BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479013
Length=1849
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15620.1 | Symbols: UVR3 | DNA photolyase family protein | c... 2165 0.0
> AT3G15620.1 | Symbols: UVR3 | DNA photolyase family protein |
chr3:5293306-5296592 REVERSE LENGTH=1884
Length=1884
Score = 2165 bits (1172), Expect = 0.0
Identities = 1281/1333 (96%), Gaps = 9/1333 (1%)
Strand=Plus/Plus
Query 1 AGAAATCTCAAACAAT-TTCATGCAACGATTCTCCGTCTGTTCACCTTCAAGCTATCGTC 59
||||||||||||| || |||||||||||||||| |||||||||||||||||| |||||||
Sbjct 26 AGAAATCTCAAAC-ATATTCATGCAACGATTCTGCGTCTGTTCACCTTCAAGTTATCGTC 84
Query 60 TCAATCCCATAACATCAATGGCTACTAGATCCGGTTCACTGATTTGGTTCCGGAAAGGTC 119
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 85 TCAATCCCATAACATCAATGGCTACTGGATCCGGTTCACTGATTTGGTTCCGGAAAGGTC 144
Query 120 TCCGGGTTCACGACAACCCGGCTCTTGAATTCGCTTCAAAAGGTTCTGAATTTATGT-TC 178
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
Sbjct 145 TCCGGGTTCACGACAACCCGGCTCTTGAATACGCCTCAAAAGGTTCTGAATTTATGTAT- 203
Query 179 CCGGTTTTTGTAATCGACCCGCATTATATGGAGTCCGACCCATCTGCCTTCTCTCCCGGT 238
||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 204 CCGGTTTTTGTTATCGACCCGCATTATATGGAGTCAGACCCATCTGCGTTCTCTCCCGGT 263
Query 239 TCGTCTCGCGCTGGGGTTAACCGGATCCGGTTCTTGCTGGAGAGTCTCAAGGATCTCGAT 298
||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 264 TCGTCTCGCGCCGGGGTAAACCGGATCCGGTTCTTGCTTGAGAGTCTCAAGGATCTCGAT 323
Query 299 TCTAGCCTGAAGAAACTTGGTTCACGGTTGCTGGTTCTTAAAGGTGAACCTGGTGAAGTA 358
|||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||
Sbjct 324 TCTAGCCTGAAGAAACTTGGTTCACGGTTGCTTGTTTTTAAAGGTGAACCTGGCGAAGTA 383
Query 359 -TTGTTTCGTTGCTTGCAAGAGTGGAAGGTGAAGAGGCTTTGCTTTGAATATGATACAGA 417
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 384 CTAG-TTCGTTGCTTGCAAGAGTGGAAGGTGAAGAGGCTTTGCTTTGAATATGATACAGA 442
Query 418 TCCGTATTATCAAGCTTTAGATGTTAAAGTTAAGGATTATGCTTCTTCAACTGGAGTTGA 477
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 443 TCCGTATTATCAAGCTTTAGATGTTAAGGTTAAGGATTATGCTTCTTCAACTGGAGTTGA 502
Query 478 GGTTTTCTCTCCAGTGAGCCATACTCTGTTCAATCCCGCAGACGTTATAGAGAAAAACGG 537
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 503 GGTTTTCTCTCCAGTGAGCCATACTCTGTTCAATCCCGCACACATTATAGAGAAAAACGG 562
Query 538 TGGGAAGCCACCTTTGAGTTATCAGTCATTTCTGAAGATTGCTGGGGAGCCGTCATGTGC 597
|||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||
Sbjct 563 TGGGAAGCCACCTTTGAGTTATCAATCATTTCTGAAGGTTGCTGGGGAGCCCTCATGTGC 622
Query 598 TAAATCTGAACTTGTGATGTCTTATTCTTCACTTCCTCCAATTGGAGATGTTGGAAATCT 657
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 623 TAAATCTGAACTTGTGATGTCTTATTCTTCACTTCCTCCAATTGGAGATATTGGAAACCT 682
Query 658 TGGCATTTCAGAAGTACCATCTCTTGAGGAACTTGGCTACAGAGATGATGATGAACAAGC 717
||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct 683 TGGCATTTCAGAAGTACCATCTCTTGAGGAACTTGGCTACA-A-A-GATGATGAACAAGC 739
Query 718 TGATTGGACTCCTTTTAGAGGTGGTGAATCAGAAGCCTTGAAAAGATTGACCAAGTCAAT 777
||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 740 TGATTGGACTCCTTTTAGAGGTGGTGAATCAGAAGCCTTAAAAAGATTGACTAAATCAAT 799
Query 778 TAGTGATAAGGCATGGGTGGCAAACTTTGAGAAACCAAAGGGTGATCCATCTGCTTTCTT 837
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 800 CAGTGATAAGGCATGGGTGGCAAACTTTGAGAAACCAAAGGGTGATCCATCTGCTTTCTT 859
Query 838 GAAGCCTGCAACTACAGTTATGTCACCGTATTTGAAATTTGGATGCCTTTCTTCGAGGTA 897
||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 860 GAAGCCTGCTACTACAGTTATGTCACCATATTTGAAATTCGGATGCCTTTCTTCGAGGTA 919
Query 898 CTTTTATCAATGCCTTCAAAATATTTATAAGGATGTGAAAAAGCATACATCGCCTCCAGT 957
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 920 CTTTTATCAATGCCTTCAAAATATTTATAAGGATGTTAAAAAGCATACATCGCCGCCAGT 979
Query 958 TTCTCTCCTTGGACAGTTGTTGTGGCGAGAATTTTTCTATACCACTGCATTTGGGACCCC 1017
||||||||| || ||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 980 TTCTCTCCTGGGGCAGTTGTTGTGGCGAGAATTTTTCTATACCACTGCATTTGGAACTCC 1039
Query 1018 TAATTTTGACAAAATGAAGGGAAACCGGATCTGCAAACAGATTCCATGGAATGAGGATCA 1077
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1040 TAACTTTGACAAAATGAAGGGAAACCGGATCTGCAAACAGATTCCATGGAACGAGGATCA 1099
Query 1078 TGCTATGTTGGCCGCTTGGAGGGACGGTAAGACAGGATACCCTTGGATTGATGCCATCAT 1137
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1100 TGCTATGTTGGCTGCTTGGAGGGACGGTAAGACAGGATACCCTTGGATTGATGCCATCAT 1159
Query 1138 GGTTCAGCTTCTGAAATGGGGTTGGATGCACCATCTAGCGCGTCATTGTGTAGCCTGTTT 1197
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1160 GGTTCAGCTTCTGAAATGGGGTTGGATGCACCATCTAGCGCGTCACTGTGTAGCCTGTTT 1219
Query 1198 TCTAACTCGTGGGGATCTGTTCATACATTGGGAACAAGGGCGTGATGTGTTTGAGAGACT 1257
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1220 TCTTACTCGTGGGGATCTGTTCATACATTGGGAACAAGGGCGTGATGTGTTTGAGAGACT 1279
Query 1258 TCTGATCGATTCAGACTGGGCAATCAATAATGGCAATTGGATGTGGTTATCATGTTCGTC 1317
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1280 TCTGATCGATTCAGACTGGGCAATCAACAATGGAAATTGGATGTGGTTATCATGTTCGTC 1339
Query 1318 GTTCTTTTACCAG 1330
|||||||||||||
Sbjct 1340 GTTCTTTTACCAG 1352
Score = 652 bits (353), Expect = 0.0
Identities = 429/463 (93%), Gaps = 15/463 (3%)
Strand=Plus/Plus
Query 1391 AAGTATGATCCTGATGGGAAGTACATTAGGCATTTTCTCCCGGTACTGAAAGATATGCCA 1450
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1389 AAGTATGATCCTGATGGGAAGTACATTAGGCATTTTCTACCGGTACTGAAAGATATGCCA 1448
Query 1451 AAGCAGTATATATATGAGCCATGGACAGCACCAATGAGCGTTCAAACTAAAGCAAACTGC 1510
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1449 AAGCAATATATATATGAGCCATGGACAGCACCATTGAGCGTTCAAACTAAAGCAAACTGC 1508
Query 1511 ATAGTAGGGAAGGACTACCCAAAGCCAATGGTATTGCACGATTCAGCAAGCAAGGAGTGC 1570
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1509 ATAGTCGGGAAGGACTACCCAAAGCCAATGGTATTGCACGATTCAGCAAGCAAGGAGTGC 1568
Query 1571 AAGAGGAAGATGGGTGAAGCATATGCATTGAACAAGAAGATGGATGGTAAAGTAGATGAA 1630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1569 AAGAGGAAGATGGGTGAAGCATATGCATTGAACAAGAAGATGGATGGTAAAGTAGATGAA 1628
Query 1631 GAAAATTTGAGGGATTTGAGGAGAAAGCTTGAGAAAGATGAACATGAAGAGTCCAAAATC 1690
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1629 GAAAATTTGAGGGATTTGAGGAGAAAGCTTCAGAAAGATGAACATGAAGAGTCCAAAATC 1688
Query 1691 AGGAACCAACGACCAAAACTCAAATAGGTA-AGGATTaaaaaaaaaaaaaaaCCATTTCT 1749
|||||||||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 1689 AGGAACCAACGACCAAAACTCAAATAGGTAGAGGATTAAAAA----------CCTTTTCT 1738
Query 1750 GCGATTAATGAAGAGGGTATTATTACAACAACTGTAGCTGTTATGACTTAATCATGGTTT 1809
| ||| |||||| | ||||| |||||| || | |||||| ||||||||||||||||||
Sbjct 1739 GAAATTGATGAAGTGTGTATTGTTACAATAATTCTAGCTGGTATGACTTAATCATGGTTA 1798
Query 1810 TCATTT--ATTTCTCTGTAAAAAA-TCTGTTATGCAACAATGT 1849
||||| |||||| ||||||||| ||||||||||| ||||||
Sbjct 1799 -CATTTCTATTTCTATGTAAAAAAATCTGTTATGCATCAATGT 1840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91515593535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5