BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479020
Length=779
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15660.1 | Symbols: ATGRX4, GRX4 | glutaredoxin 4 | chr3:530... 1079 0.0
> AT3G15660.1 | Symbols: ATGRX4, GRX4 | glutaredoxin 4 | chr3:5307944-5309557
REVERSE LENGTH=874
Length=874
Score = 1079 bits (584), Expect = 0.0
Identities = 679/723 (94%), Gaps = 14/723 (2%)
Strand=Plus/Plus
Query 65 TTGAATAAATCTGAGAGATTTAGAGATGGCGGCTTCTTTATCGACCAGACTTCTTAAAGG 124
||||| ||||||| | |||||||||||||||||||||||||||| ||||||| | |||||
Sbjct 150 TTGAAGAAATCTGCGTGATTTAGAGATGGCGGCTTCTTTATCGAGCAGACTTATAAAAGG 209
Query 125 AATCGCTAACCTCCAAGCTGTTCGTTCTAGCAGATTGACATCTGCATCAGTCTACCAAAA 184
||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 210 AATCGCTAATCTCAAAGCTGTTCGTTCTAGCAGATTGACGTCTGCATCAGTCTACCAAAA 269
Query 185 TGGGATGATGAGATTTTCCTCTACAGTTCCCAGTGATTCAGACACACATGATGATTTCAA 244
||||||||||||||||||||| ||||| || ||||||||||| |||||||||||||||||
Sbjct 270 TGGGATGATGAGATTTTCCTCAACAGTGCCAAGTGATTCAGATACACATGATGATTTCAA 329
Query 245 GCCTACACAAAAAGCT-CCTTCCGGTTCTACGGACTCGCTCAAAGATATTGTTGAGAATG 303
|||||||||||||| | ||| ||| |||||||||||| || |||||||| ||||||||||
Sbjct 330 GCCTACACAAAAAG-TCCCTCCCGATTCTACGGACTCACTTAAAGATATCGTTGAGAATG 388
Query 304 ATGTGAAGGATAATCCTGTTATGATCTACATGAAAGGTGTCCCTGAATCTCCTCAGTGCG 363
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 389 ATGTGAAGGATAATCCTGTTATGATCTACATGAAAGGTGTCCCTGAATCTCCTCAGTGTG 448
Query 364 GGTTTAGCTCACTAGCCGTCAGAGTTTTGCAGCAATATAATGTTCCTATCAGTTCTAGAA 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 449 GGTTTAGCTCACTAGCCGTCAGAGTTTTGCAGCAATATAATGTTCCTATCAGTTCTAGAA 508
Query 424 ACATTCTAGAAGACCAAGAGTTGAAAAACGCTGTGAAATCTTTCAGCCACTGGCCTACGT 483
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 509 ACATTCTAGAAGACCAAGAGTTGAAAAACGCTGTGAAATCCTTCAGCCACTGGCCTACGT 568
Query 484 TTCCACAGATCTTCATAAAGGGAGAGTTCATTGGCGGCTCAGACATCATTCTTAACATGC 543
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 569 TTCCACAGATCTTCATTAAGGGAGAGTTCATTGGCGGCTCAGACATCATCCTTAACATGC 628
Query 544 ACAAGGAAGGTGAATTGGAGCAGAAGCTTAAAGACGTCTCCGGAAACCAAGATTGATCCA 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 629 ACAAGGAAGGTGAATTGGAGCAGAAGCTTAAAGACGTCTCCGGAAACCAAGATTGATCCA 688
Query 604 AAGGT-GGAAGTTATGCTGACTGATGAATG-AAGTTATTATGTTTTTGTTCTTTCTTTTT 661
||| | ||||||||||||||| || | || ||||||||||||||||||||||||||||
Sbjct 689 AAGTTTGGAAGTTATGCTGAC-GA-G--TGGAAGTTATTATGTTTTTGTTCTTTCTTTTC 744
Query 662 ATAAGAATGTCTTTTGATGTACGGCAA--TAATGTCTCAGAAACTCAAAA-TCTTTGGAT 718
||||||||||||||| |||||||| || ||||||||||||||||||||| |||||||||
Sbjct 745 ATAAGAATGTCTTTTCATGTACGGTAAAATAATGTCTCAGAAACTCAAAAATCTTTGGAT 804
Query 719 TT-GTTATGAACAAAA-CTTTGGTAAACTAAGATAGCAAAAACAAAGAAGCACAAAGAGC 776
|| || ||||| |||| |||||||||||||||||||||||| ||||||||| ||| ||||
Sbjct 805 TTCGT-ATGAATAAAAACTTTGGTAAACTAAGATAGCAAAATCAAAGAAGCCCAACGAGC 863
Query 777 CTT 779
|||
Sbjct 864 CTT 866
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37876546838
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5