BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478997
Length=1558
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15510.1 | Symbols: ATNAC2, ANAC056, NARS1, NAC2 | NAC domai... 2300 0.0
AT3G04070.1 | Symbols: anac047, NAC047 | NAC domain containing ... 156 7e-37
AT1G52890.1 | Symbols: ANAC019, NAC019 | NAC domain containing ... 122 7e-27
> AT3G15510.1 | Symbols: ATNAC2, ANAC056, NARS1, NAC2 | NAC domain
containing protein 2 | chr3:5243510-5245382 FORWARD LENGTH=1626
Length=1626
Score = 2300 bits (1245), Expect = 0.0
Identities = 1459/1559 (94%), Gaps = 27/1559 (2%)
Strand=Plus/Plus
Query 20 TCACaaaaaaaa-a-aGAGAATAATCTCTGAGAG-AGTA--G-TGATATGA--GCTTCTT 71
|||||||||||| | ||||||| |||| ||||| |||| | |||||||| |||||||
Sbjct 69 TCACAAAAAAAATAGAGAGAATCATCTGAGAGAGTAGTAGTGATGATATGATCGCTTCTT 128
Query 72 CTCCTACAATCTCAGAAACCTCCGATCACGGTTCTAGATAT-TT-TACAACGGA-ACAAT 128
||||||||||||||||||||||||||||||||| ||||||| || ||||||||| |||||
Sbjct 129 CTCCTACAATCTCAGAAACCTCCGATCACGGTTTTAGATATCTTCTACAACGGATACAAT 188
Query 129 GGAGAGCACCGATTCTTCTGGTGGTCCTCCACCGCCACAACCTAACCTTCCTCCAGGCTT 188
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 189 GGAGAGCACCGATTCTTCCGGTGGTCCACCACCGCCACAACCTAACCTTCCTCCAGGCTT 248
Query 189 CCGGTTTCACCCAACCGATGAAGAGCTTGTGGTTCATTACCTCAAACGCAAAGCCGCCTC 248
|||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||| |||||
Sbjct 249 CCGGTTTCACCCTACCGACGAAGAGCTTGTTGTTCACTACCTCAAACGCAAAGCAGCCTC 308
Query 249 TGCTCCTTTACCTGTAGCCATCATCGCCGAAGTCGATCTCTATAAATTCGATCCATGGGA 308
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 309 TGCTCCTTTACCTGTCGCCATCATCGCCGAAGTCGATCTCTATAAATTTGATCCATGGGA 368
Query 309 ACTTCCCGCTAAAGCGTCGTTTGGAGAACAAGAATGGTACTTCTTCAGTCCTCGAGATCG 368
||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 369 ACTTCCCGCTAAAGCATCGTTTGGAGAACAAGAATGGTACTTCTTTAGTCCACGAGATCG 428
Query 369 GAAGTATCCAAACGGAGCAAGACCAAACAGAGCGGCAACTTCAGGATATTGGAAAGCGAC 428
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 429 GAAGTATCCAAACGGAGCAAGACCAAACAGAGCGGCGACTTCAGGTTATTGGAAAGCGAC 488
Query 429 CGGTACAGATAAACCGGTACTTGCTTCCGACGGTAACCAAAAGGTGGGCGTGAAGAAGGC 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 CGGTACAGATAAACCGGTACTTGCTTCCGACGGTAACCAAAAGGTGGGCGTGAAGAAGGC 548
Query 489 ACTGGTCTTCTACAGTGGTAAACCACCAAAAGGCGTGAAAAGTGATTGGATCATGCATGA 548
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 549 ACTAGTCTTCTACAGTGGTAAACCACCAAAAGGCGTTAAAAGTGATTGGATCATGCATGA 608
Query 549 GTATCGTCTCATCGAAAACAAACCAAACAATCGACCTCCTGGTTGTGATTTCGGCAACAA 608
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 609 GTATCGTCTCATCGAAAACAAACCAAACAATCGACCTCCTGGCTGTGATTTCGGCAACAA 668
Query 609 GAAAAACTCACTCAGACTTGATGATTGGGTGTTATGTAGAATCTACAAGAAGAACAACGC 668
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 AAAAAACTCACTCAGACTTGATGATTGGGTGTTATGTAGAATCTACAAGAAGAACAACGC 728
Query 669 AAGTCGACATGTTGATAACGATAAGGATCATGATATGATCGATTACATTTTCAGGAAGAT 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 AAGTCGACATGTTGATAACGATAAGGATCATGATATGATCGATTACATTTTCAGGAAGAT 788
Query 729 TCCTCCGCCGTTATCAATGGCTGCTGCTGCTACAGGACTTCACCATCATCACCATAATGT 788
||||||| | ||||||||||| |||||| |||||||||||||||| ||||| ||||||||
Sbjct 789 TCCTCCGTCTTTATCAATGGCGGCTGCTTCTACAGGACTTCACCAACATCATCATAATGT 848
Query 789 CTCCAGATCAATGAATTTCTTCCCTGGAAAATTCTCCGGTGGTGGTTACGGGATTTTCTC 848
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 849 CTCAAGATCAATGAATTTCTTCCCTGGCAAATTCTCCGGTGGTGGTTACGGGATTTTCTC 908
Query 849 TGACGGAGGTAACACGAGTTTATACGACGGCGGTGGCATGATCAACAACATCGGTACAGA 908
|||||| |||||||||||| |||||||||||||||||||||||||||| || ||||| ||
Sbjct 909 TGACGGTGGTAACACGAGTATATACGACGGCGGTGGCATGATCAACAATATTGGTACTGA 968
Query 909 CTCAGTGGGTCACGACAATAACGCCGACGTCGTTGGTTTGAATCCTGCTTCGTCGTCAGG 968
|||||| | ||||||||||||||| |||||||||||||| |||| |||||||||||||||
Sbjct 969 CTCAGTAGATCACGACAATAACGCTGACGTCGTTGGTTTAAATCATGCTTCGTCGTCAGG 1028
Query 969 TCCGATGATGATGGCGAGTCTGAAACGAGCTCTTCCGGTGCCGTATTGGCCGGTAGCAGA 1028
||| ||||||||||||| | |||||||| |||| ||||||||||||||||| ||||||||
Sbjct 1029 TCCTATGATGATGGCGAATTTGAAACGAACTCTCCCGGTGCCGTATTGGCCTGTAGCAGA 1088
Query 1029 GGAGGAGCAAGATGCATCTCCGAGCAAGCGGTTTCACGGCG--GT-GGAGGAGGAGGAGA 1085
|||||||||||||||||||||||||| ||||||||||| | | ||||||||||||||
Sbjct 1089 TGAGGAGCAAGATGCATCTCCGAGCAAACGGTTTCACGGTGTAGGAGGAGGAGGAGGAGA 1148
Query 1086 TTGTTCGAACATGTCTTCTTCGATGATGGAAGAGCCTCCACCATTGATGCAACAACAAGG 1145
|||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||
Sbjct 1149 TTGTTCGAACATGTCTTCCTCCATGATGGAAGAGACTCCACCATTGATGCAACAACAAGG 1208
Query 1146 TGGTGTCTTAGGAGATGGATTGTTCAGAACGACGTCGTACCAATTACCCGGTTTAAATTG 1205
|||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1209 TGGTGTGTTAGGAGATGGATTATTCAGAACGACATCGTACCAATTACCCGGTTTAAATTG 1268
Query 1206 GTACTCTTCTTAATCAAATGTGTTTCGCTGCCGGTGTGAAGAATTTTCCGGTGAGAGTGA 1265
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1269 GTACTCTTCTTAATCAAATGTGTTTCGCCGCCGGTGTGAAGAATTTTCCGGTGACAGTGA 1328
Query 1266 AGAATTTTT-CCGATTGGTGGGGACATTTGCATT-AT-ATA-AATTTGAGATTTGTGTAT 1321
||| ||||| ||||||||||||| ||||||||| || ||| ||||||||||||||||||
Sbjct 1329 AGATTTTTTTCCGATTGGTGGGGTCATTTGCATGCATTATATAATTTGAGATTTGTGTAT 1388
Query 1322 ATGTTTTGGGTTAATTAATTTGGTCATAGGGGGTTAGAGGAAGAAGATTATTTAGAGAGC 1381
|||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct 1389 ATGTTTTGGGTTAATTAATT-GGTCACAGGGG-TTAGAGGAAGAAGATTATTTAGAGAGC 1446
Query 1382 GGAGAAGAAGTGAGGCAACAACATAAAGAAAACATAGGATTAAAAATGTATTACTGTTTC 1441
|||||||||||||||||||| ||| ||||||||||| ||||||| |||||||||||
Sbjct 1447 GGAGAAGAAGTGAGGCAACAT-ATA--GAAAACATAGGTTTAAAAAA-TATTACTGTTTG 1502
Query 1442 TTAATTTTAAT-AGTTGAATGTATAAATCATATACTTAGATGTTTTTATATTGTTTGTAT 1500
|||| |||||| | || |||||||||||| ||||||||||||||| ||||| ||||||||
Sbjct 1503 TTAAGTTTAATGA-TTAAATGTATAAATCTTATACTTAGATGTTTATATATAGTTTGTAT 1561
Query 1501 AGATGCATATAGTCT-TCTCAATGATATTTTGAGATTGTATTTTCTTGTAAAGGAAATG 1558
||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1562 AGATGCATATAGTTTCTCTCAATGCTATTTTGAGATTGTATTTTCTTGTAAAGGAAATG 1620
> AT3G04070.1 | Symbols: anac047, NAC047 | NAC domain containing
protein 47 | chr3:1061526-1063103 REVERSE LENGTH=1254
Length=1254
Score = 156 bits (84), Expect = 7e-37
Identities = 210/270 (78%), Gaps = 12/270 (4%)
Strand=Plus/Plus
Query 178 CCTCCAGGCTTCCGGTTTCACCCAACCGATGAAGAGCTTGTGGTTCATTACCTCAA--AC 235
|||||||| || || ||||| ||||| |||||||| || | | |||||||| || |
Sbjct 158 CCTCCAGGGTTTCGATTTCATCCAACAGATGAAGAACTCATTCTCCATTACCT-AAGGAA 216
Query 236 GCAAAGCCGCCTCTGCTCCTTTACCTG-TAGCCATCATCGCCGAAGTCGATCTCTATAAA 294
| |||| ||||| | || | || | | | || |||||||| |||||| |||| |||
Sbjct 217 G-AAAGTTTCCTCTTCCCCAGT-CCCGCTTTCGATTATCGCCGATGTCGATATCTACAAA 274
Query 295 TTCGATCCATGGGAACTT-CCCGCTAAAGCGT-CGTTTGGAGA-ACAAGAATGGTACTTC 351
| ||||||||||| | || || ||||| || | | ||||| || | |||| ||||| ||
Sbjct 275 TCCGATCCATGGG-ATTTACCAGCTAAGGC-TCCATTTGGGGAGA-AAGAGTGGTATTTT 331
Query 352 TTCAGTCCTCGAGATCGGAAGTATCCAAACGGAGCAAGACCAAACAGAGCGGCAACTTCA 411
|||||||| | ||| |||| ||||||||||||||||||||||||||||| || | ||
Sbjct 332 TTCAGTCCGAGGGATAGGAAATATCCAAACGGAGCAAGACCAAACAGAGCAGCTGCGTCT 391
Query 412 GGATATTGGAAAGCGACCGGTACAGATAAA 441
|||||||||||||| ||||| |||||||||
Sbjct 392 GGATATTGGAAAGCAACCGGAACAGATAAA 421
> AT1G52890.1 | Symbols: ANAC019, NAC019 | NAC domain containing
protein 19 | chr1:19697004-19698482 REVERSE LENGTH=1280
Length=1280
Score = 122 bits (66), Expect = 7e-27
Identities = 288/391 (74%), Gaps = 32/391 (8%)
Strand=Plus/Plus
Query 187 TTCCGGTTTCACCCAACCGATGAAGAGCTTGTGGTTCATTACCTC-AAACGCAAAGCCGC 245
||||| ||| |||| ||||||||||||||| ||||||| || ||| | | ||||| |
Sbjct 90 TTCCGATTTTACCCGACCGATGAAGAGCTTATGGTTCAATATCTCTGTA-GAAAAGCAG- 147
Query 246 CTCTGCT-C-CTTTAC-CT-GT-AGCCATCATCGCCGAAGTCGATCTCTATAAATTCGAT 300
|| | | | ||| | || | || | ||||||||||| | ||||| || |||||||||
Sbjct 148 CT-GGTTACGATTT-CTCTCTTCAG-C-TCATCGCCGAAATAGATCTTTACAAATTCGAT 203
Query 301 CCATGGGAACTT-CCCGCTAAAGCGTCGTTTGGAGAACAAGAATGGTACTTCTTCAGTCC 359
||||||| || || |||||| | ||||||||| |||||||||| || || |||||
Sbjct 204 CCATGGG-TTTTACCAAATAAAGCATTATTTGGAGAAAAAGAATGGTATTTTTTTAGTCC 262
Query 360 TCGAGATCGGAAGTATCCAAACGGAG-CAAGACCAAACAGAGCGGCAACTTCAGGATATT 418
| | ||| | || ||||||||||| | ||||||| ||| | | || || || ||||
Sbjct 263 TAGGGATAGAAAATATCCAAACGG-GTCAAGACCTAACCGGGTTGCCGGATCGGGTTATT 321
Query 419 GGAAAGCGACCGGTACAGATAAACCGGTACTTGCTTCCGACGGTAACCA-AAAG-GTGGG 476
||||||| || ||||| |||||| || | | | |||||| || | |||| || ||
Sbjct 322 GGAAAGCTACGGGTACGGATAAA---ATA-AT-C-T-CGACGG-AAGGACAAAGAGTTGG 373
Query 477 CGTGAAGAAGGCACTGGTCTTCTACAGT-GGTAAACCACCAAAAGG--CGTGAAAAGTGA 533
| || || || |||| || |||| | || ||| | || ||||| | | |||| |
Sbjct 374 TATTAAAAAAGCTTTGGTGTTTTACA-TCGGAAAAGCTCCTAAAGGTAC-T-AAAACCAA 430
Query 534 TTGGATCATGCATGAGTATCGTCTCATCGAA 564
||||||||||||||||||||||||||| |||
Sbjct 431 TTGGATCATGCATGAGTATCGTCTCATTGAA 461
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76907234940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5