BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479022
Length=910
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15680.1 | Symbols: | Ran BP2/NZF zinc finger-like superfam... 1471 0.0
> AT3G15680.1 | Symbols: | Ran BP2/NZF zinc finger-like superfamily
protein | chr3:5315001-5316466 FORWARD LENGTH=916
Length=916
Score = 1471 bits (796), Expect = 0.0
Identities = 876/914 (96%), Gaps = 7/914 (1%)
Strand=Plus/Plus
Query 1 CATCACTCTTTCAAAGCCTTGTGTCTTGATTTCTTTCACTAAACTCATATAATCACATAC 60
||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 4 CATCACTCTTTCAAAGCCTCGTGTCTTGATTTCTTTCACCAAACTCATATAATCACATAT 63
Query 61 CTCTCCAAGTTCATCAAGAAAATAATATAAACGCACGCATACAAGCACTGAAGAATGAAC 120
|||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||| |
Sbjct 64 CTCTCCAAGTTCATCAAGAAAATAATATAAACACACACATACAAGAACTGAAGAATGAGC 123
Query 121 AGACCCGGAGATTGGAACTGCAGGTCATGCAACCACCTCAACTTCCAGCGCCGTGACTCT 180
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 124 AGACCCGGAGATTGGAACTGCAGGTCATGCAGCCATCTCAACTTCCAGCGCCGTGACTCT 183
Query 181 TGCCAGCGATGCGGTGACTCTCGTTCCGGCCCTGGTGGAGTCGGTGGCTTAGACTTCGGT 240
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||
Sbjct 184 TGCCAGCGATGCGGTGACTCTCGTTCCGGCCCCGGTGGAGTTGGTGGCTTAGACTTTGGT 243
Query 241 GGTTTCGGCGGCAGAGCCATGTCTGCTTTCGGATTCACCACCGGCTCCGACGTTCGTCCC 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 AATTTCGGTGGCAGAGCCATGTCTGCTTTCGGATTCACCACCGGCTCCGACGTTCGTCCC 303
Query 301 GGTGATTGGTACTGCACCGTCGGAAACTGCGGGACACACAACTTCGCCAGTCGCTCCACT 360
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 304 GGTGATTGGTACTGCACCGTGGGAAACTGCGGGACACACAACTTCGCCAGTCGCTCCACC 363
Query 361 TGCTTCAAATGCGGCACTTTCAAGGACGAGACCGGCGCTGGAGGCGGAGGCGGTGGCATC 420
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 364 TGCTTCAAATGCGGCACTTTCAAGGACGAGACCGGCGCTGGAGGCGGAGGTGGTGGCATC 423
Query 421 GGTGGTCCGGCTATGTTTGACGCAGACGTTATGCGGTCTAGAGTCCCCGGTAACGGTGGT 480
|| |||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 424 GGCGGTCCGGCCATGTTTGACGCCGACATTATGCGGTCTAGAGTCCCCGGTAACGGTGGT 483
Query 481 CGCTCCAGCTGGAAATCCGGCGACTGGATTTGCACTAGGATTGGTTGCAATGAGCATAAC 540
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 CGCTCTAGCTGGAAATCCGGCGACTGGATTTGCACTAGGATTGGTTGCAATGAGCATAAC 543
Query 541 TTTGCAAGCAGAATAGAATGCTTCAGATGCAATGCACCAAGGGACTTCAGCAACAGAACC 600
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 544 TTTGCAAGCAGAATGGAATGCTTCAGGTGCAATGCACCAAGGGACTTCAGCAACAGAACC 603
Query 601 TCTTCCTAAGTTATACAAAATGCTTTTGAAGTAGCCTTGTCTCCAATTTCTTAGGCACCG 660
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 604 TCTTTCTAAGTTATACAAACTGCTTTTGAAGTAGCCTTGTCTCCAATTTCTTAGGCACCG 663
Query 661 TTTGGATCAATGGAAAGGAGAAGCAGGAGC-AAA-AGAGAACTAAAAGATGATAATTTTG 718
||| |||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||
Sbjct 664 TTTCGATCAATGGAAAGGAGAAGCAGGAGCAAAAGAGAGAATTAAAAGATGATAATTTTG 723
Query 719 TTAGATGTTGCAATGAGAGCCAATATTGTAACTTTAGCTGTCGTGCttttggatgtatta 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 TTAGATGTTGCAATGAGAGCCAATATTGTAACTTTAGCTGTCGTGCTTTTGGATGTATTA 783
Query 779 tccatttttattat-atttcttttc-ttttcttttccttaattcgtaatttttcttttgc 836
||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||
Sbjct 784 TCCATTTTTATTAAGATTTCTTTTCATTTTCT---CCTTAATTCGTAATTTTTCTTTTGC 840
Query 837 agtttctttttaagagttttattattctAATGATTGTACGCTGCATGTCTTTCTTAAAAG 896
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 841 AGTTTCTTTTTAAGAGTTTTATTATTCTAATCATTGTACGCTGCATGTCTTTCTTAAAAG 900
Query 897 AAGATTCTCTTCTC 910
||||||||||||||
Sbjct 901 AAGATTCTCTTCTC 914
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44457220095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5