTTGATTATAAGAAC 278 Query 226 AAAGGGAAGGCTATTGATTTTGATTCCGTTTCTTACGATG---A--G-CAAGATGATGAG 279 |||||||||||||| || ||||||||| | ||||||| || | | |||| |||||| Sbjct 279 AAAGGGAAGGCTATAGACTTTGATTCCATGTCTTACGGTGACTATGGTGAAGAAGATGAG 338 Query 280 T-T--TGT----T-T-CGGGTGATGATTATGATTACCCTGGATCATCTCCAATATCAAAT 330 | | ||| | | | ||||||||||||| ||| |||| |||||||||| |||||||| Sbjct 339 TATGCTGTGGGATCTCCTGGTGATGATTATGGTTATCCTGAATCATCTCCACTATCAAAT 398 Query 331 AGTTTGTTAGACCCAGA-TACTTTGATCTATGAAGACGACGAAAACTATTCCGAACAATA 389 ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| Sbjct 399 AGTTTGTTAGACCCAGAGT-CTTTGATCTATGAAGACGACGAAAACTATTCCGAACAATA 457 Query 390 TGACTTTGAAATGGAGGAGGAAACTGACAATTACTCCATGTATCAAGACCTTTTCGATGG 449 ||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||| Sbjct 458 TGACTTTGAAATGGAGGCGGAGCCTGATAATTACTCCATGTATCAAGACCTTTTCGATGG 517 Query 450 TAATGATATCCCAACTGGTGTGGAGGTTTCAATGGATTGGTTTCCAAATTCAGCTGACAA 509 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 518 TAAGGATATCCCAACTGGTGTGGAGGTTTCAATGGATTGGTTTCCAAATTCAGCTGACAA 577 Query 510 GGAATCAGCGAGTGGAAGCAGCAAATCGTCTAATAAGTCAGATGTTACCGG--TAACAGT 567 ||||||||||||| || |||||||||||| || | | | | || || ||||||| Sbjct 578 GGAATCAGCGAGT---AGTAGCAAATCGTCTCAT--G-C-TA-ATAACGGGAATAACAGT 629 Query 568 TCCAAGAAAGCAACAAAAGGAAGTGGAATCCAATCTCAGTTTTCTTTCCCAGATATGGCA 627 ||||||||||||||||||| |||||||||||| ||||| ||||| || ||||||||| | Sbjct 630 TCCAAGAAAGCAACAAAAGCAAGTGGAATCCATTCTCAATTTTC-TT--CAGATATGGAA 686 Query 628 ACCCCTGTTGCTCAACCATGGAATGCTTTACCGCACAAAGCTGGAGGAGTCATACCAAAC 687 |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 687 ACCCCTGTAGCTCAACCATGGAATGCTTTACCGCACAAAGCTGAAGGAGTCATACCAAAC 746 Query 688 TCTGCTTATGCCTTGCCACAGAACAGCAAGGCTTTTCAACCACCTTTTACTCTCGGTTCT 747 |||||||||||||||||||||||||||||||||||||||||||||| || || | | Sbjct 747 TCTGCTTATGCCTTGCCACAGAACAGCAAGGCTTTTCAACCACCTTACGCTGTCCACTAT 806 Query 748 TCA-ACCTCCAAAACGT-ATTTTTCCAATCATTTTCAGCCTCAGACTCCTGATACCGTAT 805 ||| ||| ||||| | |||||||||| || ||||||||||||||||||||||||||| Sbjct 807 TCAGCCCT-TAAAAC-TGCTTTTTCCAATTATCTTCAGCCTCAGACTCCTGATACCGTAT 864 Query 806 TGGGGGAGGCTCCAGCTCCTGCTGCAGGTTCTTCTGGTTTATTGCTTCCGGTACCACCAA 865 ||||||||||||||||||||||||||||||||||||||||| || | ||||||| Sbjct 865 TGGGGGAGGCTCCAGCTCCTGCTGCAGGTTCTTCTGGTTTA----TT---G--CCACCAA 915 Query 866 ACACACCTGGTTTTAAAGGTTATGGTGCTCGGTATAGAGTGGAAG-AGGCTATATTACCT 924 ||||||| ||||||||| || ||| |||||||| || || || || | ||||||||||| Sbjct 916 ACACACCCGGTTTTAAAAGTAATGCTGCTCGGTTTAAAGAGG-AGCCGCCTATATTACCT 974 Query 925 CCGGATGCTTCCAGAGTTAAGAGAAATATGGAGGATTTTCTTGGGCTTTATTTGTTTTTC 984 ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 975 CCGGATGATTCCAGAGTTAAGAGAAATATGGAGGATTATCTTGGGCTTTATTTGTTTTTC 1034 Query 985 AAAAGATTTGACATCGTCGAAGATTTTTCAGATCACCACTATGCTTCTAAGGGAA-ATTC 1043 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 1035 AAAAGATTTGACATCGTCGAAGATTTTTCAGATCACCACTATGCTTCTAAGGGAACA-AC 1093 Query 1044 TTCAAAGCAGCATTCAAAGGATTGGGCGAAAAGGATTCAAGACGAGTGGAAAATTCTTGA 1103 |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| Sbjct 1094 TTCAAAGCAGCATTCAAAGGATTGGGCGAAAAGGATCCAAGACGAGTGGAGAATTCTTGA 1153 Query 1104 GAAAGATTTACCAGATATGATATTTGTCAGAGCTTATGAATCTAGGATGGATCTCTTAAG 1163 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1154 GAAAGATTTACCAGAGATGATATTTGTCAGAGCTTATGAATCTAGGATGGATCTTTTAAG 1213 Query 1164 GGCTGTAATTATCGGAGCGCAAGGAACTCCATACCATGATGGTCTGTTCTTTTTTGATAT 1223 |||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| Sbjct 1214 GGCTGTAATTATCGGAGCCCAAGGAACTCCCTACCATGATGGTCTCTTCTTTTTTGATAT 1273 Query 1224 CTTCTTCCCGGATACATACCCTTCTGTGCCACCGACTGTTCATTACCATTCTGGTGGGCT 1283 ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 1274 CTTCTTCCCGGATACATACCCTTCTACGCCACCGATTGTTCATTACCATTCTGGTGGGCT 1333 Query 1284 GAGAATCAACCCGAATCTGTACAATTGTGGGAAAGTCTGTCTGAGTCTTCTCGGCACTTG 1343 ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1334 AAGAATCAACCCAAATCTGTACAATTGTGGGAAAGTGTGTCTGAGTCTTCTCGGCACTTG 1393 Query 1344 GAGTGGTAGCCAGAGGGAGAAATGGATCCCCAACACTTCCACAATGTTGCAGGTTCTTGT 1403 |||||||| |||||||||||||||||||||||||||||| || ||| | || |||||||| Sbjct 1394 GAGTGGTAACCAGAGGGAGAAATGGATCCCCAACACTTCGACGATGCTACAAGTTCTTGT 1453 Query 1404 CTCGATCCAAGGTCTCATCTTAAACCAAAAACCTTACTTCAACGAGCCTGGCTACGAGAG 1463 ||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 1454 CTCGATCCAAGGTCTAATCTTAAATCAAAAACCTTACTTCAACGAGCCCGGCTACGAGAG 1513 Query 1464 TTCAGCGGGTTCTGCACATGGTGAGAGTAGCTCTAAGGCTTACAGCGAAAACACACTCCT 1523 ||||| |||||||||||||||||||||| |||||| |||||||||||||||||| || | Sbjct 1514 GTCAGCAGGTTCTGCACATGGTGAGAGTACCTCTAAAGCTTACAGCGAAAACACATTCAT 1573 Query 1524 ACTGTCTTTAAAGACTATGGTTTACACCATGAGGAGACCACCTAAGTATTTTGAAGACTT 1583 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1574 ACTGTCTTTAAAGACTATGGTTTACACCATGAGGAGACCACCCAAGTATTTTGAAGACTT 1633 Query 1584 TGCATATGGACATTTCTTCAGCTGTGCTCACGACGTGTTGAAGGCGTGTAATGCTTATAG 1643 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1634 TGCGTATGGACATTTCTTCAGCTGTGCTCACGACGTGTTGAAGGCGTGTAATGCTTACAG 1693 Query 1644 AAACGGAGGTATACCGGGACT-TCTGGTGAAGGGGGCTCAAGATGTGGAAGAGAATAGCG 1702 |||||||| || ||||||| | ||||||||||||||||| |||||||||||||||||||| Sbjct 1694 AAACGGAGCTACACCGGGA-TATCTGGTGAAGGGGGCTCCAGATGTGGAAGAGAATAGCG 1752 Query 1703 CGAACAGT-AGCTCTAAGAAGTTTAGGACAGATGTGGCTACCTTTGTGGAGACAGTGCTG 1761 || || | |||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1753 CGGGCA-TGAGCTCTCTGAAGTTTAGGACAGATGTGGCTACCTTTGTGGAGACAGTGCTG 1811 Query 1762 TTGAAAGAGTTTATTCTTCTAGGTGTCCTTGGTCTCGAACCGGAAGGAGAAGACAAAGCA 1821 |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| || Sbjct 1812 TTGAAAGAGTTTATTCTTCTAGGTGTCCTTGGTCTCGAACCGGAAGAAGAAGAAAAAACA 1871 Query 1822 CCTGAGACTAACAA-CGTTGCAGAGAGTAGCCACAAT--ACCAGATCAAGCG-CCAAGAG 1877 |||||||||| || |||||||||||||||| | ||| ||||||||||| | ||||||| Sbjct 1872 CCTGAGACTAT-AATCGTTGCAGAGAGTAGC-A-AATGTACCAGATCAAG-GTCCAAGAG 1927 Query 1878 AGACAGAGTTTCTTCTAGTTGATCTCCATGGCTCC-tttttttt-tCCCTTAATTTTTCT 1935 ||||||||||||||||||||||||||||| ||||| |||||||| ||| ||||||||||| Sbjct 1928 AGACAGAGTTTCTTCTAGTTGATCTCCATTGCTCCCTTTTTTTTGTCC-TTAATTTTTCT 1986 Query 1936 TAATTTCTGAAGAAACCAACCGGTGACTTAATTAGTTTCTCCTTTTCTTACAATCATGGA 1995 ||||||||||||||||| ||||||||||||||||||||| || |||||||||||||| Sbjct 1987 TAATTTCTGAAGAAACC----GGTGACTTAATTAGTTTCTCCCTT-CTTACAATCATGGA 2041 Query 1996 TCCTCTTTTTTCCTCTTAACTATGACATAAATCTTAAAAGACTATTGAGAACTGAGAAGT 2055 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2042 TCCTCTTTTTTTCTCTTAACTATGACATAAATCTTAAAAGACTATTGAGAACTGAGAAGT 2101 Query 2056 CACTCTCATTTGTACAGTTGCCTTTACCAGTCAGATTTATTATTATTATAGCCTCAATTT 2115 ||||||||| ||||||||| |||||| |||||||||||||||| | |||||||||| Sbjct 2102 CACTCTCATATGTACAGTTCCCTTTATCAGTCAGATTTATTAT-A-----GCCTCAATTT 2155 Query 2116 TCTGAGCTACCTTTTTCACAGAGAAAGTGAGTATAAGTCAACGATACAAGGTTTAGATTT 2175 ||||||||||| | ||||| ||||||| |||||||||||||||||||| ||||| Sbjct 2156 TCTGAGCTACC------A--GAGAA-GTGAGTAAAAGTCAACGATACAAGGTTTGGATTT 2206 Query 2176 TG 2177 || Sbjct 2207 TG 2208 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 107981372295 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5