BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479008
Length=2066
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15590.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 3096 0.0
> AT3G15590.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:5275401-5277991 REVERSE LENGTH=2150
Length=2150
Score = 3096 bits (1676), Expect = 0.0
Identities = 1961/2094 (94%), Gaps = 38/2094 (2%)
Strand=Plus/Plus
Query 1 TTGGCACGTATAAACCCTAGCAGAGGCATTAAACCCTGATAGTAGTTAGGGATCAC--TT 58
||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||| ||
Sbjct 29 TTGGCACGTATAAACCCTAGCAGAGACATTAAACCCTGAAAGTAATTAGGGATCACTGTT 88
Query 59 CT----CTCCGGCGAAACAATCACTCGAAAATCGATCCTAACCTCAATTGATTGAAGGAA 114
|| ||||||||||| |||| |||| ||||||||||||||||||||||||||||||||
Sbjct 89 CTCCGGCTCCGGCGAAAAAATCCCTCG-AAATCGATCCTAACCTCAATTGATTGAAGGAA 147
Query 115 GTAATGTATTCGCTTTCGAGGATTCTCCGAAGGAGTCGAAGATATAACTTTGCACCTTCT 174
|| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 148 GTTATGTATTCGCTTTCGAGGATTCTCCAAAGGAGTCAAAGATATAACTTTGCACCTTCT 207
Query 175 TCGTTTGGTGCGGTCAGTAAATTAGAAGTATCATCAAGTGGTGGTGACAAAGAAAGGGTC 234
|||||||||||||||||||||||||||| | ||||||||||||||| |||||| |||||
Sbjct 208 TCGTTTGGTGCGGTCAGTAAATTAGAAG--T-ATCAAGTGGTGGTGATAAAGAACGGGTC 264
Query 235 TTTAAATCATCTGGATTGATTTATAATAAATCTCAAGGTTTAATCAGACTTTATTCCACA 294
|||||||||| |||||||||||||| ||| ||||||||||| |||||||||||||| ||
Sbjct 265 TTTAAATCATTTGGATTGATTTATAGCAAACCTCAAGGTTTAGTCAGACTTTATTCCGCA 324
Query 295 AGAGATGTGTTTTCACGGTTCTTTGGCATCCATAAGCTTTCTTCTATAGCTGATGCTGAA 354
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 325 AGAGATGTGTTTTCACGGTTCTTTGGCATCCACAAGCTTTCTTCTATAGCTGATGCTAAA 384
Query 355 GACAAAGGAGATGAGGTAGTAAGGGAAGAGGAGTTGTCTGAATCAGAGGAGGCGTTTCCT 414
|| ||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||
Sbjct 385 GATAAAGGAGATGAGGTAGTTAGGGAAGAGGAGCTGTCTGAATCAGAGGAGGCGGTTCCT 444
Query 415 GTTTCTGGGGATGTATCAGAGGGAGTTGTTGATGATGATTCTTTGTTCGAGTCTGAGGTT 474
||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 445 GTTTCTGGGGATGTACCAGAGGGAGTTGTTGATGATGATTCTTTGTTCGAGCCTGAACTT 504
Query 475 GGTAGTGACAATGATGGTC------TT-----GAA--ATT-G--A-A-GGTGGGAAACCA 516
|||||||||||||||| || || ||| ||| | | | ||||||||||||
Sbjct 505 GGTAGTGACAATGATGATCTTGAAATTGAAGAGAAGCATTCGAAAGATGGTGGGAAACCA 564
Query 517 ACAAAGAAAAGAGCTCAATCTGAGCTATATGAATCCATTGTTGCCTATAAATCAGTGAAA 576
|| |||||||||| |||||||||||| || |||||||||||||| |||||||||||||||
Sbjct 565 ACTAAGAAAAGAGGTCAATCTGAGCTGTACGAATCCATTGTTGCTTATAAATCAGTGAAA 624
Query 577 CATGTTCTTGAAAAATGGGTCAAAGAAGGAAAAGATTTGAGTCAAGCTGAGGTTTCTCTT 636
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 625 CATGTTCTTGAAAAATGGGTCAAAGAAGGAAAAGATTTGAGTCAAGCTGAGGTTACTCTT 684
Query 637 GCTATATTCCATCTGCGTAAACGTAAATACTATGCTATGTGTTTGCAGTTGTGGGAGTGG 696
|||||| | ||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 685 GCTATACACAATCTGCGTAAACGCAAATCCTATGCTATGTGTTTGCAGTTGTGGGAGTGG 744
Query 697 TTGGGAGCTAATACGCAGTTTGAGTTCACAGAGGCAAATTATGCTTCTCAACTGGATTTG 756
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 745 TTGGGAGCTAATACGCAGTTTGAGTTCACAGAGGCAAATTATGCTTCTCAGTTGGATTTG 804
Query 757 GTGGCCAAGGTACATAGTTTACAAAAAGCTGAAAACTTTTTGAAGGATATTCCAGAATCT 816
|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 805 GTGGCCAAGGTACATAGTTTACAAAAAGCTGAAATCTTTTTGAAAGATATTCCAGAATC- 863
Query 817 TTC-AGGGGAGAAGTGGTATACAGAACCCTGCTGGCAAATTGTGTACTTAAGCATCATGT 875
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 864 TTCTAGGGGAGAAGTAGTATACAGAACCCTGCTGGCAAATTGTGTACTTAAGCATCATGT 923
Query 876 AAATAAAGCTGAAGATC-TTTTTAATAAAATGAAAGAACTAAAATTTCGAACAAGCGTGT 934
||||||||||||||| | |||| || ||||||||||| |||||||||| |||||| ||||
Sbjct 924 AAATAAAGCTGAAGA-CATTTTCAACAAAATGAAAGAGCTAAAATTTCCAACAAGTGTGT 982
Query 935 TTGCTTGCAACCAGCTGCTTCTCCTCTACAGTATGCATGATAGAAAGAAGATAAGTGATG 994
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 983 TTGCTTGCAACCAGCTGCTTCTCCTCTACAGTATGCATGATAGAAAGAAGATAAGTGATG 1042
Query 995 TTTTGTTGCTAATGGAGAGAGAAAACATCAAGCCGAGTCGTGGTACGTATCAGTTTTTAA 1054
|||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||
Sbjct 1043 TTTTGTTGCTAATGGAGAGAGAAAACATCAAGCCGAGTCGTGCTACCTATCATTTTTTAA 1102
Query 1055 TCAATAGTAAAGGTTTAGCTGGGGACATAAATGGAATGGAGAAGATCGTGGAGACAATGA 1114
||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||| |
Sbjct 1103 TCAATAGTAAAGGTTTAGCCGGAGACATAACTGGAATGGAGAAGATCGTGGAGACAATTA 1162
Query 1115 AGGAAGGAGGTATCGAAGTAGATCCAGAACTGCAGTCTACTCTGGCTAAGTACTACATAA 1174
|||||| ||| |||||| ||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1163 AGGAAGAAGGCATCGAACTAGATCCTGAACTGCAGTCTATTCTGGCTAAGTACTACATAA 1222
Query 1175 GAGCGGGGCTTAAAGAACGAGCACAAGACCTTATGAAGGAGATAGAAGGGAAAGGTTTGC 1234
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1223 GAGCGGGGCTTAAAGAAAGAGCACAAGACCTTATGAAGGAGATAGAAGGGAAAGGTTTGC 1282
Query 1235 AACAAACTCCATGGGTGTGCCGGTCATTACTCCCACTTTATGCAGACATAGGAGACAGTG 1294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1283 AACAAACTCCATGGGTGTGCCGGTCATTACTCCCACTTTATGCAGACATAGGAGACAGTG 1342
Query 1295 ACAATGTGAGAAGACTGAGTAGGTTTGTTGATCAAAATCCGAGATATGATAATTGCATTT 1354
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1343 ACAATGTGAGAAGACTGAGTAGGTTTGTTGATCAAAATCCGAGATACGATAATTGCATTT 1402
Query 1355 CTGCCATTAGAGCATGGGGAAAGCTGAAGGAAGTCGAAGAAGCAGAGGCAGTGTTTGAGA 1414
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1403 CTGCCATTAAAGCATGGGGAAAGCTGAAGGAAGTCGAAGAAGCAGAGGCAGTGTTTGAGA 1462
Query 1415 GACTTGTGGAGAAATACAAAATTTTCCCTATGCTGCCATATTTTGCCCTCATGGAGATAT 1474
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1463 GACTTGTGGAGAAATACAAAATTTTCCCTATGATGCCATATTTTGCCCTCATGGAGATAT 1522
Query 1475 ACACAGAGAACAAGATGCTAGCAAAAGGCAAAGATCTGGTTAAAAGAATGGGAAATGCAG 1534
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1523 ACACAGAGAACAAGATGCTAGCAAAAGGCAGAGATCTGGTTAAAAGAATGGGAAATGCAG 1582
Query 1535 GGGTTACGATTGGCCCGTCGACATGGCACGCTCTTGTGAAGCTATACATCAAAGCGGGAG 1594
|| || ||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1583 GGATTGCGATTGGGCCGTCGACATGGCACGCGCTTGTGAAGCTATACATCAAAGCAGGAG 1642
Query 1595 AAGTTGGAAAAGCTGAGTTGATATTGAACAGAGCTACAAAGGATAATAAGATGAGACCTA 1654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1643 AAGTTGGAAAAGCTGAGTTGATATTGAACAGAGCTACAAAGGATAATAAGATGAGACCTA 1702
Query 1655 TGTTCATTTCTTACATGGCGATTCTCGAGGAATATGCAAAAAGAGGCGATGTTCATAACA 1714
|||||| | |||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1703 TGTTCACTACTTACATGGCGATTCTTGAAGAATATGCAAAAAGAGGCGATGTTCATAACA 1762
Query 1715 CAGAGAAGGTATTCATGAAAATGAAAAGGGCAAGCTATGCAGCTCAGCTTATGCAGTATG 1774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1763 CAGAGAAGGTATTCATGAAAATGAAAAGGGCAAGCTATGCAGCTCAGCTTATGCAGTATG 1822
Query 1775 AAACCGTTCTGTTGGCTTATATCAAAGCCAAAACTCCTGCTTACGGGATGTTTGAGAGGA 1834
||||||| || ||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1823 AAACCGTGCTCCTGGCTTATATCAACGCCAAAACTCCTGCTTACGGGATGATTGAGAGGA 1882
Query 1835 TGAAGGCAGATAATGTGTTCCCAAACAAGAGTCTTGCTGCGAAACTGGCTCAGGTTAATC 1894
|||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1883 TGAAGGCAGACAATGTGTTCCCGAACAAGAGTCTAGCTGCGAAACTGGCTCAGGTTAATC 1942
Query 1895 CGTTTAAAAAGTGTCCAGTGTCTGTTTTACTTGACGA-ATGACAATAATCATCCTATGTA 1953
||||||||||||||||||||||||||||||||||| | || || ||||||||| ||||||
Sbjct 1943 CGTTTAAAAAGTGTCCAGTGTCTGTTTTACTTGAC-ATATAACGATAATCATCTTATGTA 2001
Query 1954 TTGAGCGAGCTGTTTTGTTTGTTCTGTTTGCTTCCAAGCTAGGAAATAATAAATAGAGGA 2013
|||||| | | | |||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 2002 TTGAGCT-GTTAAGT-GTTTGTTCTGGTTGCTTCCAAGCTAGGAAATAATAAACAGAGGA 2059
Query 2014 TTCGTTTTTCTTCCAAAGTTTCTCACTTT-GAGGTCTGTGTTCTTGTGGTTTTT 2066
||||||||||||||||||||||||| ||| ||| | ||||||| ||||||||||
Sbjct 2060 TTCGTTTTTCTTCCAAAGTTTCTCATTTTTGAGTT-TGTGTTCCTGTGGTTTTT 2112
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102409111800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5