BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478978
Length=444
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15395.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 427 4e-119
> AT3G15395.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; Has 35333 Blast hits to
34131 proteins in 2444 species: Archae - 798; Bacteria - 22429;
Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0;
Other Eukaryotes - 9610 (source: NCBI BLink). | chr3:5200713-5201418
FORWARD LENGTH=380
Length=380
Score = 427 bits (231), Expect = 4e-119
Identities = 290/317 (91%), Gaps = 9/317 (3%)
Strand=Plus/Plus
Query 104 GAGTAATT-CTGAGAAACAGTATGGGATCGAGAGGAATTATCAACGATAAGTGGTCAATG 162
|||| ||| | |||||| | |||||||||||||| ||||||||||||||||||||||||
Sbjct 69 GAGTTATTGCAGAGAAAAAAAATGGGATCGAGAGGGATTATCAACGATAAGTGGTCAATG 128
Query 163 AGGATTTTATGGGGTTGTGCTATCGGAAGTGCAATTGGTTTATACATGGTTGCTGTAGAA 222
|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 129 AGGATTCTATGGGGTTGTGCTATCGGAAGTGCTATTGGTTTATACATGGTTGCTGTAGAG 188
Query 223 AGACAAACTCAGAACAGGGCTCGTGCTATGGCTGAGAGTTTGAGAGCTGCTGAGTCACAA 282
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 189 AGACAAACTCAGAACAGGGCTCGTGCTATGGCTGAGAGTTTGAGAGCTGCTGAATCACAA 248
Query 283 GGTGATGGTGATAGTGTCTAAATCTATATCTACCTAGTAGTGCTCAGAAGAAGAATCTCA 342
||||||||||||| ||||||| | || ||||| |||||||||||| ||| | |||||
Sbjct 249 GGTGATGGTGATAATGTCTAA-T--AT--CTACCAAGTAGTGCTCAGTTGAATACTCTCA 303
Query 343 GTTGAGtttttttttttg-tgtttgtttttgtTATAATGACTTCTTCTTCCAAGAGATTG 401
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||| | |
Sbjct 304 GTTGAGTTTTTTTTTTTGGTGTTTGTTTTTGTTATAATGACTTCTTCTGCCAAGA--TGG 361
Query 402 TGTTGATGTAGTTTCTT 418
|||||||||||||||||
Sbjct 362 TGTTGATGTAGTTTCTT 378
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21112454580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5