BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478996
Length=1248
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15500.1 | Symbols: ATNAC3, ANAC055, NAC055, NAC3 | NAC doma... 1906 0.0
AT1G52890.1 | Symbols: ANAC019, NAC019 | NAC domain containing ... 601 6e-171
AT5G08790.1 | Symbols: ATAF2, anac081 | NAC (No Apical Meristem... 87.9 2e-16
> AT3G15500.1 | Symbols: ATNAC3, ANAC055, NAC055, NAC3 | NAC domain
containing protein 3 | chr3:5234617-5236088 FORWARD LENGTH=1274
Length=1274
Score = 1906 bits (1032), Expect = 0.0
Identities = 1179/1249 (94%), Gaps = 13/1249 (1%)
Strand=Plus/Plus
Query 1 AAATCTTTAATCTCAAAATACAAAAAATAAAAGAATTTTAAAGAAGATAGTGTTGTGATT 60
||||||||||||||| ||||| ||||| | || || | |||||||||||| ||||||||
Sbjct 2 AAATCTTTAATCTCAGAATAC-AAAAA-AGAA-AA--TCAAAGAAGATAGTTTTGTGATT 56
Query 61 GTTTTCTATAAAAAGTGCAGATATTTTCTTTGTCCTAGACAAAGAGGTGATAAGAAAAAT 120
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 57 GTTTTCTATAAAAAGTGCAGATATTTTCTTTGTCCTAGAGAAAGAGGTGATAGGAAAAAT 116
Query 121 GGGTCTCCAAGAGCTTGACCCCTTAGCCCAATTGAGCTTACCACCGGGTTTTCGATTTTA 180
||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||
Sbjct 117 GGGTCTCCAAGAGCTTGACCCGTTAGCCCAATTGAGCTTACCGCCGGGTTTTCGGTTTTA 176
Query 181 CCCGACGGACGAAGAGCTGATGGTTGAATATCTCTGTAGAAAAGCCGCCGGTCATGACTT 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 177 TCCGACTGACGAAGAGCTGATGGTTGAATATCTCTGTAGAAAAGCCGCCGGTCACGACTT 236
Query 241 CTCTCTCCAGCTCATAGCTGAAATCGATCTCTACAAGTTTGATCCATGGGTTTTACCAAG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 CTCTCTCCAGCTCATAGCTGAAATCGATCTCTACAAGTTTGATCCATGGGTTTTACCAAG 296
Query 301 TAAAGCGTTATTCGGTGAAAAAGAATGGTATTTTTTCAGCCCAAGGGATAGGAAGTATCC 360
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 297 TAAGGCGTTATTCGGTGAAAAAGAATGGTATTTTTTCAGCCCGAGGGATAGGAAGTATCC 356
Query 361 GAACGGGTCGAGACCTAATCGGGTTGCCGGATCGGGTTATTGGAAAGCCACCGGTACGGA 420
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 357 AAACGGGTCAAGACCTAATCGGGTTGCCGGGTCGGGTTATTGGAAAGCCACCGGTACGGA 416
Query 421 TAAAGTTATCTCGACGGAGGGAAGAAGAGTTGGTATCAAGAAAGCATTAGTGTTTTACAT 480
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 417 TAAAGTTATCTCGACGGAGGGAAGAAGAGTTGGTATCAAGAAAGCTTTGGTGTTTTACAT 476
Query 481 TGGAAAAGCACCGAAAGGAACCAAAACCAATTGGATTATGCATGAGTACCGTCTCATCGA 540
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TGGAAAAGCTCCAAAAGGAACCAAAACCAATTGGATTATGCATGAGTACCGTCTCATCGA 536
Query 541 ACCCTCTCGTAGAAATGGAAGCACCAAGCTTGATGATTGGGTTTTATGTCGAATATACAA 600
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 ACCCTCTCGTCGAAATGGAAGCACCAAGCTTGATGATTGGGTTTTATGTCGAATATACAA 596
Query 601 AAAGCAATCAAGCGCACAAAAACAGGCTTACAATAATCTAATGACGAGTGGTCGTGAATA 660
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 597 AAAGCAAACAAGCGCACAAAAACAAGCTTACAATAATCTAATGACGAGTGGTCGTGAATA 656
Query 661 CAGCAACAATGGTTCGTCGACATCTTCTTCCTCTCATCAATACGACGACGTGCTCGAGTC 720
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 657 CAGCAACAATGGTTCGTCGACATCTTCTTCGTCTCATCAATACGACGACGTTCTCGAGTC 716
Query 721 TTTGCATGAAATAGACAACAGAAGTTTGGGATTCGCCGCCGGTTCATCAAACTCGCTGCC 780
|||||||| || ||||||||||||||||| || |||||||||||||||||| |||||||
Sbjct 717 GTTGCATGAGATTGACAACAGAAGTTTGGGGTTTGCCGCCGGTTCATCAAACGCGCTGCC 776
Query 781 TCGTAGTCATAGACCGGTTTTAACCAATCAGAAAACCGGGTTTCACGGTTTAGCTAGGGA 840
|| ||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||
Sbjct 777 TCATAGTCATAGACCGGTTTTAACCAATCATAAAACCGGGTTTCAGGGTTTAGCCAGGGA 836
Query 841 GCCAAGTTTTGATTGGGCGAATTTGGTTGGACAGAACTCGGTCCCGGAACTCGGACTGAG 900
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 837 GCCAAGTTTTGATTGGGCGAATTTGATTGGACAGAACTCGGTCCCGGAACTCGGACTGAG 896
Query 901 TCAAAACGTTCCGAGTCTCCGTTACGGTGACGGTGGAACGCAGCAGCAGGCAGAGGGGAT 960
||| |||||||||||| | |||||||||||||||||||||||||| || | ||||||||
Sbjct 897 TCATAACGTTCCGAGTATTCGTTACGGTGACGGTGGAACGCAGCAACAAACTGAGGGGAT 956
Query 961 TCCTCGGTTTAATTATAACTCGGACGTGTTGGCTCATCATGGTTTTAGTGTTGATCCGGT 1020
||||||||||||| ||||||||||||| | |||| |||| |||||||||||||| |||||
Sbjct 957 TCCTCGGTTTAATAATAACTCGGACGTCTCGGCTAATCAGGGTTTTAGTGTTGACCCGGT 1016
Query 1021 TAACGGATTTGGGTACTCGGGTCAACAATCTAGTGGTTTCGGGTTTATTTGATTGTGTAA 1080
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1017 TAACGGATTTGGGTACTCGGGTCAACAATCTAGTGGGTTCGGGTTTATTTGATTGTGTAA 1076
Query 1081 TGGTGACGTAATAAGCAAAACATAATTTTATTTTT-GTCCGAGTCAGATTAATTAATTAA 1139
|||| |||||||||| |||||||| |||||||||| ||||| ||||||||| ||||||||
Sbjct 1077 TGGTAACGTAATAAGAAAAACATATTTTTATTTTTTGTCCGTGTCAGATTAGTTAATTAA 1136
Query 1140 TATAGTGTAGAATTCGAACTCTAGGGTTAGATTTAGGTTCTACGACTTGTATTAATTGTA 1199
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1137 TATAGCGTAGAATTCGAACTCTAGGGTTAGATTTAGGTTCTACGACTTGTATT----GTA 1192
Query 1200 GTATATTCGTCGTCATTTGTCCTGACATTTACATTTTTGTAAACTTTTA 1248
||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 -TAT-T-CGTCGTCATTTGTCCTGACATTTACATTTTTGTAAACTTTTA 1238
> AT1G52890.1 | Symbols: ANAC019, NAC019 | NAC domain containing
protein 19 | chr1:19697004-19698482 REVERSE LENGTH=1280
Length=1280
Score = 601 bits (325), Expect = 6e-171
Identities = 486/564 (86%), Gaps = 9/564 (2%)
Strand=Plus/Plus
Query 115 AAAA-ATGGGTCTCCAAG-AGCTTGACCCCTTAGCCCAATTGAGCTTACCACCGGGTTTT 172
|||| |||||| |||||| | | |||||| ||| | |||||||| ||||||||||||||
Sbjct 34 AAAATATGGGTATCCAAGAAAC-TGACCCGTTAACGCAATTGAGTTTACCACCGGGTTTC 92
Query 173 CGATTTTACCCGACGGACGAAGAGCTGATGGTTGAATATCTCTGTAGAAAAGCCGCCGGT 232
|||||||||||||| || |||||||| |||||| ||||||||||||||||||| || |||
Sbjct 93 CGATTTTACCCGACCGATGAAGAGCTTATGGTTCAATATCTCTGTAGAAAAGCAGCTGGT 152
Query 233 CATGACTTCTCTCTCCAGCTCATAGCTGAAATCGATCTCTACAAGTTTGATCCATGGGTT 292
| || |||||||| |||||||| || ||||| ||||| ||||| || ||||||||||||
Sbjct 153 TACGATTTCTCTCTTCAGCTCATCGCCGAAATAGATCTTTACAAATTCGATCCATGGGTT 212
Query 293 TTACCAAGTAAAGCGTTATTCGGTGAAAAAGAATGGTATTTTTTCAGCCCAAGGGATAGG 352
||||||| |||||| ||||| || |||||||||||||||||||| || || ||||||||
Sbjct 213 TTACCAAATAAAGCATTATTTGGAGAAAAAGAATGGTATTTTTTTAGTCCTAGGGATAGA 272
Query 353 AAGTATCCGAACGGGTCGAGACCTAATCGGGTTGCCGGATCGGGTTATTGGAAAGCCACC 412
|| ||||| |||||||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 273 AAATATCCAAACGGGTCAAGACCTAACCGGGTTGCCGGATCGGGTTATTGGAAAGCTACG 332
Query 413 GGTACGGATAAAGTTATCTCGACGGAGGGA-AGAAGAGTTGGTATCAAGAAAGCATTAGT 471
|||||||||||| | ||||||||||| ||| | |||||||||||| || ||||| || ||
Sbjct 333 GGTACGGATAAAATAATCTCGACGGAAGGACA-AAGAGTTGGTATTAAAAAAGCTTTGGT 391
Query 472 GTTTTACATTGGAAAAGCACCGAAAGGAACCAAAACCAATTGGATTATGCATGAGTACCG 531
||||||||| |||||||| || ||||| || |||||||||||||| ||||||||||| ||
Sbjct 392 GTTTTACATCGGAAAAGCTCCTAAAGGTACTAAAACCAATTGGATCATGCATGAGTATCG 451
Query 532 TCTCATCGAACCCTCTCGTAGAAATGGAAGCACCAAGCTTG-ATGATTGGGTTTTATGTC 590
|||||| ||||| ||||||||||| |||||||| ||| ||| ||||||||||| ||||||
Sbjct 452 TCTCATTGAACCTTCTCGTAGAAACGGAAGCACTAAG-TTGGATGATTGGGTTCTATGTC 510
Query 591 GAATATACAAAAAGCAATCAAGCGCACAAAAACAGGCTTACAATAATCTAAT-GACGAGT 649
|||||||||| ||||||||||| ||||||||||| | |||| ||||| ||| | ||| |
Sbjct 511 GAATATACAAGAAGCAATCAAGTGCACAAAAACAAGTTTACGATAATGGAATCG-CGAAT 569
Query 650 GGTCGTGAATACAGCAACAATGGT 673
| | | |||| ||||||||| |||
Sbjct 570 GCTAGAGAATTCAGCAACAACGGT 593
> AT5G08790.1 | Symbols: ATAF2, anac081 | NAC (No Apical Meristem)
domain transcriptional regulator superfamily protein | chr5:2858849-2860262
REVERSE LENGTH=1234
Length=1234
Score = 87.9 bits (47), Expect = 2e-16
Identities = 172/230 (75%), Gaps = 17/230 (7%)
Strand=Plus/Plus
Query 313 CGGTGAAAAAGAATGGTA-TT-TTTTCAGCCCAAGGGATAGGAAGTATCCGAACGGGTCG 370
||| || ||||| ||||| || || ||| || || ||| |||| || || ||||| |||
Sbjct 292 CGGAGAGAAAGAGTGGTACTTCTTCTCA--CCTAGAGATCGGAAATACCCAAACGGTTCG 349
Query 371 AGACCTAATCGGGTTGCCGGATCGGGTTATTGGAAAGCCACCGGTA-CGGATAAAGTTAT 429
| ||||| |||| || ||| | |||||||||||||| ||||| | | ||| || |
Sbjct 350 CGTCCTAACCGGGCAGCAGGAACCGGTTATTGGAAAGCTACCGG-AGCAGAT-AA---A- 403
Query 430 CTCGACGGAGGGAA--GAAGA-GTT-GGTATCAAGAAAGCATTAGTGTTTTACATTGGAA 485
| ||| | | || ||||| ||| ||||||||||||||| | || || ||| || |
Sbjct 404 C-CGATTG-GTAAACCGAAGACGTTGGGTATCAAGAAAGCACTCGTCTTCTACGCAGGGA 461
Query 486 AAGCACCGAAAGGAACCAAAACCAATTGGATTATGCATGAGTACCGTCTC 535
|||| || ||||| | || ||||||||||| ||||||||||| ||||||
Sbjct 462 AAGCTCCAAAAGGGATTAAGACCAATTGGATAATGCATGAGTATCGTCTC 511
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61345065990
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5