BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478975
Length=859
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15370.1 | Symbols: ATEXPA12, EXP12, ATEXP12, ATHEXP ALPHA 1... 1354 0.0
> AT3G15370.1 | Symbols: ATEXPA12, EXP12, ATEXP12, ATHEXP ALPHA
1.24, EXPA12 | expansin 12 | chr3:5190572-5192077 FORWARD LENGTH=931
Length=931
Score = 1354 bits (733), Expect = 0.0
Identities = 817/859 (95%), Gaps = 0/859 (0%)
Strand=Plus/Plus
Query 1 TATCTATGGATATGAAAGGAAAATATTTGGTAACGGTTATTCTCTTGGTTGGTACGTTAA 60
||| |||||||||||| |||| ||| || ||||||||||||||||||||| |||||||||
Sbjct 73 TATATATGGATATGAAGGGAACATACTTAGTAACGGTTATTCTCTTGGTTAGTACGTTAA 132
Query 61 GTGTGGGGATGTGTTCTAACGGTTGGATAAGAGCTCATGCAACGTATTATGGTGTTAATG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 133 GTGTGGGGATGTGTTCTAACGGTTGGATAAGAGCTCATGCAACGTATTATGGTGTCAATG 192
Query 121 ATAGCCCTGCTTCACTTGGAGGAGCTTGTGGGTATGACAATCCGTACCACGCCGGATTCG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 193 ATAGCCCTGCTTCACTTGGAGGAGCTTGTGGGTATGACAATCCGTACCACGCCGGATTCG 252
Query 181 GAGCCCACACGGCGGCGCTAAGCGGTGCGTTATTCAGAAGCGGCGAGTCTTGCGGTGGGT 240
|||| |||||||||||||||||||||| | ||||||||||||| ||||| ||||||||||
Sbjct 253 GAGCACACACGGCGGCGCTAAGCGGTGAGCTATTCAGAAGCGGTGAGTCATGCGGTGGGT 312
Query 241 GCTACCAGGTGAGGTGCGACTATCCGGCGGATCCTAAGTGGTGTCTCCGTGGAGCCACCG 300
||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||
Sbjct 313 GCTACCAGGTGAGGTGCGACTTTCCGGCGGATCCTAAGTGGTGTCTCCGAGGAGCCGCCG 372
Query 301 TGAGGGTGACGGCTACAAACTTTTGTCCGTCGAACAACAATAATGGTTGGTGCAATCTCC 360
||| ||||||||||||||||||||| || |||| |||||||||||||||||||||||||
Sbjct 373 TGACGGTGACGGCTACAAACTTTTGCCCAACGAATAACAATAATGGTTGGTGCAATCTCC 432
Query 361 CTCGCCATCACTTTGACATGTCCTCCCCAGCTTTCTTCCGAATCGCCCGTCGCGGCAATG 420
|||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||
Sbjct 433 CTCGCCATCACTTTGACATGTCCTCCCCCGCTTTCTTCCGCATTGCCCGTCGCGGCAATG 492
Query 421 AAGGCATCGTCCCTGTCTTCTATCGCCGGGTGGGATGCAAAAGAAGAGGAGGCGTGAGGT 480
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 AAGGCATCGTCCCCGTCTTCTATCGCCGGGTGGGATGCAAAAGAAGAGGAGGCGTGAGGT 552
Query 481 TTACGTTGAGAGGGCAAGGTAACTTCAATATGGTAATGATCTCAAACGTTGGCGGTGGCG 540
| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 553 TCACGATGAGAGGGCAAGGTAACTTCAATATGGTAATGATCTCAAACGTTGGTGGTGGCG 612
Query 541 GCTCGGTGAGAGCGGTAGCGGTAAGAGGCTCAAAGGGAAAGACTTGGCTTCAGATGACCC 600
||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 613 GCTCGGTGAGATCAGTAGCGGTGAGAGGCTCAAAGGGAAAGACTTGGCTTCAGATGACCC 672
Query 601 GTAATTGGGGTGCCAACTGGCAGAGCTCCGGCGATCTCCGGGGACAGAGACTCTCCTTCA 660
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 673 GTAATTGGGGTGCCAACTGGCAGAGCTCCGGTGATCTCCGGGGACAGAGACTCTCCTTCA 732
Query 661 AAGTTACTCTGACTGACAGCAAAACGCAGACGTTTTTGAACGTTGTTCCTTCTTCTTGGT 720
||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 733 AAGTTACTCTGACGGACAGCAAAACGCAGACATTTTTGAACGTTGTCCCTTCTTCTTGGT 792
Query 721 GGTTTGGCCAAACCTTCTCTTCTCGAGGACGCCAGTTCGTTTAACTACAAAACTAAGTCG 780
||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||
Sbjct 793 GGTTTGGCCAAACCTTCTCTTCTCGAGGAAGACAATTCGTTTAACTACAAAACTAAGTCG 852
Query 781 TGCTCTGGTCAAAACGCAATTCTTTGCTTGTTTATGAACTTGCCCTTGTTTTAATTGGGC 840
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 853 TGCTCTGGTCAAAACGCAATTCTTTGCTTATTTCTGAACTTGCCCTTGTTTTAATTGGGC 912
Query 841 AATGTTCCTTCGTTTTTCT 859
| |||||||| |||| |||
Sbjct 913 AGTGTTCCTTTGTTTCTCT 931
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41895278598
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5