BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478983
Length=2093
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15410.2 | Symbols: | Leucine-rich repeat (LRR) family prot... 3186 0.0
> AT3G15410.2 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr3:5203292-5207559 FORWARD LENGTH=2141
Length=2141
Score = 3186 bits (1725), Expect = 0.0
Identities = 2008/2135 (94%), Gaps = 57/2135 (3%)
Strand=Plus/Plus
Query 1 AAACTTTCCGGAAGGAGAGTGGTGGACCAACTGGTGGTaacgacggagaagaacgaacga 60
|||||||||| |||||||||||||| | ||| || |||||||||||||||||||||||
Sbjct 1 AAACTTTCCGAAAGGAGAGTGGTGG--C-ACT-GTAATAACGACGGAGAAGAACGAACGA 56
Query 61 acgaacgaacga-acgcgagagagagagagagT-TTTAATGGATCGGATTCTGAAAGCGG 118
||| || | || | ||||||||||||| | | |||||||||||||||||||||||| |
Sbjct 57 ACG--CG-A-GAGA-TCGAGAGAGAGAGA-AATATTTAATGGATCGGATTCTGAAAGCAG 110
Query 119 CTCGAACGTCTGGTTCGCTGAATCTTTCCAATCG--CTCTC--------T-C-A--A--- 161
||||||| |||||||||||||||||||||||||| ||||| | | | |
Sbjct 111 CTCGAACATCTGGTTCGCTGAATCTTTCCAATCGTTCTCTCAATTTTGATCCTATTACCT 170
Query 162 -GGATGTACCTATTGAGGTATATCAATGTTTGGAAACGACCGGAGAAGGAGAAAACTGGT 220
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 GGGATGTACCTACTGAGGTATATCAATGTTTGGAAACGACCGGAGAAGGAGAAAACTGGT 230
Query 221 GGGAGGCTGTTGATTTGCAGAAGTTGATATTGGCTCATAATGACATTGAGGTTTTAAGGG 280
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 231 GGGAGGCTGTTGATTTGCAGAAGTTGATTTTGGCTCATAATGACATTGAGGTTTTAAGAG 290
Query 281 AAGATCTGAAGAACCTTGCCTGTTTGGTTGTGTTAAATGTCAGTCACAATAATCTCTCTC 340
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 291 AAGATCTGAAGAACCTTGCCTGTTTGGTTGTGCTAAATGTCAGTCACAATAAACTCTCTC 350
Query 341 AACTTCCAGCAGCTATTGGGGAGCTTACTGCGATGAAGTCTTTGGATGTGTCTTTTAACT 400
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 351 AACTTCCAGCAGCTATTGGGGAGCTTACTGCGATGAAGTCTTTGGATGTGTCCTTTAACT 410
Query 401 CTATATCAGAACTTCCTGAACAAATTGGTTCAGCAATTTCTCTTGTCAAGCTTGACTGTT 460
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 411 CAATATCAGAACTTCCTGAGCAAATTGGTTCAGCAATTTCTCTTGTCAAGCTTGACTGTT 470
Query 461 CAAGCAATCGGCTTAAAGAATTGCCAGAATCTATTGGGAGATGTTTAGACTTATCCGATT 520
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 471 CAAGCAATCGGCTTAAAGAATTGCCAGATTCTATTGGGAGATGTTTAGACTTATCCGATT 530
Query 521 TGAAGGCCTCAAATAATCAAATCTCCAGTTTGCCAGAAGACATGGTGAACTGTTCGAAAT 580
| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 531 TAAAGGCCACAAATAATCAAATTTCCAGTTTGCCAGAAGACATGGTGAACTGTTCGAAAT 590
Query 581 TATCTAAACTGGATGTGGAGGGAAACAAGCTCACAGCTCTCTCTGAGAACCACATAGCAT 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 TATCTAAACTGGATGTGGAGGGAAACAAGCTCACAGCTCTCTCTGAGAACCACATAGCAT 650
Query 641 CATGGACCATGCTTACAGAACTTAATGCATCG-AAGAATATGCTGAGTGGTCTGCCACAA 699
|||||||||||||| ||||||||||||||| | |||||||||||| ||| ||||||||||
Sbjct 651 CATGGACCATGCTTGCAGAACTTAATGCAT-GTAAGAATATGCTGGGTGTTCTGCCACAA 709
Query 700 AATATCGGAAGCCTTTCGCGTCTTATTAGGCTTGACCTTCATCAGAACAAAATCTT-GTC 758
|| |||||||| |||||||||||||| ||||||||||||||||||||||||| || |||
Sbjct 710 AACATCGGAAGTCTTTCGCGTCTTATCCGGCTTGACCTTCATCAGAACAAAAT-TTCGTC 768
Query 759 TGTTCCACCATCAATAGGCGATTGCTCCTCTCTTGTGGAGTTCTATTTGGGAATTAACTC 818
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 769 TGTTCCACCATCAATAGGCGGTTGCTCCTCTCTTGTGGAGTTCTATTTGGGAATAAACTC 828
Query 819 ACTATCAACATTACCAGCCGAGATTGGAGATCTATCACGTCTAGGAACATTGGATCTTCG 878
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 829 ACTATCAACATTACCAGCAGAGATTGGAGATCTATCACGTCTAGGAACATTGGATCTTCG 888
Query 879 TTCTAATCAACTCAAGGAATATCCAGTTGGGGCATGTAAATTGAAGCTCTCGTACCTAGA 938
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TTCTAATCAGCTCAAGGAATATCCAGTTGGGGCATGTAAATTGAAGCTCTCGTACCTAGA 948
Query 939 TCTTTCAAATAATTCCTTGACAGGATTGCATCCTGAGCTCGGAAACATGACTACTCTGAG 998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 TCTTTCAAATAATTCCTTGACAGGATTGCATCCTGAGCTCGGAAACATGACTACTCTGAG 1008
Query 999 AAAGCTTGTGCTTGTTGGCAATCCTTTGAGAACTCTTAGAAGCTCATTAGTAAATGGTCC 1058
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1009 AAAGCTTGTGCTTGTTGGCAATCCTTTGAGAACCCTTAGAAGCTCATTAGTAAATGGTCC 1068
Query 1059 TACAGCTGCTCTATTGAAGTATCTTAGGAGCCGCCTTTCTAATAGTGAAGAAACAAGTGC 1118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 TACAGCTGCTCTATTGAAGTATCTTAGGAGCCGCCTTTCTAATAGTGAAGAAACAAGTGC 1128
Query 1119 AAGCACTCCAACAAAGGAAAATGTGATTGCTTCAGCAGCTCGTATGTCCATTTCTTCAAA 1178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 AAGCACTCCAACAAAGGAAAATGTGATTGCTTCAGCAGCTCGTATGTCCATTTCTTCAAA 1188
Query 1179 GGAACTTTCTCTGGAAGGTCTCAACTTGAGTGCTGTCCCTTCAGAAGTTTGGGAATCTGG 1238
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1189 GGAACTTTCTCTGGAAGGTCTCAACTTGAGTGATGTCCCTTCAGAAGTTTGGGAATCTGG 1248
Query 1239 TGAGATCTCGAAAGTTAATCTTTCTAAGAACTCTATCGAGGAATTGCCTGCTCAACTTTC 1298
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 TGAGATCACGAAAGTTAATCTTTCTAAGAACTCTATCGAGGAATTGCCTGCTCAACTTTC 1308
Query 1299 TACATCTGTTTCCCTTCAGACTTTAATTTTGTCAAGGAACAAGATTAAAGATTGGCCTGG 1358
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 1309 TACATCTGTTTCCCTTCAGACATTAATTTTGTCAAGGAACAAAATTAAAGATTGGCCAGG 1368
Query 1359 TGCAATCTTGAAGTCACTTCCCAATCTTGTGTGCTTGAAGTTGGATAATAATCCCCTGAC 1418
|||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1369 TGCAATCTTGAAATCACTTCCCAATCTTATGTGCTTGAAGCTGGATAATAATCCCCTGAA 1428
Query 1419 GCAGATTCCACTGGATGGGTTTCAAGCAGTCTCTGGGCTTCGGATTCTAGACCTAAGTGG 1478
|||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||
Sbjct 1429 TCAGATTCCACTGGATGGGTTCCAAGTAGTCTCTGGGCTTCAGATTCTAGACCTAAGTGT 1488
Query 1479 TAATGCAGTTTCCTTCAGAGAGCATCCTAAGTTTTGCCACTTGCCACAACTGCAAGAGCT 1538
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1489 TAATGCAGTTTCCTTCAGAGAGCATCCTAAGTTTTGCCACTTGCCACAACTGCGAGAGCT 1548
Query 1539 TTATTTGAGTCGAATCCAGCTATCTGAAGTCCCTGAAGATATCCTCAACTTATCTAACCT 1598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1549 TTATTTGAGTCGAATCCAGCTATCTGAAGTCCCTGAAGATATCCTCAACTTATCTAACCT 1608
Query 1599 GATTATCCTTGACTTGAACCAGAATTCACTTCAATCGATTCCGAAGAGTATCAAGAACAT 1658
|||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1609 GATTATTCTTGACTTGAACCAGAATTCACTTCAATCGATTCCCAAGGGTATCAAGAACAT 1668
Query 1659 GACTTCACTCAAACATCTGGACATATCCAACAACAACATTTCGAGTCTTCCTCCAGAACT 1718
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1669 GACTTCACTCAAACATCTAGACATATCCAACAACAACATTTCAAGTCTTCCTCCAGAACT 1728
Query 1719 GGGTTTGCTTGAGCCTACACTTGAGGTTCTACGACTTGACGGGAACCCATTAAGAAGCAT 1778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1729 GGGTTTGCTTGAGCCTACACTTGAGGTTCTACGACTTGACGGGAACCCATTAAGAAGTAT 1788
Query 1779 CAGGAGGCCAATTCTAGAAAGAGGAACGAAAGCTGTGTTGAACTACCTGAAAGACAGACT 1838
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1789 CAGGAGGCCAATTCTAGAAAGAGGAACAAAAGCTGTGTTGAACTACCTGAAAGACAGACT 1848
Query 1839 TCCAGATCAGTAGCTTTTACAACATTAACTTCAAGACCTATGTTGTTGTTTGTAACATTT 1898
|||||||||||||||| |||||||||||| |||| |||||||||||||||||||| ||||
Sbjct 1849 TCCAGATCAGTAGCTTCTACAACATTAACATCAACACCTATGTTGTTGTTTGTAAGATTT 1908
Query 1899 TTGTGT-CAACGGATTGATTTTTATTGATGAGAAATGC-TGGTGTCC-TTGT-T--G-TG 1951
|||| || | |||||||||| ||||||||||||||| || ||||| |||| | | |
Sbjct 1909 GTGTGAACACCAGATTGATTTT-ATTGATGAGAAATGCGTG-TGTCCCTTGTCTAAGATA 1966
Query 1952 TT---ACTTTTGTTGGTGTGTAATCCAGTACGTCTTGTTGTGTGATATGTACTACAA--- 2005
|| |||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1967 TTTTCACTTTTGTTGGTGTGTAATCCAGTACGTCTGGTTCTGTGATATGTACTACAAGTC 2026
Query 2006 -A----CTCCAAAGGCTTCAACAGGAGAATTGttttttta-caaattgttttctt-tttt 2058
| |||||| ||| |||||||||||||| ||||| || ||||||| |||||| ||||
Sbjct 2027 TATAAACTCCAATGGCCTCAACAGGAGAATT-TTTTTGTAACAAATTGGTTTCTTCTTTT 2085
Query 2059 tgtttctccatttttCATTGTCGAATGCTAACTTA 2093
||||||| ||||||||||||||||||||||| |||
Sbjct 2086 TGTTTCTGCATTTTTCATTGTCGAATGCTAATTTA 2120
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103764526515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5