BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478977
Length=1407
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15390.1 | Symbols: SDE5 | silencing defective 5 | chr3:5196... 1131 0.0
> AT3G15390.1 | Symbols: SDE5 | silencing defective 5 | chr3:5196607-5200337
REVERSE LENGTH=1739
Length=1739
Score = 1131 bits (612), Expect = 0.0
Identities = 692/731 (95%), Gaps = 4/731 (1%)
Strand=Plus/Plus
Query 679 GGTTCAGAGGAAGGGCGTAATGCTAAGAATGGTCTTGAAAAGGAAGTTTTAGAAGCTTTG 738
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 929 GGTTCACAGGAAGGGCGTAATGCTAAGAATGGTCTTGAAAAGGAAGTTTTAGAAGCTTTG 988
Query 739 TTCTCAGGTACGGAAAGATATGTGGGA-GAACCAAAAGTAACTCGACATTTTGGAGAAAG 797
||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 989 TTCTCAGGTGCGGAAAGATATGT-GGACAAACCAAAAGTAACTCGACATTTTGGAGAAAG 1047
Query 798 GAGACCAAGAGTTGCTGGTCGTCCTGTTTTTAAACCTCTGGAGGACCCTTTTCAAGAGAG 857
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1048 GAGACCTGGAGTTGCTGGTCGTCCTGTTTTTAAACCTCTGGAAGACCCTTTTCAAGAGAG 1107
Query 858 AGTAGTTGCTGTaaaaaaaTCGTCCAATACATCTAAAGAAGATGAAGATGAAAATGAGTT 917
|||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1108 AGTAGTTGCTGTGAAACAATCGTCCAATACATCTAAAGAAGATGACGATGAAAATGAATT 1167
Query 918 TAAGGCACATCGTAAAGCAGTACGTGAGCATTTGAATCAGATGAAAGAATATTATGGAGC 977
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1168 TAAGGCACATCGTAAAGCAGTACGCGAGCATTTGAATCAGATGAAAGAATATTATGGAGC 1227
Query 978 TGCTGCAGAAGCATTCTCCAAAGGAGAAACCGAGCGAGCACACAGACTCGTGGAGAAGGG 1037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1228 TGCTGCAGAAGCATTCTCCAAAGGAGAAACCGAGCGAGCACACAGACTCGTGGAGAAGGG 1287
Query 1038 ACACTTTTTTGGACAAAAAGCCCGAGAAGCGGATGACAAATCTATAGCAAAGATGATTGA 1097
||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||
Sbjct 1288 ACACTTTTTTGGACAAAAAGCTCGAGAAGCAGATGACAAATCTGTAGCAAAGATGATTGA 1347
Query 1098 TGTCAAGAAAGACGATGATTCGACTTACGAGGAGGACGAGGTAGTGACAGTGAATGTGAA 1157
||||| |||| |||||||| ||||||||||| ||||||||||||||||| ||| ||||
Sbjct 1348 CGTCAATCAAGAAGATGATTCAACTTACGAGGAAGACGAGGTAGTGACAGTAAATATGAA 1407
Query 1158 TGAACACGAAACAAAGGAAGCTCTTCGTCTTCTCAAGCGCCAACTAAATTACTTCTCTGG 1217
|||||||||| |||| ||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1408 TGAACACGAAGCAAAAGAAGCTCTTCGTCTTCTCAAGCGCCAACTTATTTACTTCTCTGG 1467
Query 1218 CATTTCATCTTTTAAGTACCTCAGAGTCGCA-TTGGGTGACAAAAAGGAAGATTTCAAGA 1276
|||||||||||| ||||||||||||||| || |||||||| || ||||||||||||||||
Sbjct 1468 CATTTCATCTTTCAAGTACCTCAGAGTC-CAATTGGGTGAGAAGAAGGAAGATTTCAAGA 1526
Query 1277 GCAAACGAAAGCATATCGTTAAGCTGCTGGAGGGAGAATCCATTGCTTGGACTGAAGAAG 1336
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 1527 GCAAACGAAAGCATATCGTAAAGCTGCTGGAGGGAGAATCCATTCCTTGGACTGAAGAAG 1586
Query 1337 ATAGCGGCCTCGTGATGATGATTCGTGTTGATAAGATTGACCCCAAGAAATTGAGTTTTG 1396
|| ||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||
Sbjct 1587 ATGGCGGCCTCGTGATAATGATTCGGGTTGATGAGATTGACCCCAAGAAATTGAGTTTTG 1646
Query 1397 CCAAGAAATAA 1407
|||||||||||
Sbjct 1647 CCAAGAAATAA 1657
Score = 1014 bits (549), Expect = 0.0
Identities = 618/652 (95%), Gaps = 2/652 (0%)
Strand=Plus/Plus
Query 1 ATGTCTATGATTGCAAGCTCTTCGAATAGTGATCCTGATTCAAGAAGCTTACAAGTGCTT 60
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 ATGTCAAAGATTGCAAGCTCTTCGAATAGTGATCCTGATTCAAGAAGCTTACAAGTGCTT 244
Query 61 CTCGATGCCTTTGGTTCTCGTTTTTCGCTTGATGACATTGCTGCTGCTTATTGCCAAGCA 120
|||||| | ||||||||||||||||| |||||||||||||| |||||||| ||||||||
Sbjct 245 CTCGATACTTTTGGTTCTCGTTTTTCTCTTGATGACATTGCCGCTGCTTACTGCCAAGCT 304
Query 121 AGTCAGAATGTCGATGTAGCTGGTGAGATTCTCTTTGCAATGACTGAAAAGACGCCTCAA 180
|| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 305 AGCCAGAATGTCGATGTAGCTGGTGAGATTCTCTCTGCAATGGCTGAAAAGACGCCTCAA 364
Query 181 TGTGACCACGTTGAAATGAAGAAC-GAAACCTCAAAACCAAGTCAGGTCTATGTTCCCAA 239
|||||||| |||||||||||| || | |||||||||||||| ||||||||||||||| ||
Sbjct 365 TGTGACCAAGTTGAAATGAAG-ACAGCAACCTCAAAACCAACTCAGGTCTATGTTCCTAA 423
Query 240 GGAAGTTCGACGACAAGAGGATAGCAAAGCCAAAGTATGGAGGCCGAAGAGAAATTCTAT 299
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 424 GGAAGTTCCACGACAAGAGGATAGCAAAGCGAAAGTATGGAGGCCGAAGAGAAATTCTAT 483
Query 300 ATCAGTTGGTACTGTTTCAAGTGTTATCGGTAAGGAGTATGCTAGAACCAGGCCTATATC 359
|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 484 ATCAAATGGTACTGTTTCAAGTGTTATTGGTAAGGAGTATGCTAGAACCAGGCCTATATC 543
Query 360 AAATGCTCCCAGAGAAGCAACTAAGCCAATGAAGATAGACTCAAGGGATATTCCAGAAAC 419
||||||||||| |||||||||||| ||| |||||||| ||||||||||||||||||||||
Sbjct 544 AAATGCTCCCAAAGAAGCAACTAAACCATTGAAGATAAACTCAAGGGATATTCCAGAAAC 603
Query 420 TGAGATATGGAGTGAAGAAATGCCAAAGAGTAACGAGGCAAAGATAAGCAGGGCTCCAAC 479
||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||
Sbjct 604 TGAGATATGGAGTGAAGAAATGCGAAAAAGTAACGAGGGAAAGATAAGCAGGGCTCCAAC 663
Query 480 TGATGTGGAGGAATTTATCGTTAAGATGCTTGGAGAAGGCTTTCAAGCTAGCCAAGATGT 539
|||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| ||
Sbjct 664 TGATGTTGAGGAATTTATTGTTAAGATGCTTGGAGAAGGTTTTCAAGCTAGCCAAGAAGT 723
Query 540 CATTCACCAGGTTCTTGGCGTATGCGGATATGATGTGAAGAAGAGTACGGAGAAACTGCT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 CATTCACCAGGTTCTTGGCGTATGCGGATATGATGTGAAGAAGAGTACGGAGAAACTGCT 783
Query 600 TGACTTGTCTGATACCAAGAAATATGCTGATGTTGGAATTTCCAATGAAGTT 651
|||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 TGACTTTTCTGATACCAAGAAATATGCTGATGTTGGAATTTCCAATGAAGTT 835
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69326952645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5