BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479001
Length=1372
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15530.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1999 0.0
> AT3G15530.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr3:5252875-5254562
REVERSE LENGTH=1508
Length=1508
Score = 1999 bits (1082), Expect = 0.0
Identities = 1245/1321 (94%), Gaps = 21/1321 (2%)
Strand=Plus/Plus
Query 59 TTGAGATCTGTTCTTGTTTCTAGAAGAAAACAGCTTGTTTTCACCGTCTCTGATCCTCTT 118
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 188 TTGAGATCTGTTTTTGTTTCTAGAAGAAAACAGCTTGTTTTCACCGTCTCTGATCCTC-T 246
Query 119 GATTTGATCGGAATCTGGAATCAAATGGGTAAAACCGCCGGAAACAGAGATTGGACTCAG 178
||||||||||||||| | ||||||||||||| |||| ||||||||||||||||||
Sbjct 247 GATTTGATCGGAATC-----T--AATGGGTAAAACCACCGGGAACAGAGATTGGACTCAG 299
Query 179 ATCTACGCTATTTACGGAATCGAACAATGGCAGACACTCGtcttccttctcttccatgct 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ATCTACGCTATTTACGGAATCGAACAATGGCAGACACTCGTCTTCCTTCTCTTCCATGCT 359
Query 239 tttttcttctcactcctctctgttctcttcctcatctacttcGATCAGATTTGCTTCTTC 298
|| |||||||| || |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTCTTCTTCTCTCTTCTCTCTCTTCTCTTCCTCATCTACTTCGATCAGATTTGCTTCTTC 419
Query 299 CTCGATTCCTTCTTCCTCTCCGGCGCCGCCAGGTTAGCCGCGGGTTTCACCGGCGCTGTA 358
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 420 CTCGATTCCTTCTTCCTCTCCGGCGCCGCCAGATTAGCCGCGGGTTTCACCGGTGCTGTA 479
Query 359 ACCGCTCTCTCCGCGGTTTGTCTCCTCTTCGCCGCTGCTAATTTCGTTTACTCCGATGTT 418
||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct 480 ACCGCTCTCTCCGCGGTTTGTCTACTCTTCGCCGCAGCTAATTTCGTTTACTCAGATGTT 539
Query 419 CCGCTTCAGTACGAGATGGCTCAACGCATGGTTAGCTCCGTCGGTGACTGGTCTTCTGTC 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 540 CCGCTTCAGTACGAGATGGCTCAACGCATGGTTAGCTCCGTCGGTGACTGGTCTTGTGTC 599
Query 479 AAAACTGCTCTCGATCTCGGTTGTGGCCGTGGTATCCTCCTCAATGCCGTCGCTACTCAG 538
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 600 AAAACTGCTCTCGATCTCGGTTGTGGCCGTGGTATCCTCCTCAATGCCGTCGCTACACAG 659
Query 539 CTTAAGAAAACCGGTAGCTCTGGTCGGGTCGTCGGGTTAGACCGCTCTAAACGCACCACT 598
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 660 CTTAAGAAAACCGGTAGCTCCGGTCGGGTCGTCGGGTTAGACCGCTCTAAACGCACCACT 719
Query 599 CTCTCCACTCTCCGTACCGCTAAACTCGAAGGTGTGCAAGAGTATGTGACTTGCCGTGAA 658
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 720 CTCTCCACTCTCCGCACCGCTAAACTCGAAGGTGTGCAAGAGTATGTGACATGCCGTGAA 779
Query 659 GGAGATGTTAAAACGTTACCGTTTGGGGATAACTACTTCGACGTGGTGGTCTCGTCTGTG 718
|||||||| || ||||| |||||||| ||||| ||||||||||||||||||||||| |||
Sbjct 780 GGAGATGTGAAGACGTTGCCGTTTGGCGATAATTACTTCGACGTGGTGGTCTCGTCGGTG 839
Query 719 TTCGTTCACACCGTGGGGAAAGAGCATGGTCAGAAGTCGGTGGAAGCGGCGGCGGAGAGA 778
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 840 TTCGTTCACACGGTGGGGAAAGAGCATGGTCAGAAGTCGGTGGAAGCTGCGGCGGAGAGA 899
Query 779 ATGAGAGTGCTCGGAGAGATTGTTAGAGTTGTGAAGCCAGGAGGTTTGTGTGTGGTTTGG 838
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 900 ATGAGAGTGCTCGGAGAGATTGTGAGAGTTGTGAAGCCAGGAGGTTTGTGTGTGGTTTGG 959
Query 839 GATCTCTTACACGTGCCGGAGTACGTGCGGCGTCTTCAAGAGCTGAAGATGGAAGATATC 898
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 960 GATCTCTTACACGTGCCGGAGTACGTGCGTCGTCTTCAAGAGCTAAAGATGGAAGATATA 1019
Query 899 CGAGTCTCCGAGCGAGTCACGGCGTTTATGGCCGGAAGTCACATCGTGTCGTTCCGGAAA 958
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1020 CGAGTCTCGGAGCGAGTCACGGCGTTTATGGCCGGAAGTCACATCGTTTCGTTCCGGAAA 1079
Query 959 CCCAGTGAACTCGTCGCCGGACCCCGTGAAGTCCGCCTCGATTGGAGATGATGACGTGGC 1018
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1080 CCCAGTGAACTCGTCGCCGGGCCCCGTGAAGTCCGCCTCGATTGGAGATGATGACGTGGT 1139
Query 1019 GTTCAAAACGGCTGTGTTGTGTGTCGGTTCGTTATATAGAAAACGGCACGTAGTCT-AAG 1077
|||||||||| | ||| ||||||||||||||||||||| ||||||||||||||| | |||
Sbjct 1140 GTTCAAAACGACAGTGATGTGTGTCGGTTCGTTATATAAAAAACGGCACGTAGT-TGAAG 1198
Query 1078 ---TCTGGAGATTCGAAACTATAATTGTGATATATTAATTACGAATCTACTG-TACTAAA 1133
||||||| ||||| ||||||||||| |||||||||||||||||||||| ||||| |
Sbjct 1199 AAGTCTGGAGGTTCGACACTATAATTGTAATATATTAATTACGAATCTACTACTACTACA 1258
Query 1134 CTAGAAAATCAAAATGTTTGTGGCGTCTGGGGAGGCGAAGCGGAACCAGATGCTTA-ATG 1192
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1259 CTAGAAAATCAAAATGTATGTGGCGTCTGGGGAGGCGAAGCGGAACCAGATGCTTTGATG 1318
Query 1193 AAGAGGCATGACGCTGCGTTTGCGTTTTTGTCTTGTATTTGTATAAGCTATAGTATTATT 1252
||||||||| |||||||||||||||||||||||||||||||||||| ||||||| || ||
Sbjct 1319 AAGAGGCATAACGCTGCGTTTGCGTTTTTGTCTTGTATTTGTATAACCTATAGT-TT-TT 1376
Query 1253 AACAACATATTAAGCTGAATCTGAATGTGTGATTCAGAGAAATAGTCTTTTCACTGTTGC 1312
| ||||||||||||||||||| ||| |||||||||||||| |||||||| ||||||||
Sbjct 1377 ATTAACATATTAAGCTGAATCTTAATATGTGATTCAGAGAAG-AGTCTTTTTACTGTTGC 1435
Query 1313 GATTTCAAACGCGTGTaaaaaaaCTAACGTCGTGTAGAGAAGTAGC-GACACTTTGAAAC 1371
| ||||||||||| |||||||| ||||||||||| ||||||||||| || ||||||||||
Sbjct 1436 GTTTTCAAACGCGGGTAAAAAA-CTAACGTCGTGGAGAGAAGTAGCTGA-ACTTTGAAAC 1493
Query 1372 T 1372
|
Sbjct 1494 T 1494
Score = 65.8 bits (35), Expect = 1e-09
Identities = 35/35 (100%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 25 ACCTTCTTCTTCATCGTCTCAGCTCAGGAATTGCT 59
|||||||||||||||||||||||||||||||||||
Sbjct 135 ACCTTCTTCTTCATCGTCTCAGCTCAGGAATTGCT 169
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67569933570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5