BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478974
Length=519
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15357.1 | Symbols: | unknown protein; INVOLVED IN: biologi... 619 7e-177
> AT3G15357.1 | Symbols: | unknown protein; INVOLVED IN: biological_process
unknown; LOCATED IN: chloroplast; EXPRESSED IN:
shoot apex, hypocotyl, root, leaf; Has 6931 Blast hits to
2036 proteins in 230 species: Archae - 7; Bacteria - 933; Metazoa
- 1824; Fungi - 836; Plants - 482; Viruses - 218; Other
Eukaryotes - 2631 (source: NCBI BLink). | chr3:5187116-5187710
FORWARD LENGTH=595
Length=595
Score = 619 bits (335), Expect = 7e-177
Identities = 460/516 (89%), Gaps = 26/516 (5%)
Strand=Plus/Plus
Query 15 ACT-CGATCAAAAATGGCTTCAGCTTCATCATCGGCGGCGAGATCACTCATCCGTGACGG 73
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 36 ACTGCGATCAAAAATGGCTTCAGCTTCATCATCGGCGGCGAGATCACTCATCCGCGACGG 95
Query 74 AAAATCAGTGG-CGAATCTAATCCTCCGTGGACGTACGACCAATCTTACTGAGACTGTGC 132
|||||| || | |||||||| ||||||||||||||| || |||||| || ||||| || |
Sbjct 96 AAAATC-GTTGACGAATCTATTCCTCCGTGGACGTAAGATCAATCTCACCGAGACAGTAC 154
Query 133 AGAACAATAGACCGGCCATTCGATCTCTGCTTTGGTTTAACCAGACGGCGCCGGCGGCTA 192
|||||||| ||||||||||||||||||||||||| |||||||||| | | | ||||||||
Sbjct 155 AGAACAATGGACCGGCCATTCGATCTCTGCTTTGTTTTAACCAGATG-C-C-GGCGGCTA 211
Query 193 TCCAATACCCTGTTTTCTCTGAAACTTTTCCGGTTATGCAATCCGGTTTACGTGTCGGCT 252
|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 212 GCCAATACCCTGTTTACTCTGAAACTTTTCCGGTTATGAAATCCGGTTTACGTGTCGGCT 271
Query 253 TCGTTCAGAAGGAGG--GTTTCTCGGAGAGGGTAGGGAAAATGGAGGCGGCTCATGGAAA 310
||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||
Sbjct 272 TCGTTCAGAAGGAGGCCGTTTC--GGAGAGAGTAGGGAAAATGGAGGCGGCTCATGGAAA 329
Query 311 GCGAGTGGTGGACAACGACGAAGCTGATTCAGAGGAGGAGACAGATTTTGATGAGGAAGA 370
|||||||||||||||| | || ||||||||||||||||| || ||||||||||| || ||
Sbjct 330 GCGAGTGGTGGACAACAAAGATGCTGATTCAGAGGAGGACACGGATTTTGATGAAGACGA 389
Query 371 GATTGATGACGTGGA-TATCGACGACGATGAAGATTTTGATGATATTGACGATGATGAGG 429
|||||||||||| || | | || ||||||||||||| ||| || | || ||||||||
Sbjct 390 GATTGATGACGTTGACTTT-GAAGACGATGAAGATTCTGACGA-A--GA---TGATGAGG 442
Query 430 AAGAGGAGGATGACAAGTACTCAAGGAAGAAGAAGTAACTCTTTTAATTCTTCACAAAAT 489
|||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||
Sbjct 443 AAGAGGAGGATGACAAGTACACAAGGAAGAAGAAGTAACTCTTC-A-TTCTTCACAAAAT 500
Query 490 GCTT-CTGTTTTT-G----CTTGAGATTAATGGCTT 519
|||| |||||||| | |||||||||||||||||
Sbjct 501 GCTTTCTGTTTTTTGTTTGCTTGAGATTAATGGCTT 536
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24815668618
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5