BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478984
Length=398
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15420.1 | Symbols: | Transcription factor TFIIIC, tau55-re... 558 1e-158
AT1G80745.1 | Symbols: | Transcription factor TFIIIC, tau55-re... 409 1e-113
> AT3G15420.1 | Symbols: | Transcription factor TFIIIC, tau55-related
protein | chr3:5207577-5208359 REVERSE LENGTH=521
Length=521
Score = 558 bits (302), Expect = 1e-158
Identities = 372/403 (92%), Gaps = 15/403 (4%)
Strand=Plus/Plus
Query 1 GGTTCTCGTATTTGCTCGAAAGATTCAAGGGAAAAACTAAAGAAAGAGAAAGAGAGATGG 60
|||| |||||||| |||||||||||||| || | ||||| ||||| ||| ||||||
Sbjct 21 GGTTTTCGTATTTTCTCGAAAGATTCAACGG----A--AAAGATAGAGATAGATAGATGG 74
Query 61 AGGAGGAATATGTTATGATTGATCTTGATGAAGTTTCAAGGCACATTGAGATTCCATCAG 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 AGGAGGAATTTGTTATGATTGATCTTGATGAAGTTTCAAGGCACATTGAGATTCCATCAG 134
Query 121 ATGCTCCTTATACTTTATCAGGTTTGGATACATTGAATCCGGTGTTGACCATTGATGGCA 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 135 ATGCTCCTTATACTTTATCAGGTTTGGATACTTTGAATCCGGTGTTGACCATTGATGGCA 194
Query 181 GAATCAAGCTGGTTGGAGAATATATTGAAACAATTGGTACATGCCTTGCTTTCTCTGAAA 240
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 195 AAATCAAGCTGGTTGGAGAATATATTGAAACGATTGGTACATGCCTTGCTTTCTCTGAAA 254
Query 241 AGGAAGAAGTTTCAGCAAGTGAAAAC-A-A-G--A-A---GAAGATAGTTGAACCTGTTG 291
|||||||||||||||||||||||||| | | | | | ||||||| ||||||||||||
Sbjct 255 AGGAAGAAGTTTCAGCAAGTGAAAACCAGATGCCACATAAGAAGATAATTGAACCTGTTG 314
Query 292 CAAAACTCCACAAGATTCTTAAGTTTAGATTAGCAGCATTAGAAAATGATGATGGAGAAA 351
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 315 CAAAACTCCACAAGATTCTTAAGTTTAGATTAGCAGCATTAGACAATGATGATGGAGAAA 374
Query 352 TAAAAACAAACACTTTGTAAAAGTTTTTCCCTTGTTCAAGTCA 394
||||||||||| ||||||| ||||||||||||||| ||||||
Sbjct 375 CAAAAACAAACAATTTGTAATAGTTTTTCCCTTGTTTAAGTCA 417
> AT1G80745.1 | Symbols: | Transcription factor TFIIIC, tau55-related
protein | chr1:30347426-30348436 FORWARD LENGTH=566
Length=566
Score = 409 bits (221), Expect = 1e-113
Identities = 341/396 (86%), Gaps = 20/396 (5%)
Strand=Plus/Plus
Query 1 GGTTCTCGTATTTGCTCGAAAGATTCAAGGGAAAAACTAAAGAAAGAGAAAGAGAGATGG 60
|||| ||| |||||||||||||||| | ||| ||| ||| ||||||||||||||
Sbjct 97 GGTT-TCGAATTTGCTCGAAAGATT-----G--AAAGGAAA-AAA-AGAAAGAGAGATGG 146
Query 61 AGGAGGAATATGTTATGATTGATCTTGATGAAGTTTCAAGGCACATTGAGATTCCATCAG 120
|||| ||| |||||||||||||||||||||| ||||||||||||||||| |||||| |||
Sbjct 147 AGGATGAACATGTTATGATTGATCTTGATGACGTTTCAAGGCACATTGACATTCCAGCAG 206
Query 121 ATGCTCCTTATACTTTATCAGGTTTGGATACATTGAATCCGGTGTTGACCATTGATGGCA 180
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 207 ATGCTCCTTATACTTTATCAGGTTTGGATACTTTGAATCCGGTGTTGACCATAGATGGCA 266
Query 181 GAATCAAGCTGGTTGGAGAATATATTGAAACAATTGGTACATGCCTTGCTTTCTCTGA-A 239
||| |||||||| ||||||||||| | ||| |||||||||||||||||||||||||| |
Sbjct 267 AAATGAAGCTGGTAGGAGAATATATAGCAACGATTGGTACATGCCTTGCTTTCTCTGACA 326
Query 240 AAGGAAGAAGTTTC-AGCAAGTGAAAACAAGAAGAAGATAGTTGAACCTGTTGCAAAACT 298
|||| || | | || | | | || |||||||| ||||||||||||||| |||||
Sbjct 327 AAGGT-GA--TAACCAG-ACGCCA---CA-GAAGAAGACAGTTGAACCTGTTGCCAAACT 378
Query 299 CCACAAGATTCTTAAGTTTAGATTAGCAGCATTAGAAAATGATGATGGAGAAATAAAAAC 358
|||||||||||| |||||||| |||||| ||||||| || || ||||||| || ||||||
Sbjct 379 CCACAAGATTCTCAAGTTTAGGTTAGCACCATTAGACAACGAAGATGGAGTAACAAAAAC 438
Query 359 AAACACTTTGTAAAAGTTTTTCCCTTGTTCAAGTCA 394
|| || |||||||||||||||| |||||||||||||
Sbjct 439 AACCAATTTGTAAAAGTTTTTCTCTTGTTCAAGTCA 474
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18800138126
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5