BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg478998 Length=596 Score E Sequences producing significant alignments: (Bits) Value AT3G15518.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 881 0.0 AT3G15520.1 | Symbols: | Cyclophilin-like peptidyl-prolyl cis-... 176 2e-43 > AT3G15518.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:5249112-5249754 FORWARD LENGTH=643 Length=643 Score = 881 bits (477), Expect = 0.0 Identities = 562/602 (93%), Gaps = 9/602 (1%) Strand=Plus/Plus Query 1 GTGTTTCTTTAATATAGAG-AAGAAGACTCCCTTGACTCTCTCTCTCACAGCCAGTTTAT 59 ||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||| Sbjct 1 GTGTTTCTTTAATATAGAGAAAGAAGACTCCCTTGA--CTCTCTCTCACAGCTAGTTTAT 58 Query 60 AAAGAAACGTTTCTTGCAAAATTCCTAGCAAGAGAGATA--TTAGTTACTTATGCAGGTT 117 |||||||||||||||||||||||| |||||||||| | | | ||||||||||||||||| Sbjct 59 AAAGAAACGTTTCTTGCAAAATTCTTAGCAAGAGATACACGTCAGTTACTTATGCAGGTT 118 Query 118 GCGAGAAGGATCCCATCAGGAGAAGGCGTAGAGATGCCGGGAAGATCAGAGACGAATCGG 177 |||||||||||||||| || ||||||||||||||||| |||||||| ||||| || ||| Sbjct 119 TCGAGAAGGATCCCATCTGGTGAAGGCGTAGAGATGCCAGGAAGATCCGAGACCAACCGG 178 Query 178 GTCAGACGAAGAAGCCATGGGTCAGGTCTGAGGGTTCGAGTAGCTTGCACGTGCTCAGGA 237 ||||||| || ||||| |||||||||||||||||||| ||||||||||| ||||||||| Sbjct 179 ATCAGACGGAGGAGCCACGGGTCAGGTCTGAGGGTTCGGGTAGCTTGCACTTGCTCAGGA 238 Query 238 CGGCCTGGTTCGACGAAGTGTGCACGGCACGGGTTTATGGTGCCAAGCGATGAGAGGCTT 297 ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 239 CGGCCTGGTTCAACGAAGTGTGCACGGCACGGGTTTGTGGTGCCAAGCGATGAGAGGCTT 298 Query 298 ATGCGGAAGGCGAGTGACGGAAGCAGAGAGGTGTTGAGGAGAGCTTTGACACCTCCGATC 357 |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 299 ATGCGGAAGGCGAGTGACGGAAGCAGAGAGGTGTTGCGAAGAGCTTTGACACCTCCGATC 358 Query 358 CGGCGGATGAATCTCCGGTGGTTGAATTTCAGGCCAACACCTAGCCGACTCTGTAAAATG 417 ||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||| Sbjct 359 CGGCGGATGAATCTCCGGTGGTTAAATTTCCGGCCAACACCTAGCCGTCTCTGTAAAATG 418 Query 418 TCTTCTGTTTGATCATAAAACTGGGACTCAAAAA-TCAAGGCTGAGAACTTTTTTGTTTG 476 |||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||| | Sbjct 419 TCTTCTGTTTGATCATGAAACTGGGACTCAAAAAATCAAGGCTGAGAACTTTTTGGTT-G 477 Query 477 AATGTAAATAGAATTCAAAGCTTTTCTTTTTCTTGTATTGTTGGAAATCCAATAAGAATC 536 |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 478 AATGTAAATAGAGCTCAAAGCTTTTCTTTTTCTTGTAATGTTGGAAATCCAATAAGAATC 537 Query 537 AGACCCAATTGCAGAGAGTTGAAACT-T-AGCACTCTGTTTATGGACAAGAAAGTCTTAG 594 | |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| Sbjct 538 ATACCCAATTGCAGAGAGTTGAAACTCTTAGCACTCTGTTTATGGACAAGAAAGTCTTAG 597 Query 595 AA 596 || Sbjct 598 AA 599 > AT3G15520.1 | Symbols: | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | chr3:5249599-5252506 REVERSE LENGTH=1615 Length=1615 Score = 176 bits (95), Expect = 2e-43 Identities = 104/108 (96%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 491 TCAAAGCTTTTCTTTTTCTTGTATTGTTGGAAATCCAATAAGAATCAGACCCAATTGCAG 550 ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 1611 TCAAAGCTTTTCTTTTTCTTGTAATGTTGGAAATCCAATAAGAATCATACCCAATTGCAG 1552 Query 551 AGAGTTGAAACT-T-AGCACTCTGTTTATGGACAAGAAAGTCTTAGAA 596 |||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct 1551 AGAGTTGAAACTCTTAGCACTCTGTTTATGGACAAGAAAGTCTTAGAA 1504 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28683697937 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5