BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479012
Length=1371
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15610.1 | Symbols: | Transducin/WD40 repeat-like superfami... 1978 0.0
AT1G52730.2 | Symbols: | Transducin/WD40 repeat-like superfami... 1157 0.0
> AT3G15610.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr3:5290847-5293090 REVERSE LENGTH=1549
Length=1549
Score = 1978 bits (1071), Expect = 0.0
Identities = 1190/1246 (96%), Gaps = 13/1246 (1%)
Strand=Plus/Plus
Query 132 TGAATTTTAGCGCCAATTTTACCACTGAATCGTTTGATTAGAAGC-AGCGATTTCGTCTT 190
||||||||||||||||||| ||||||||||||||||||||||||| | ||||| |||||
Sbjct 173 TGAATTTTAGCGCCAATTTAACCACTGAATCGTTTGATTAGAAGCTA-AGATTTGGTCTT 231
Query 191 AGGATCGATCAAATTAGGGttcttcttctt-cttct-tcGTTGTCGTTAAAATTAGTAAA 248
| |||||||| || |||||||||||||||| | | | ||| | |||||||||||||||
Sbjct 232 ACGATCGATCTAAGTAGGGTTCTTCTTCTTAAGTGTGT-GTT-TTGTTAAAATTAGTAAA 289
Query 249 AAGAGATGGAGAAGAAGAAAGTAGCGACTCCGCTAGTGTGCCATGGCCATTCGAGACCTG 308
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 290 GAGAGATGGAGAAGAAGAAAGTCGCGACTCCGCTAGTGTGCCATGGCCATTCGAGACCTG 349
Query 309 TTGTGGATTTGTTCTACAGTCCAATCACACCTGATGGTTTCTTCCTCATCAGCGCAAGCA 368
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 350 TTGTGGATTTGTTCTACAGTCCAATCACTCCTGATGGTTTCTTCCTCATCAGCGCAAGTA 409
Query 369 AAGATTCTCATCCAATGTTGAGAAATGGGGAAACTGGAGATTGGATTGGTACATTTGAAG 428
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 AAGATTCTCAACCAATGTTGAGAAATGGGGAAACTGGAGATTGGATTGGTACATTTGAAG 469
Query 429 GGCATAAAGGTGCTGTGTGGAGTTCTTGT-TTGGATAACAACGCTTTACGTGCAGCTTCT 487
| ||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||
Sbjct 470 GTCATAAAGGTGCTGTGTGGAGTTCTTGTCTT-GATAACAATGCTTTACGTGCAGCTTCT 528
Query 488 GCATCTGCTGATTTTTCAGCGAAACTTTGGGATGCTTTGACCGGGGATGTGTTGCATTCT 547
||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct 529 GCATCTGCTGATTTTTCAGCGAAGCTTTGGGATGCTTTGACTGGGGATGTCTTGCATTCT 588
Query 548 TTTGAGCACAAGCATATTGTTCGAGCATGCGCCTTCTCTCAGGATACGAAATTTCTAATC 607
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 589 TTTGAGCACAAGCATATTGTTCGAGCATGCGCCTTCTCTCAGGATACGAAATATCTAATC 648
Query 608 ACAGGAGGATTTGAGAAAATTCTTCGTGTTTTCGACTTGAATCGCTTGGATGCACCTCCT 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 ACAGGAGGATTTGAGAAAATTCTTCGTGTTTTCGACTTGAATCGCTTGGATGCACCTCCT 708
Query 668 ACAGAAATTGATAAATCTCCTGGTTCTATCAGAACACTAACTTGGCTTCACGGTGATCAA 727
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 709 ACAGAAATTGATAAATCTCCTGGTTCTATCAGAACACTAACATGGCTTCACGGTGATCAA 768
Query 728 ACCATATTAAGTTCTTGCACTGATATTGGCGGTGTGAGGTTATGGGATGTGAGGAGTGGC 787
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 769 ACAATATTAAGTTCTTGCACTGATATTGGTGGTGTGAGGTTATGGGATGTGAGGAGTGGC 828
Query 788 AAAATTGTGCAAACTCTAGAAACCAAGTCTCCTGTCACCAGTGCTGAAGTGAGTCAAGAT 847
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 AAAATAGTGCAAACTCTAGAAACCAAGTCTCCTGTCACCAGTGCTGAAGTGAGTCAAGAT 888
Query 848 GGACGGTATATCACAACTGCCGA-GGGATCAACTGTTAAATTTTGGGATGCAAATCATTT 906
||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 889 GGACGGTATATAACAACTGCCGATGGG-TCAACTGTTAAATTTTGGGATGCAAATCATTT 947
Query 907 TGGACTAGTGAAGAGTTACGACATGCCCTGCAATATCGAATCTGCGTCGCTTGAGCCTAA 966
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 948 TGGACTAGTGAAAAGTTACGACATGCCCTGCAATATCGAATCTGCATCGCTTGAGCCAAA 1007
Query 967 ATCTGGCAACAAGTTCGTTGCTGGTGGAGAAGATATGTGGGTTCGACTCTTTGATTTCCA 1026
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 ATCTGGCAACAAATTCGTTGCTGGTGGAGAAGATATGTGGGTTCGACTCTTTGATTTCCA 1067
Query 1027 CACGGGAGAGGAGATTGGATGCAACAAGGGACATCATGGTCCGGTTCACTGTGTGAGATT 1086
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1068 CACCGGAAAGGAGATTGGATGCAACAAGGGACATCATGGTCCGGTTCACTGTGTGAGATT 1127
Query 1087 TGCACCAACAGGTGAGTCTTATGCTTCAGGGTCTGAAGATGGTACAATCAGAATCTGGCA 1146
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1128 TGCACCAACAGGTGAGTCTTATGCTTCAGGGTCTGAAGATGGTACAATCAGAATTTGGCA 1187
Query 1147 AACTGGTCCGGTGAATCCTGAAGAGAACAGTGAATCAAAACCGAAGCAGAGTGTGGATGA 1206
|||||| ||||||||||||||||||| ||| || ||||| ||||||||||||||||||||
Sbjct 1188 AACTGGACCGGTGAATCCTGAAGAGATCAGCGAGTCAAAGCCGAAGCAGAGTGTGGATGA 1247
Query 1207 GGTTACTCGTAAGATTGAAGGCTTTCACATTAACAAGGAAGGGAAAACCGCAGAGAAACC 1266
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1248 GGTTGCTCGTAAGATTGAAGGCTTTCACATTAACAAGGAAGGAAAAACCGCAGAGAAACC 1307
Query 1267 ATCTGATGCTTAAACCAAGAAATGAACAACAACAAAAATGGCTGCTTCTCTT-GTCTTCT 1325
|||||||||||||||||||||| |||| ||| ||||||||||||||||||| |||||||
Sbjct 1308 ATCTGATGCTTAAACCAAGAAAAGAAC--CAAGAAAAATGGCTGCTTCTCTTTGTCTTCT 1365
Query 1326 TACTGTGTTTTTACTTCCAGACTGAATATACGGAAATTTAAAACAA 1371
|||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1366 TACTGTGTTTTTACTTCCAGACTGAATATACGGAAATTCAAAACAA 1411
Score = 167 bits (90), Expect = 3e-40
Identities = 100/104 (96%), Gaps = 3/104 (3%)
Strand=Plus/Plus
Query 1 GAATTTTCGGGAAGCAGCATTTCCACTGGAGCTGCAATAATCTTCCTATCAAAATTATAG 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 GAATTTTCGGGAAGCAGCATTTCCACTGGAGCTGCAA-AATCTTCCTATCAAAATTATAG 59
Query 61 ATCGATCCAAGTTTTAGATTCGAGAAA-ATTTTTCTCCAAATTA 103
|||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 60 ATCGATCCAAGTTTTAGATTCGAGAATTATTTT-CTCCAAATTA 102
> AT1G52730.2 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:19642490-19645134 FORWARD LENGTH=1379
Length=1379
Score = 1157 bits (626), Expect = 0.0
Identities = 910/1045 (87%), Gaps = 28/1045 (3%)
Strand=Plus/Plus
Query 252 AGATGGAGAAGAAGAAAGTAG-CGACTCCGCTAGTGTGCCATGGCCATTCGAGACCTGTT 310
|||||||||||||||| || | ||| ||| | |||||| ||||||||||| |||||||||
Sbjct 190 AGATGGAGAAGAAGAAGGT-GACGATTCCACAAGTGTGTCATGGCCATTCAAGACCTGTT 248
Query 311 GTGGATTTGTTCTACAGTCCAATCACACCTGATGGTTTCTTCCTCATCAGCGCAAGCAAA 370
|| |||||||||||||||||||| || ||||| |||||||||||||||||||| ||||||
Sbjct 249 GTTGATTTGTTCTACAGTCCAATTACTCCTGACGGTTTCTTCCTCATCAGCGCTAGCAAA 308
Query 371 GATTCTCATCCAATGTTGAGAAATGGGGAAACTGGAGATTGGATTGGTACATTTGAAGGG 430
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 309 GATTCGCATCCAATGTTGAGAAATGGGGAAACTGGAGACTGGATTGGTACATTTGAAGGG 368
Query 431 CATAAAGGTGCTGTGTGGAGTTCTTGTTTGGATAACAACGCTTTACGTGCAGCTTCTGCA 490
||||||||||| || |||||||||||| |||||||||| || |||||||| || |||||
Sbjct 369 CATAAAGGTGCAGTTTGGAGTTCTTGTCTGGATAACAATGCATTACGTGCTGCATCTGCT 428
Query 491 TCTGCTGATTTTTCAGCGAAACTTTGGGATGCTTTGACCGGGGATGTGTTGCATTCTTTT 550
||||| ||||||||||| |||||||||||||| || || ||||||||| |||||||||||
Sbjct 429 TCTGCCGATTTTTCAGCCAAACTTTGGGATGCGTTAACAGGGGATGTGCTGCATTCTTTT 488
Query 551 GAGCACAAGCATATTGTTCGAGCATGCGCCTTCTCTCAGGATACGAAAT-TTCTAATCAC 609
||||||||||||||||| ||||||||||||||||| ||||||| |||| | | ||||
Sbjct 489 GAGCACAAGCATATTGTCCGAGCATGCGCCTTCTCAGAGGATACAAAATCGT-TGCTCAC 547
Query 610 AGGAGGATTTGAGAAAATTCTTCGTGTTTTCGACTTGAATCGCTTGGATGCACCTCCTAC 669
|||||| ||||||||||||||||||||||| ||| ||||||| |||||||||||||||||
Sbjct 548 AGGAGGGTTTGAGAAAATTCTTCGTGTTTTTGACATGAATCGGTTGGATGCACCTCCTAC 607
Query 670 AGAAATTGATAAATCTCCTGGTTCTATCAGAACACTAACTTGGCTTCACGGTGATCAAAC 729
|||| |||||||||||||||||||||||||||| || || ||||||||| ||||||||||
Sbjct 608 AGAAGTTGATAAATCTCCTGGTTCTATCAGAACCCTCACATGGCTTCACAGTGATCAAAC 667
Query 730 CATATTAAGTTCTTGCACTGATATTGGCGGTGTGAGGTTATGGGATGTGAGGAGTGGCAA 789
||||||||||| || ||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 668 AATATTAAGTTCATGTACTGATATTGGCGGTGTAAGGTTATGGGATGTGAGGAGTGGGAA 727
Query 790 AATTGTGCAAAC-TCTAGAAACCAAGTCTCCTGTCACCAGTGCTGAAGTGAGTCAAGATG 848
|||||||||||| | ||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 728 AATTGTGCAAACGT-TAGAAACTAAGTCTCCTGTCACCAGTGCTGAAGTGAGCCAAGATG 786
Query 849 GACGGTATATCACAACTGCCGA-GGGATCAACTGTTAAATTTTGGGATGCAAATCATTTT 907
|||||||||| |||||||| || ||| |||||||||||||| ||||| || || ||||||
Sbjct 787 GACGGTATATAACAACTGCTGATGGG-TCAACTGTTAAATTCTGGGACGCTAACCATTTT 845
Query 908 GGACTAGTGAAGAGTTACGACATGCCCTGCAATATCGAATCTGCGTCGCTTG-AGCCTAA 966
||||||||||||||||||||||||||||||||||| |||||||| ||| ||| |||| ||
Sbjct 846 GGACTAGTGAAGAGTTACGACATGCCCTGCAATATTGAATCTGCATCG-TTGGAGCC-AA 903
Query 967 A-TCTGGC-AACAAGTTCGTTGCTGGTGGAGAAGATATGTGGGTTCGACTCTTTGATTTC 1024
| ||||| || || || |||||||||||||| ||||||||||| ||| | |||||||||
Sbjct 904 AGTCTGGTGAAAAATTT-GTTGCTGGTGGAGAGGATATGTGGGTCCGAGTGTTTGATTTC 962
Query 1025 CACACGGGAGAGGAGATTGGATGCAACAAGGGACATCATGGTCCGGTTCACTGTGTGAGA 1084
|||| || || |||||||||||||||||||||||||| ||||| || ||||| || ||
Sbjct 963 TACACTGGCGAAGAGATTGGATGCAACAAGGGACATCACGGTCCAGTACACTGCGTTAGG 1022
Query 1085 TTTGCACCAACAGGTG-AGTCTTATGCTTCAGGG-TCTGAAGATGGTACAATCAGAATCT 1142
||| | || || ||| | || ||||| || ||| |||||||| || |||||||||||||
Sbjct 1023 TTTACTCCCACTGGTTTA-TCCTATGCCTC-GGGATCTGAAGACGGGACAATCAGAATCT 1080
Query 1143 GGCAAACTGGTCCGGTGAATCCTGAAGAGAAC-AG--T-GAATCAA--A-ACCGAAGCAG 1195
||||||| || | ||||| ||||||||| | | | || | | | ||||||
Sbjct 1081 GGCAAACAACACCAGCAAATCCCGAAGAGAACGAAACTAGC-TCGAGGAGAGTGAAGCAT 1139
Query 1196 AGTGTGGATGAGGTTACTC-GTAAGATTGAAGGCTTTCACATTAACAAGGAAGGGAAAAC 1254
|| |||||||| ||| | | |||||||||||||||||||| ||||| ||||| |||||
Sbjct 1140 AGCGTGGATGAAGTTTCAAAG-AAGATTGAAGGCTTTCACATCAACAAAGAAGGAAAAAC 1198
Query 1255 CGCAGAGAAACCATCTGATGCTTAA 1279
||||||||||||||||||| |||||
Sbjct 1199 CGCAGAGAAACCATCTGATACTTAA 1223
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67519733025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5