BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg478998

Length=596
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G15518.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   881    0.0  
  AT3G15520.1 | Symbols:  | Cyclophilin-like peptidyl-prolyl cis-...   176    2e-43


> AT3G15518.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; Has 30201 Blast 
hits to 17322 proteins in 780 species: Archae - 12; Bacteria 
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:5249112-5249754 
FORWARD LENGTH=643
Length=643

 Score =  881 bits (477),  Expect = 0.0
 Identities = 562/602 (93%), Gaps = 9/602 (1%)
 Strand=Plus/Plus

Query  1    GTGTTTCTTTAATATAGAG-AAGAAGACTCCCTTGACTCTCTCTCTCACAGCCAGTTTAT  59
            ||||||||||||||||||| ||||||||||||||||  |||||||||||||| |||||||
Sbjct  1    GTGTTTCTTTAATATAGAGAAAGAAGACTCCCTTGA--CTCTCTCTCACAGCTAGTTTAT  58

Query  60   AAAGAAACGTTTCTTGCAAAATTCCTAGCAAGAGAGATA--TTAGTTACTTATGCAGGTT  117
            |||||||||||||||||||||||| |||||||||| | |  | |||||||||||||||||
Sbjct  59   AAAGAAACGTTTCTTGCAAAATTCTTAGCAAGAGATACACGTCAGTTACTTATGCAGGTT  118

Query  118  GCGAGAAGGATCCCATCAGGAGAAGGCGTAGAGATGCCGGGAAGATCAGAGACGAATCGG  177
             |||||||||||||||| || ||||||||||||||||| |||||||| ||||| || |||
Sbjct  119  TCGAGAAGGATCCCATCTGGTGAAGGCGTAGAGATGCCAGGAAGATCCGAGACCAACCGG  178

Query  178  GTCAGACGAAGAAGCCATGGGTCAGGTCTGAGGGTTCGAGTAGCTTGCACGTGCTCAGGA  237
             ||||||| || ||||| |||||||||||||||||||| ||||||||||| |||||||||
Sbjct  179  ATCAGACGGAGGAGCCACGGGTCAGGTCTGAGGGTTCGGGTAGCTTGCACTTGCTCAGGA  238

Query  238  CGGCCTGGTTCGACGAAGTGTGCACGGCACGGGTTTATGGTGCCAAGCGATGAGAGGCTT  297
            ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  239  CGGCCTGGTTCAACGAAGTGTGCACGGCACGGGTTTGTGGTGCCAAGCGATGAGAGGCTT  298

Query  298  ATGCGGAAGGCGAGTGACGGAAGCAGAGAGGTGTTGAGGAGAGCTTTGACACCTCCGATC  357
            |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct  299  ATGCGGAAGGCGAGTGACGGAAGCAGAGAGGTGTTGCGAAGAGCTTTGACACCTCCGATC  358

Query  358  CGGCGGATGAATCTCCGGTGGTTGAATTTCAGGCCAACACCTAGCCGACTCTGTAAAATG  417
            ||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||
Sbjct  359  CGGCGGATGAATCTCCGGTGGTTAAATTTCCGGCCAACACCTAGCCGTCTCTGTAAAATG  418

Query  418  TCTTCTGTTTGATCATAAAACTGGGACTCAAAAA-TCAAGGCTGAGAACTTTTTTGTTTG  476
            |||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||| |
Sbjct  419  TCTTCTGTTTGATCATGAAACTGGGACTCAAAAAATCAAGGCTGAGAACTTTTTGGTT-G  477

Query  477  AATGTAAATAGAATTCAAAGCTTTTCTTTTTCTTGTATTGTTGGAAATCCAATAAGAATC  536
            ||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  478  AATGTAAATAGAGCTCAAAGCTTTTCTTTTTCTTGTAATGTTGGAAATCCAATAAGAATC  537

Query  537  AGACCCAATTGCAGAGAGTTGAAACT-T-AGCACTCTGTTTATGGACAAGAAAGTCTTAG  594
            | |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct  538  ATACCCAATTGCAGAGAGTTGAAACTCTTAGCACTCTGTTTATGGACAAGAAAGTCTTAG  597

Query  595  AA  596
            ||
Sbjct  598  AA  599


> AT3G15520.1 | Symbols:  | Cyclophilin-like peptidyl-prolyl cis-trans 
isomerase family protein | chr3:5249599-5252506 REVERSE 
LENGTH=1615
Length=1615

 Score =  176 bits (95),  Expect = 2e-43
 Identities = 104/108 (96%), Gaps = 2/108 (2%)
 Strand=Plus/Minus

Query  491   TCAAAGCTTTTCTTTTTCTTGTATTGTTGGAAATCCAATAAGAATCAGACCCAATTGCAG  550
             ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct  1611  TCAAAGCTTTTCTTTTTCTTGTAATGTTGGAAATCCAATAAGAATCATACCCAATTGCAG  1552

Query  551   AGAGTTGAAACT-T-AGCACTCTGTTTATGGACAAGAAAGTCTTAGAA  596
             |||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct  1551  AGAGTTGAAACTCTTAGCACTCTGTTTATGGACAAGAAAGTCTTAGAA  1504



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28683697937


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5