BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479003
Length=875
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15540.1 | Symbols: IAA19, MSG2 | indole-3-acetic acid induc... 1317 0.0
> AT3G15540.1 | Symbols: IAA19, MSG2 | indole-3-acetic acid inducible
19 | chr3:5264024-5265678 FORWARD LENGTH=970
Length=970
Score = 1317 bits (713), Expect = 0.0
Identities = 847/906 (93%), Gaps = 31/906 (3%)
Strand=Plus/Plus
Query 1 AAGAGAAGTGTTGGAGAAGAAAGTTCTCATTCCATAATTGTATCAAATTGT-----G--- 52
||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1 AAGAGAAGTGTAGGAGAAGAAAGTTCTCATTTCATAATTGTATCAAATTGTGAGAGGAAA 60
Query 53 ---AG-AG-TCAAGAAATGGAGAAGGACGGACTCGGGCTTGAGATAACGGAGCTGAGATT 107
|| || |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 AAAAGAAGTTCAAGAAATGGAGAAGGAAGGACTCGGGCTTGAGATAACGGAGCTGAGATT 120
Query 108 GGGGCTTCCGGGGAGAGATGTGGCGGAGAAGATGATGAAGAAGAGAGCTTTCACGGAGAT 167
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 121 GGGGCTTCCGGGGAGAGATGTGGCAGAGAAGATGATGAAGAAGAGAGCTTTCACGGAGAT 180
Query 168 GAACATGACGTCTTCTGGTAGTAATAGTGATCAATGTGAAAGCGGCGTCGTTTCATCTGG 227
||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAATATGACGTCGTCGGGTAGTAATAGTGATCAATGTGAAAGCGGCGTCGTTTCATCTGG 240
Query 228 TGGTGACGTTGAGAAGGTTAATGATTCGCCGGCGGCAAAAAGTCAGGTGGTGGGGTGGCC 287
|||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 241 TGGTGACGCTGAGAAGGTTAATGATTCGCCGGCGGCGAAAAGCCAGGTGGTGGGGTGGCC 300
Query 288 ACCGGTTTGCTCTTACCGGAGGAAAAACAGCTGTAAGGAAGCTTCGACCACAAAAGTGGG 347
||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 301 ACCGGTTTGTTCTTACCGGAAGAAAAACAGCTGTAAGGAAGCTTCGACCACGAAAGTGGG 360
Query 348 TTTAGGGTATGTGAAAGTTAGCATGGATGGTGTGCCTTATTTGAGGAAGATGGATCTTGG 407
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTTAGGGTATGTGAAAGTGAGCATGGATGGTGTGCCTTATTTGAGGAAGATGGATCTTGG 420
Query 408 TTCGAGCCAAGGCTATGATGATCTAGCCTTTGCTCTTGATAAGCTTTTCGGTATCCGTGG 467
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 421 TTCGAGCCAAGGCTATGATGATCTAGCCTTTGCTCTTGATAAGCTCTTCGGTTTCCGTGG 480
Query 468 CATCGGTGTGGCCTTGAAAGATGGTGACAACTGCGAATACGTTACCATATACGAGGACAA 527
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 481 CATCGGTGTGGCCTTGAAAGATGGTGACAACTGCGAATACGTTACCATATACGAAGACAA 540
Query 528 AGATGGAGACTGGATGCTCGCCGGCGATGTACCTTGGGGGATGTTTATAGAGTCATGCAA 587
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 541 AGATGGAGACTGGATGCTCGCCGGTGATGTACCTTGGGGGATGTTTCTAGAGTCATGCAA 600
Query 588 GAGGCTGAGGATAATGAAAAGATCGGATGCTTCCGGGTTTGGGCTGCAGCCTAGAGGAGT 647
|||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 601 GAGGTTGAGAATAATGAAAAGATCGGATGCTACCGGGTTTGGGCTGCAGCCTAGAGGAGT 660
Query 648 AGACGAGTGATGATGACTTGAACAAGAAGCAAGAAGCTGGTTAATTAATTTAACCTTAAA 707
||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||
Sbjct 661 AGACGAGTGATGATGACTTGAACAAGAAGCAAGGAGCTGGTTCATTAATTTAATCTTAAA 720
Query 708 CATGATCATCAAGATCCTTTAGAACATTTTTCCTATTCATGTTATATAAATATAT-T-TT 765
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 721 CTTGATCATCAAGATCCTTTAGAACATTTTTCCTATTCATGTTATATAAATATATATGTT 780
Query 766 ---G------------CAACAAAATTTCAAGTTATGGTTT-GCATAATTATCTTCAGAAA 809
| ||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 781 ATAGTATATTATTTTGCAACAAAATTTCATGTTATGGTTTTGCATAATTATCTTCAGAAA 840
Query 810 GACAGCtatatatatataCACTACTTGTTTCTTGAGTGTTGAGTTAAAACATTAATCTGT 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GACAGCTATATATATATACACTACTTGTTTCTTGAGTGTTGAGTTAAAACATTAATCTGT 900
Query 870 TTCAAA 875
||||||
Sbjct 901 TTCAAA 906
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42699024950
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5