BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478976
Length=2330
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15380.1 | Symbols: | Plasma-membrane choline transporter f... 3805 0.0
> AT3G15380.1 | Symbols: | Plasma-membrane choline transporter
family protein | chr3:5193228-5196591 FORWARD LENGTH=2350
Length=2350
Score = 3805 bits (2060), Expect = 0.0
Identities = 2250/2340 (96%), Gaps = 20/2340 (1%)
Strand=Plus/Plus
Query 1 TGTTCTCTCCAAAATTCCTATTTTTGACCTCGAGGGTTTTTCAGACTGTGAAGAAGAGAC 60
|||||||||| |||||||| |||||| ||||||||||||||||||||| ||||||||
Sbjct 20 TGTTCTCTCCGAAATTCCTTTTTTTGGTCTCGAGGGTTTTTCAGACTGT---GAAGAGAC 76
Query 61 ATAGCTGTGGCAAAGATGAGAGGACCTTTGGGAGCTGTGATTGGAAGATATACTTCAAGT 120
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 77 ATAGCTGTGGCAAAGATGAGAGGACCTTTAGGAGCAGTGATTGGAAGATATACTTCAAGT 136
Query 121 GATGGGAGTGCTCCAAATGATGGGATCATCAAGCACAATAGAAAGTGCAGAGATATTACG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 137 GATGGGAGTGCTCCAAATGATGGGATCATCAAGCACAATAGAAAGTGCAGAGATATTACG 196
Query 181 TTTCTTGTCATCTTCATTGCCTTTTGGGTTTCAATGATTGTCAATTCCAGCTTTGGTTTC 240
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 197 TTTCTCATCATCTTCATTGCCTTTTGGGTTTCAATGATTGTCAATTCCAGCTTTGGTTTC 256
Query 241 AACCAAGGCAACCCCTTAAGACTCACTTATGGATTGGACTATGAAGGGAATGTGTGTGGT 300
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 257 AACCAAGGCAACCCATTAAGACTCACATATGGATTGGACTATGAAGGGAATGTGTGTGGT 316
Query 301 AGCAAGCATCGTCACCGTGACCTTACTCAACTTGAGCTTAGATATTGGTTAAACCCTAAC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 AGCAAGCATCGTCACCGTGACCTTACTCAACTTGAGCTTAGATATTGGTTAAACCCTAAC 376
Query 361 CAAGTTTATGAAAGTGGTTTGAAAGATGGGGAACTCAAATTGGCTAATGCTAGAACTATT 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 377 CAAGTTTATGAAAGTGGTTTGAAAGATGGGGAACTTAAATTGGCTAATGCTAGAACTATT 436
Query 421 TGTCTCTTGGATTGTCCTGCACCAACTGATGATACTCTCAACTGGGTCTGTGACTATCCT 480
|||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 437 TGTCTCTTGGATTGCCCTGCACCTTCTGATGATACTCTCAACTGGGTATGTGACTATCCT 496
Query 481 GATGGCGAGATTCGTCTCAAGATGAATGATTGGATCGATAGGAATTACGATTACTTTGAG 540
|| ||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||
Sbjct 497 GACGGCGAGATTCGTCTCAAGATGAATGATTGGATCGATAGGAACTATGATTATTTTGAG 556
Query 541 TTTCTTACTCCAGAAATGAGGAATTCTTCTCTTCAGCTTCAGGGTCCTTGTTACCCTGAA 600
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 557 TTTCTTACTCCAGAAATGAGGAATTCCTCTCTTCAGCTTCAGGGTCCTTGTTACCCTGTA 616
Query 601 ATATTCCCTAGTGTGAATGTTTATTGGAGCTGCCAATATATTGCTCGTGCTTCGAATTCA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 617 ATATTCCCTAGTGTGAATGTTTATTGGAGCTGCCAATATATTGCTCGTGCTTCAAATTCA 676
Query 661 TCCTTGCGCCACTGGCAGCAGATGGGTGGTGTGAATATTCAAGAGGACATGATCATAGAC 720
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 677 TCCTTACGCCACTGGCAGCAGATGGGTGGTGTTAATATTCAAGAGGACATGATCATAGAC 736
Query 721 AAATCAATTAGAAGGTCAATGAATTCTCGTGCCTCAGTTCTAAAGCGTTATGTGGCTGAT 780
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 737 AAATCAATTAGAAGGTCAATGAACTCTCGTGCCTCAGTTCTAAAGCGTTATGTGGCTGAT 796
Query 781 ATTGGGAAGTCATGGCCAGTATTGATCGTTTGTGGAGGCCTTGTCCCACTGTTTCTATCC 840
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 797 ATTGGGAAGTCATGGCCAGTATTGATCGTTTGTGGAGGCCTTGTTCCACTGTTTCTATCC 856
Query 841 ATTATCTGGCTGCTTCTTATTCGACATTTTGTTGCCGCCATGCCCTGGATAACTGTTGTC 900
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 857 ATTATTTGGCTGCTTCTTATTCGACATTTTGTTGCCGCCATGCCCTGGATAACTGTTGTC 916
Query 901 CTTTTCAACATGCTCTTAATATCAGTGACAATGTTCTATTACTTAAAAGCTGGATGGATT 960
|||||||||||||||||||||||||| ||| ||||||||||| | |||||||||||||||
Sbjct 917 CTTTTCAACATGCTCTTAATATCAGTCACAGTGTTCTATTACCTGAAAGCTGGATGGATT 976
Query 961 GGGAATGATGCTGTAACACCTATTATTGGTGAGCATGACCCATACTTTCATGTGTATGGT 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 977 GGGAATGATGCTGTAACACCTATTATTGGTGAGCATGACCCATACTTTCATGTGTATGGT 1036
Query 1021 CGAGAGCTGACTCATGTTCGTGGAGTCGCCATTCTGATGACTTTTATCTCAGTTGTTGCT 1080
||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1037 CGAGAACTGACTCATGTTCGTGGAGTTGCCATTCTGATGACTTTTATCTCTGTTGTTGCT 1096
Query 1081 ATTCTCACTTCAATCGCCATTATCCGCCGAATTCTCATGGC-A-A-CA----TC-A-GTA 1131
|||||||||||||| |||||||||||||||||||||||||| | | || || | |||
Sbjct 1097 ATTCTCACTTCAATTGCCATTATCCGCCGAATTCTCATGGCAACATCAGTCCTCAAGGTA 1156
Query 1132 GCTGCTAAAGTAATTGGAGAAGTTCAAGCGCTTATTATATTCCCGGCTATACCGTTCGCG 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1157 GCTGCTAAAGTAATTGGAGAAGTTCAAGCGCTTATTATATTCCCGGCTATACCGTTCGCG 1216
Query 1192 ATGCTCGCGATATTCTATATGTTCTGGTTGTCAGCGGCTCTCCATCTATTCAGCTCTGGT 1251
||||| || |||||||||||||||||| | ||||||||||||||||| ||||| ||||||
Sbjct 1217 ATGCTAGCAATATTCTATATGTTCTGGATATCAGCGGCTCTCCATCTCTTCAGTTCTGGT 1276
Query 1252 CAAGTTGTTCAGAACAACTGCAACAACACTAACTGCTGCGCATATGATCTCGTGTTAAAG 1311
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1277 CAAGTTGTTCAGAACAACTGCAACAACACTAACTGCTGTGCGTATGATCTCGTGTTAAAG 1336
Query 1312 AAAGTGAATTGTGACCGTTGTTGCGGTTACAGCATACGTTACACTCCTCACATCACCATT 1371
||||| ||||||||||||||||||||||| ||||||| |||||| |||||||||||||||
Sbjct 1337 AAAGTTAATTGTGACCGTTGTTGCGGTTATAGCATACATTACACCCCTCACATCACCATT 1396
Query 1372 GCTATATTCTTCCACCTGTTTGGTTGCTATTGGGCTACACAGTTCTTCATTGCATCTTCC 1431
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1397 GCTATATTCTTCCACCTGTTTGGTTGCTATTGGGCTACACAGTTCTTCATTGCATCTTCT 1456
Query 1432 GCGACAGTGATTGCTGGCTCTGTTGCCTCCTATTATTGGGCTCAAGGGGAAGCATCGCCA 1491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1457 GCGACAGTGATTGCTGGCTCTGTTGCCTCCTATTATTGGGCTCAAGGGGAAGCATCGCCA 1516
Query 1492 GAGATACCGTTTCTTCCTGTTTTTGCCTCAATGAAGCGGCTTGCACGCTACAACCTAGGA 1551
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1517 GAGATACCGTTTCTTCCTGTTTTCGCATCAATGAAGCGGCTTGCACGCTACAACCTAGGA 1576
Query 1552 TCTGTGGCTCTTGGTTCACTCATTGTCTCTTTTGTTGAGTCTGTTCGGTTCATTCTCGAA 1611
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1577 TCCGTGGCTCTTGGTTCACTCATTGTCTCTTTTGTTGAGTCTGTTCGGTTCATTCTCGAA 1636
Query 1612 GCAATTCGTCGTAGAACAAAAGTAAGCGGGACCACACCTGATCACTGGTTTTGGAGAATG 1671
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1637 GCAATTCGTCGTAAAACAAAAGTAAGCGGGACCATACCTGATCACTGGTTTTGGAGAATG 1696
Query 1672 GCTCATTACACTTCACGTGGTTGTCTCAAAAGCGTGGAGTGGACCATCAAATCGGTTAAC 1731
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1697 GCTCATTACACTTCACGTGGTTGTCTCAAAAGTGTGGAGTGGACCATCAAATCGGTTAAC 1756
Query 1732 CGTAATGCCTACATAATGATTGCTATAACAGGGAAAAGCTTCTGCAAATCGTCTGCAATA 1791
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1757 CGTAATGCCTACATAATGATTGCTATAACAGGGAAAAGCTTCTGCAAATCGTCTGCAATC 1816
Query 1792 GCGACAGAGCTGATCATAAGCAACATTCTGAGGATAGGGAAAGTTAATGTGATAGGAGAT 1851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1817 GCGACAGAGCTGATCATAAGCAACATTCTGAGGATAGGGAAAGTTAATGTGATAGGAGAT 1876
Query 1852 GTTATACTGTTTCTAGGAAAGCTTTGTGTGAGTCTCTTCAGTGCTCTCTTTGGCTTCTTG 1911
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1877 GTTATATTGTTTCTAGGAAAGCTTTGTGTGAGTCTCTTCAGTGCTCTCTTTGGCTTCTTG 1936
Query 1912 ATGTTGGATTCGCATAGATATCGGGATTCTCACAACAAAGTCTCATCCCCGCTATTACCT 1971
|||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1937 ATGTTGGATTCGCACCGATATCGTGCTTCTCACAACAAAGTCTCATCCCCGCTATTACCT 1996
Query 1972 GTTTTGGCATGTTGGGCATTGGGGTATATTGTTGCAACACTTTTCTTTGCGGTGGTTGAG 2031
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1997 GTTTTGGCATGTTGGGCATTGGGGTATATTGTGGCAACACTTTTCTTTGCGGTGGTTGAG 2056
Query 2032 ATGTCGATAGACACAATCATTCTCTCCTTCTGTCAAGACTCAGAGGAGAATCAAGGGAAT 2091
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2057 ATGTCGATAGACACCATCATTCTCTCCTTCTGTCAAGACTCAGAGGAGAATCAAGGGAAT 2116
Query 2092 GCTCAGCACGCGCCACCTCTTCTGCTTGAAACTTTAGATAGCAATCAGGAGGAAGAGGTT 2151
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2117 GCTCAGCACGCACCACCTCTTCTGCTTGAAACTTTAGATAGCAATCAGGAGGAAGAGGTT 2176
Query 2152 CAGAGACTTACCCACTGATAGATCCATATACGTACTGTATAAGTTTTGTTTCTTCTTTGG 2211
||||| ||||| |||||||||||||||| | | ||||||||||||||||||||||||
Sbjct 2177 CAGAGTCTTACTCACTGATAGATCCATA--C-T---GTATAAGTTTTGTTTCTTCTTTGG 2230
Query 2212 TTGGCCGGTTTATATGGTTTTTTAAAAATAGAATCTTTTCTCTCTAAAACATTCTAAGCA 2271
||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||
Sbjct 2231 TTGGCCGGTTTATATGGTTTTTTAAAA-TAGAATCTTTTATCTCTACAACATTCTAAGCA 2289
Query 2272 GATTGTAATGTCAGATGGCTTGATCAT-CTTCGATTCTGAAACCAAAAATCATATTTCCG 2330
||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||
Sbjct 2290 TATTGTAATGTCAGATGGCTTGATAATTCTTCGATTCCGAAACCAAAAATCATATTTCCG 2349
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115662055680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5