BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478982
Length=1343
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15400.1 | Symbols: ATA20 | anther 20 | chr3:5201644-5203197... 907 0.0
> AT3G15400.1 | Symbols: ATA20 | anther 20 | chr3:5201644-5203197
FORWARD LENGTH=1554
Length=1554
Score = 907 bits (491), Expect = 0.0
Identities = 621/683 (91%), Gaps = 12/683 (2%)
Strand=Plus/Plus
Query 4 CCAGATCATGAGGTACATCCTGAGCACATGGTCAAGCCTGACCATAAACTGCAGTCCATG 63
|||||||||||||| || |||||||||| ||||||||||| ||||| ||| |||||||||
Sbjct 194 CCAGATCATGAGGTCCAACCTGAGCACACGGTCAAGCCTGGCCATACACTCCAGTCCATG 253
Query 64 TTGGGTGCATTAGAACATCCTGAGCACACGGTCAAGCCTAACCATAAACTCCAGTCTATG 123
| |||| || ||||||||| ||||||||||| |||||| ||||| ||||||||| |||
Sbjct 254 TCCGGTGTATCAGAACATCCAGAGCACACGGTTAAGCCTGGCCATACACTCCAGTCCATG 313
Query 124 TTGGGTGAATCAGAACATCCTGAGCACAAGGTCAAGCCTGACCATAAACTCCAGTCCATG 183
| |||| || |||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 314 TCCGGTGCATTAGAACATCCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATG 373
Query 184 TTGGGAGAACATCTTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCCATGTCGGGT 243
||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 374 TTGGGAGAACATCCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGT-TGG- 431
Query 244 GTATCAGAACATCCTGAGCACAAGGTCAAGCCTGACCATAAACTCCAGTCTTTGTTAGGT 303
| |||||||||||||||||||| |||||||||||||||||||||||| |||| ||
Sbjct 432 G----AGAACATCCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGTT-GG- 485
Query 304 GAATCAGAACATCCTGAGCACAAGGTCAAGCCTGACCATAAACTGCAGTCCATGTCTGGT 363
| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 486 G----AGAACATCCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCCATGTCTGGT 541
Query 364 GAATCAAAACATCCTGCGCACAAAATCAAGCCTGATCAGATAATGCAGACCATGGCGAGT 423
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 542 GAATCAAAACATCCTGAGCACAAAGTCAAGCCTGATCAGATAATGCAGACCATGGCGAGT 601
Query 424 GAACTGGAAGAGGAAGATCCAGACCACACAACTAAGCCTATGGGATATGGTGTAGGTAGG 483
|||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||
Sbjct 602 GAACTGGAAGAGGAAGATCCTGACCACACAAGTAAGCCTATGGGGTATGGTGTAGGTAGG 661
Query 484 GGCTACGGAAGTGGTGGGTCTGGTGTTGGCTATGGCGTTGGAATTGGCTCTAGTGGAGGG 543
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 GGCTATGGAAGTGGTGGGTCTGGTGTTGGCTATGGCGTTGGAATTGGCTCTAGTGGAGGC 721
Query 544 AGTGGCTTTGGGGAAGGAATTGGCTCTAGTGGAGGCATTGGCTTTGGAGAAGGTATTGGC 603
||||||||||| ||||| ||||||||||||||||||| |||||||||||||| ||||||
Sbjct 722 AGTGGCTTTGGAGAAGGTATTGGCTCTAGTGGAGGCAACGGCTTTGGAGAAGGAATTGGC 781
Query 604 TCTAGTGGAGGCAGTGGCTTTGGAGAAGGTATTGGCTCTAGTGGAGGCAGTGGCTTTGGA 663
|||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 782 TCTAGTGGAGGCAGCGGCTTTGGAGAAGGAATTGGCTCTAGTGGAGGCAGCGGCTTTGGT 841
Query 664 GAAGGAATTGGGTCTAGTGGTGG 686
||||||||||| ||| |||||||
Sbjct 842 GAAGGAATTGGTTCTGGTGGTGG 864
Score = 556 bits (301), Expect = 1e-157
Identities = 501/588 (85%), Gaps = 52/588 (9%)
Strand=Plus/Plus
Query 795 TCCAGGCGAAGGGATTGGTATCGGAATAGGACAGGGCTCTAGTGGTGGACCCGGTGTAGT 854
|||||| ||||||||||||||||| ||||| | | || |||||||| |||||||
Sbjct 979 TCCAGGGGAAGGGATTGGTATCGGTATAGG--A-----C-AG-GGTGGACCTAGTGTAGT 1029
Query 855 TGTCCCAGGCGCAACAATCCCTCCCATAGTAGTTCCAGGCGCACAGATTCCCGGTTTTAC 914
||||||||| ||| ||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1030 AGTCCCAGGCACAAGAATCCCTCCGATAGTGGTTCCAGGCGCACAGATTCCCGGTTTTGT 1089
Query 915 GATTCCAGGTATCACAGTTCCTGGCTACGGTTCTGGGTGCCAAACAGGTGGTTGCAATCC 974
||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||
Sbjct 1090 GATTCCAGGTATCACAGTTCCTGGCTACGGTACTGGATGCCAAACAGGTGGCTGCAATCC 1149
Query 975 GTACCCACCACACTACTATAACCCACCAAGCTGTCCACATTGTCCACCTTTCACATCAGG 1034
| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 1150 GAACCCACCACACTACTATATCCCACCAAGCTGTCCCCATTGTCCACCTTTCACATCAGG 1209
Query 1035 AGAAGACAAGCACATGTCAGACAAAGGAGCAATGACGGAAGCTCTTGCACCCACTACACC 1094
| ||||||| |||||||||||||||||||| ||||| |||||||||||||||||| ||||
Sbjct 1210 ACAAGACAAACACATGTCAGACAAAGGAGCCATGACCGAAGCTCTTGCACCCACTTCACC 1269
Query 1095 GGAGATGCATGTTTAAG---T----GTCCATGAAACACGAGTCTAATAAATCTCACTCAT 1147
|||||| |||||||||| | ||||||||||||| ||||||||||| ||||||||
Sbjct 1270 GGAGATACATGTTTAAGCTTTAAGAGTCCATGAAACACCAGTCTAATAAA--TCACTCAT 1327
Query 1148 AATGAAATCTATTTTGGTTTGGTAAAAGCTTCACATAAAGTTGAATAAGACAACTTTCTT 1207
|||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||
Sbjct 1328 AATGAAATCTATTTTGGTTT-ATAAAAGCTTCACAGAAAGTTGAATAATACAACTTTCTT 1386
Query 1208 GC-C------CAAG-----T-A--GAAA-G--T-T-A-AATAAGGGA-AAGT--T-ATTT 1242
|| | ||| | | |||| | | | | |||||| || |||| | |
Sbjct 1387 GCTCAAGTAAAAAGATATATAAGGGAAATGCATATAAGAATAAGTGAGAAGTACTCAGAG 1446
Query 1243 A-AGAATAAG--TGATTGAGGATTAGGCAGCTGGTAATTGCATTTCCATGGC--TGTATC 1297
| |||| ||| ||||| || ||||||||||||||||||||||||||||||| ||||||
Sbjct 1447 ACAGAAAAAGATTGATTAAGAATTAGGCAGCTGGTAATTGCATTTCCATGGCTGTGTATC 1506
Query 1298 TGTATGACTGACAAATGAGTTTTAAA-A-ACCGGTCCACAAATCAAGT 1343
|||||||||||||||||||||| ||| | |||||||||||||||||||
Sbjct 1507 TGTATGACTGACAAATGAGTTT-AAATAGACCGGTCCACAAATCAAGT 1553
Score = 388 bits (210), Expect = 6e-107
Identities = 240/255 (94%), Gaps = 0/255 (0%)
Strand=Plus/Plus
Query 546 TGGCTTTGGGGAAGGAATTGGCTCTAGTGGAGGCATTGGCTTTGGAGAAGGTATTGGCTC 605
||||| ||| | |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 688 TGGCTATGGCGTTGGAATTGGCTCTAGTGGAGGCAGTGGCTTTGGAGAAGGTATTGGCTC 747
Query 606 TAGTGGAGGCAGTGGCTTTGGAGAAGGTATTGGCTCTAGTGGAGGCAGTGGCTTTGGAGA 665
||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 748 TAGTGGAGGCAACGGCTTTGGAGAAGGAATTGGCTCTAGTGGAGGCAGCGGCTTTGGAGA 807
Query 666 AGGAATTGGGTCTAGTGGTGGCAGCGGCTTTGGTGAAGGAATTGGGTCTGGTGGTGGTAC 725
||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 808 AGGAATTGGCTCTAGTGGAGGCAGCGGCTTTGGTGAAGGAATTGGTTCTGGTGGTGGTAC 867
Query 726 AGGTATTGGCATTGGAGAAGGAATAGGATCCGGGTCTGGCCAACCCAATTGCGGTCCAGT 785
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||
Sbjct 868 AGGTATTGGCATTGGAGAAGGAATAGGATCCGGGTCTGCCCAACCCAATTGCGGCCCTGT 927
Query 786 CACGGGAGCTCCAGG 800
|||||||||||||||
Sbjct 928 CACGGGAGCTCCAGG 942
Score = 379 bits (205), Expect = 3e-104
Identities = 299/342 (87%), Gaps = 16/342 (5%)
Strand=Plus/Plus
Query 18 ACATCCTGAGCACATGGTCAAGCCTGACCATAAACTGCAGTCCATGTTGGGTGCATTAGA 77
|||||| ||||||| ||| ||||||| ||||| ||| |||||||||| |||||||||||
Sbjct 268 ACATCCAGAGCACACGGTTAAGCCTGGCCATACACTCCAGTCCATGTCCGGTGCATTAGA 327
Query 78 ACATCCTGAGCACACGGTCAAGCCTAACCATAAACTCCAGTCTATGTTGGGTGAATCAGA 137
|||||||||||||| || |||||| |||||||||||||||||||||| || | |||
Sbjct 328 ACATCCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGTT-GG-G----AGA 381
Query 138 ACATCCTGAGCACAAGGTCAAGCCTGACCATAAACTCCAGTCCATGTTGGGAGAACATCT 197
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 382 ACATCCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGTTGGGAGAACATCC 441
Query 198 TGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCCATGTCGGGTGTATCAGAACATCC 257
|||||||||||||||||||||||||||||||||||| |||| ||| | ||||||||
Sbjct 442 TGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGTTGGG---A---GAACATCC 495
Query 258 TGAGCACAAGGTCAAGCCTGACCATAAACTCCAGTCTTTGT-TAGGTGAATCAGAACATC 316
||||||||||| ||||||||||||||||||||||| ||| | ||||||||| ||||||
Sbjct 496 TGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCCATGTCT-GGTGAATCAAAACATC 554
Query 317 CTGAGCACAAGGTCAAGCCTGACCATA-AACTGCAGTCCATG 357
|||||||||| ||||||||||| || | || ||||| |||||
Sbjct 555 CTGAGCACAAAGTCAAGCCTGATCAGATAA-TGCAGACCATG 595
Score = 311 bits (168), Expect = 1e-83
Identities = 232/261 (89%), Gaps = 12/261 (5%)
Strand=Plus/Plus
Query 18 ACATCCTGAGCACATGGTCAAGCCTGACCATAAACTGCAGTCCATGTTGGGTGCATTAGA 77
|||||||||||||| || ||||||||||||||||| ||||| ||||| || | |||
Sbjct 328 ACATCCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGTT-GG-G----AGA 381
Query 78 ACATCCTGAGCACACGGTCAAGCCTAACCATAAACTCCAGTCTATGTTGGGTGAATCAGA 137
|||||||||||||| || |||||| |||||||||||||||||||||| || | |||
Sbjct 382 ACATCCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGTT-GG-G----AGA 435
Query 138 ACATCCTGAGCACAAGGTCAAGCCTGACCATAAACTCCAGTCCATGTTGGGAGAACATCT 197
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 436 ACATCCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGTTGGGAGAACATCC 495
Query 198 TGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCCATGTCGGGTGTATCAGAACATCC 257
|||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||
Sbjct 496 TGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCCATGTCTGGTGAATCAAAACATCC 555
Query 258 TGAGCACAAGGTCAAGCCTGA 278
||||||||| |||||||||||
Sbjct 556 TGAGCACAAAGTCAAGCCTGA 576
Score = 283 bits (153), Expect = 3e-75
Identities = 286/345 (83%), Gaps = 30/345 (9%)
Strand=Plus/Plus
Query 82 CCTGAGCACACGGTCAAGCCTAACCATAAACTCCAGTCTATGTTGGGTGAATCAGAACAT 141
||||||||||||||||||||| ||||| ||||||||| |||| |||| ||||||||||
Sbjct 212 CCTGAGCACACGGTCAAGCCTGGCCATACACTCCAGTCCATGTCCGGTGTATCAGAACAT 271
Query 142 CCTGAGCACAAGGTCAAGCCTGACCATAAACTCCAGTCCATGT-TGG-G----AGAACAT 195
|| ||||||| ||| ||||||| ||||| |||||||||||||| || | |||||||
Sbjct 272 CCAGAGCACACGGTTAAGCCTGGCCATACACTCCAGTCCATGTCCGGTGCATTAGAACAT 331
Query 196 CTTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCCATGTCGGGTGTATCAGAACAT 255
| |||||||||||||||||||||||||||||||||||| |||| ||| | ||||||
Sbjct 332 CCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGTTGGG---A---GAACAT 385
Query 256 CCTGAGCACAAGGTCAAGCCTGACCATAAACTCCAGTCTTTGTTAGGTGAATCAGAACAT 315
||||||||||||| |||||||||||||||||||||||| |||| || || ||||||
Sbjct 386 CCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGTT-GG-GA----GAACAT 439
Query 316 CCTGAGCACAAGGTCAAGCCTGACCATAAACTGCAGTCCATGTCTGGTGAATCAAAACAT 375
||||||||||||| ||||||||||||||||| ||||| |||| ||| || || |||
Sbjct 440 CCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGT-TGG-GAG--AA--CAT 493
Query 376 CCTGCGCACAA--AATCAAGCCTGATCAGATAA-TGCAGACCATG 417
|||| |||||| || |||||||| || | || | ||| |||||
Sbjct 494 CCTGAGCACAAGGAA--AAGCCTGACCATA-AACTCCAGTCCATG 535
Score = 191 bits (103), Expect = 2e-47
Identities = 127/139 (91%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 581 TTGGCTTTGGAGAAGGTATTGGCTCTAGTGGAGGCAGTGGCTTTGGAGAAGGTATTGGCT 640
|||||| ||| | || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 687 TTGGCTATGGCGTTGGAATTGGCTCTAGTGGAGGCAGTGGCTTTGGAGAAGGTATTGGCT 746
Query 641 CTAGTGGAGGCAGTGGCTTTGGAGAAGGAATTGGGTCTAGTGGTGGCAGCGGCTTTGGTG 700
|||||||||||| |||||||||||||||||||| |||||||| |||||||||||||| |
Sbjct 747 CTAGTGGAGGCAACGGCTTTGGAGAAGGAATTGGCTCTAGTGGAGGCAGCGGCTTTGGAG 806
Query 701 AAGGAATTGGGTCTGGTGG 719
|||||||||| ||| ||||
Sbjct 807 AAGGAATTGGCTCTAGTGG 825
Score = 182 bits (98), Expect = 1e-44
Identities = 192/234 (82%), Gaps = 20/234 (9%)
Strand=Plus/Plus
Query 18 ACATCCTGAGCACATGGTCAAGCCTGACCATAAACTGCAGTCCATGTTGGGTGCATTAGA 77
|||||||||||||| || ||||||||||||||||| ||||| ||||| || | |||
Sbjct 382 ACATCCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGTT-GG-G----AGA 435
Query 78 ACATCCTGAGCACACGGTCAAGCCTAACCATAAACTCCAGTCTATGTTGGGTGAATCAGA 137
|||||||||||||| || |||||| |||||||||||||||||||||| || | |||
Sbjct 436 ACATCCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGTT-GG-G----AGA 489
Query 138 ACATCCTGAGCACAAGGTCAAGCCTGACCATAAACTCCAGTCCATGT-TGG-GAG--AA- 192
||||||||||||||||| |||||||||||||||||||||||||||| ||| || ||
Sbjct 490 ACATCCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCCATGTCTGGTGAATCAAA 549
Query 193 -CATCTTGAGCACAAGGAAAAGCCTGACCATA-AACTCCAGTCCATGTCGGGTG 244
|||| ||||||||| | |||||||| || | || | ||| ||||| || |||
Sbjct 550 ACATCCTGAGCACAAAGTCAAGCCTGATCAGATAA-TGCAGACCATGGCGAGTG 602
Score = 122 bits (66), Expect = 6e-27
Identities = 90/102 (88%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 618 TGGCTTTGGAGAAGGTATTGGCTCTAGTGGAGGCAGTGGCTTTGGAGAAGGAATTGGGTC 677
||||| ||| | || ||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 688 TGGCTATGGCGTTGGAATTGGCTCTAGTGGAGGCAGTGGCTTTGGAGAAGGTATTGGCTC 747
Query 678 TAGTGGTGGCAGCGGCTTTGGTGAAGGAATTGGGTCTGGTGG 719
|||||| |||| ||||||||| ||||||||||| ||| ||||
Sbjct 748 TAGTGGAGGCAACGGCTTTGGAGAAGGAATTGGCTCTAGTGG 789
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66114117765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5