BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479021
Length=917
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15670.1 | Symbols: | Late embryogenesis abundant protein (... 1042 0.0
> AT3G15670.1 | Symbols: | Late embryogenesis abundant protein
(LEA) family protein | chr3:5309886-5310988 REVERSE LENGTH=1020
Length=1020
Score = 1042 bits (564), Expect = 0.0
Identities = 697/761 (92%), Gaps = 10/761 (1%)
Strand=Plus/Plus
Query 162 AAGACTTCTCAAACGGCCCAAACAGCCCAACAAAAGGCCCATGAGACAGCCCAGTCAGCT 221
||||| |||||||| |||||| | || || || ||||||||||| || |||||||||||
Sbjct 265 AAGACATCTCAAACTGCCCAAGCGGCTCAGCAGAAGGCCCATGAAACGGCCCAGTCAGCA 324
Query 222 AAAGATAAGACATCTCAAACTGCCCAAACGGCTCAGCAGAAGGCCCATGATACGACTCAA 281
||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||||| |||
Sbjct 325 AAAGAGAAGACATCTCAAACTGCCCAAACGGCACAGCAAAAGGCCCATGAGACGACGCAA 384
Query 282 GCAGCAAAAGACAAGACATCCCAAGCTGGCGACAAAGCTCGCGAGGCCAAGGACAAGACC 341
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 385 GCAGCAAAAGAAAAGACATCTCAAGCTGGCGACAAAGCTCGCGAGGCCAAGGACAAGGCC 444
Query 342 GGGAGCTACATGTCGGAAACAGGCGAAGCCATAAAGAACAAGGCTCAAGACGCTGCTCAG 401
||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GGGAGCTACTTATCGGAGACAGGCGAAGCCATAAAGAACAAGGCTCAAGACGCTGCTCAG 504
Query 402 TACACAAAGGAGACGGCTCAAGGTGCGGCTCAGTACACAAAGGAGACGGCTGAAGCCGGT 461
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 505 TATACAAAGGAGACGGCTCAAGGTGCGGCACAGTACACAAAGGAGACGGCTGAAGCCGGT 564
Query 462 AGAGACAAGACCGGTGGGTTCTTGAGCCAGACCAGTGAGCATGTTAAGCAAATGGCTATG 521
||||||||||| ||||| |||||||||||||| |||||||||||||||||||||| |||
Sbjct 565 AGAGACAAGACGGGTGGATTCTTGAGCCAGACTGGTGAGCATGTTAAGCAAATGGCAATG 624
Query 522 GGTGCAGCTGACGCAGTGAAGCATACTTTTGGGATGGCTACTGATGAGGAAGAAGACAAA 581
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 625 GGTGCAGCTGATGCAGTGAAGCATACTTTTGGGATGGCTAC---TGAGGAAGAAGACAAA 681
Query 582 GAGCATTTTCCAGGAAGTACTACTACCACTACTGCAAGTACCCGGACCACTGATCCGACT 641
||||||| ||||||||||||||||||||||||||||| ||| || |||||||||||||||
Sbjct 682 GAGCATTATCCAGGAAGTACTACTACCACTACTGCAACTACTCGAACCACTGATCCGACT 741
Query 642 CATCAGACTTACCAGAGGAAGTGA-GA-TAACCAAAATTGAGAAGGATATGAAAGTGTCT 699
||||||||||| |||||||||||| || || |||||||||||| ||||||||||| |||
Sbjct 742 CATCAGACTTATCAGAGGAAGTGATGAGAAAACAAAATTGAGAACGATATGAAAGTATCT 801
Query 700 TTAtgtttgttggtcttttgagttctgtg-ttgtacgtttttgtagtttccg-t-tgtct 756
|| |||| |||||||||||||||| |||| |||| ||||||||| |||||| | |||||
Sbjct 802 TTGTGTTAGTTGGTCTTTTGAGTTTTGTGTTTGT--GTTTTTGTAATTTCCGTTGTGTCT 859
Query 757 ttctttgtgtttgtggtttagttgtgtttcttgttgtgATGGTGATCCTGGAGACTTCTA 816
|||||| || |||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct 860 TTCTTTATGGTTGTGGTTCAGCTGTGTTTCTTGTTGTGACGGTGATCCTGGAGACTTCTA 919
Query 817 ATTTCCAGCCAATAAGTTTAGATTTGATCCCGTTACAACTTATGTGTTTTCCAATTTGTA 876
|||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||
Sbjct 920 ATTTCCAGCCAATAAGTTTAGATTTGATCCTGTTACAACTTATGTGTTCTCAAATTTCTA 979
Query 877 TTTTTGTTATAATAAACAGTTATTAATACACATAACGGTCC 917
||||||||| ||||||||||||||||||||||| | |||||
Sbjct 980 TTTTTGTTACAATAAACAGTTATTAATACACATCATGGTCC 1020
Score = 422 bits (228), Expect = 4e-117
Identities = 264/281 (94%), Gaps = 4/281 (1%)
Strand=Plus/Plus
Query 30 TACGCATTTGAAGAAAGAAAAATGGCGTCCAACCAACAGAGCTACAAGGCTGGTGAAACC 89
||| ||||||||||||| ||||||| |||||||||||||||||||| |||||||| |||
Sbjct 69 TACACATTTGAAGAAAG--AAATGGCATCCAACCAACAGAGCTACAAAGCTGGTGAGACC 126
Query 90 AGAGGCAAGGCCCAGGAGAAGACTGGACAAGCTATGGGAACGATGAGGGACAAGGCTGAG 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 AGAGGCAAGGCCCAGGAGAAGACTGGACAAGCTATGGGAACGATGAGGGACAAGGCTGAG 186
Query 150 GAGGGCAGGGACAAGACTTCTCAAACGGCCCAAACAGCCCAACAAAAGGCCCATGAGACA 209
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 187 GAGGGCCGGGACAAGACTTCTCAAACGGCCCAAACAGCCCAACAGAAGGCCCATGAGACA 246
Query 210 GCCCAGTCAGCTAAAGATAAGACATCTCAAACTGCCCAAACGGCTCAGCAGAAGGCCCAT 269
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 247 GCCCAGTCAGCTAAAGATAAGACATCTCAAACTGCCCAAGCGGCTCAGCAGAAGGCCCAT 306
Query 270 GATACGACTCAAG-CAGCAAAAGACAAGACATCCCAAGCTG 309
|| ||| | || | |||||||||| |||||||| ||| |||
Sbjct 307 GAAACGGCCCA-GTCAGCAAAAGAGAAGACATCTCAAACTG 346
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44808859124
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5