BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg479015

Length=605
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G15630.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   710    0.0  


> AT3G15630.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; 
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G52720.1); 
Has 61 Blast hits to 61 proteins in 13 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:5296847-5297599 
REVERSE LENGTH=753
Length=753

 Score =  710 bits (384),  Expect = 0.0
 Identities = 431/454 (95%), Gaps = 1/454 (0%)
 Strand=Plus/Plus

Query  1    AAAATTTACAAATCCATAATCTTTCTCTTCTTCCCAAAAACAGCTTTGAGCTTTCTCTCA  60
            ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct  7    AAAATTTACAAATCCTTAATCTTTCTCTTCTTCCTAAAAACAGCTTTGAGCTTTCTCTCA  66

Query  61   GATCATCACATTTTACCTAACAATGGCTACAATCATCGCCTGCTCCGCTATTTCCTCGAT  120
            ||| | ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct  67   GATAACCACATTTTACCTAACAATGGCTACAATCATCTCCTGCTCCGCTCTTTCCTCGAT  126

Query  121  CCGAGCATCTTCCGAATCGGATCCATCCCGTAAGAAACCCGTTTCATCTGTTTCATGGTG  180
            ||||||||||||||||||||||||| ||||||||||||| ||||| || |||||||||||
Sbjct  127  CCGAGCATCTTCCGAATCGGATCCAGCCCGTAAGAAACCTGTTTCGTCGGTTTCATGGTG  186

Query  181  GGCTCCTCTTTTTGGCATGTCATCGGAACCTGATTACGTCAACAAGACCGTGAATCTTGA  240
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct  187  GGCTCCTCTTTTTGGCATGTCATCGGAACCTGATTACGTCAACAAAACCGTGAATCTGGA  246

Query  241  ATCAGATCTGGATAAAACTGACAAGAGGTCTCTGCGATGTTGTCTCACGGAGGAGAAAGC  300
            |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||
Sbjct  247  ATCAGATCTGGATAAAGCTGAAAAGAGGTCTCTGCGATGTTGTCTCACGGAGGAGAAGGC  306

Query  301  TAAGCAGCTGCGGAGGAAAACCGCTGAAGCTTCCACGTTTCACGACGTTATGTACCATTC  360
            |||||||||||||||||||||||| |||||||| || || ||||||||||||||||||||
Sbjct  307  TAAGCAGCTGCGGAGGAAAACCGCCGAAGCTTCTACATTCCACGACGTTATGTACCATTC  366

Query  361  TGCGATCGCGTCGCGACTCGCGTCTGACGTTCGGGTCAAGGAGTAACTGGATCGGATCAC  420
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct  367  TGCGATCGCGTCGCGACTCGCGTCTGACGTTCGGGTCAAGAAGTAACTGGATCGGGTCAC  426

Query  421  GGACTCTAGAAATAATCAATAATTCGTCGAACTT  454
            ||| || |||||||||||||||||||||||||||
Sbjct  427  GGA-TCCAGAAATAATCAATAATTCGTCGAACTT  459



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29135805260


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5