BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479023
Length=1140
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15690.2 | Symbols: | Single hybrid motif superfamily prote... 1759 0.0
> AT3G15690.2 | Symbols: | Single hybrid motif superfamily protein
| chr3:5316916-5319613 FORWARD LENGTH=1162
Length=1162
Score = 1759 bits (952), Expect = 0.0
Identities = 1099/1164 (94%), Gaps = 33/1164 (3%)
Strand=Plus/Plus
Query 1 CACTCTGGTTGTATCGAACGAGCGAAACCCAACCAACGACGAGCGTTAACCTCAAA-ATT 59
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 3 CACTCTGGTTGTATCGAACGAGCGAAACCCAACCAACGACGAGCGTTCACCTCAAATATT 62
Query 60 TTGATTTG-----ATCATCTCCACACTCGTCAAATCG-TGTGTCCTCGTTCGTATCGTTA 113
|||||||| |||||||||||||||| ||||||| ||||||||||||| ||||||||
Sbjct 63 TTGATTTGATCAAATCATCTCCACACTCGCCAAATCGTTGTGTCCTCGTTCATATCGTTA 122
Query 114 TCGTATCAG---------------CTCT-TTCCTTACATTCTTCTGTTTCTCGAATCATT 157
||||||||| |||| |||||||||||||||||||||||||||| ||
Sbjct 123 TCGTATCAGCTCAAAAATCTCAATCTCTCTTCCTTACATTCTTCTGTTTCTCGAATCCTT 182
Query 158 GTCTCCCTCCATGGCTTCCTGTAGCCTAGGAGTTCCTAAAATTAAAATCTCAGCAGTAGA 217
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 183 GTCTCCCTCCATGGCTTCCTGTAGCCTAGGAGTTCCTAAAATTAAAATCTCGGCAGTAGA 242
Query 218 CCTTAGTAGAGTAAGATCTGGAAGCTTACTGATACCATACAATCAAAAATCATTGCTTCG 277
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 243 CCTTAGTAGAGTAAGATCTGGAAGCTTACTGATACCATACAATCAAAGATCATTGCTTCG 302
Query 278 GCAAAGGCCGGTGAAGTACTTGAGTCTGAGGACAACGTTTGGATCTGTGAAAGCTGTCCA 337
|||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 303 ACAAAGGCCAGTGAAGTACTTGAGTCTGAAGACAACATTTGGATCTGTGAAAGCTGTCCA 362
Query 338 AGTGTCTACTGTCCCAACTGCAGAAACATCAGCTACTATAGAAGTAAAAGATTCTGAAGA 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 363 AGTGTCTACTGTCCCAACTGCAGAAACATCAGCTACTATAGAAGTAAAAGATTCTAAAGA 422
Query 398 GACCAAGTCATCTCGATTGAACGCTCAGCTCGTTCCCAAGCCCTCTGAGGTGGAAGCCCT 457
|| ||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||
Sbjct 423 GATCAAGTCATCTCGATTAAACGCTCAGCTTGTTCCCAAGCCTTCTGAGGTGGAAGCCCT 482
Query 458 TGTCACTGAAATATGCGATTCTTCATCAATTGCAGAGTTTGAACTGAAACTGGGGGGTTT 517
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 TGTAACTGAAATATGCGATTCTTCATCAATTGCAGAGTTTGAACTGAAACTGGGGGGTTT 542
Query 518 CCGACTATATGTAGCAAGGAACATAGCTGACAATAGTAGTCCACAACCTCCGCCAACTCC 577
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 543 CCGACTATATGTAGCAAGGAACATAGCTGACAATAGTAGTCTACAACCTCCGCCAACTCC 602
Query 578 TGCTGTAG-CTGCTTCAAATGCAACTACCGAGAGTCCTGATTTGAATGGATCAGCTTCCT 636
|||||| | ||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 603 TGCTGT-GACTGCTTCAAATGCAACTACCGAGAGTCCTGAGTCGAATGGATCAGCTTCCT 661
Query 637 CTACTTCACTGGCTATCTCAAAACCAGCATCGTCAGCCGCTGATCAGGGTTTGATGATTC 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 CTACTTCACTGGCTATCTCAAAACCAGCATCGTCAGCCGCTGATCAGGGTTTGATGATTC 721
Query 697 TCCAATCTCCAAAAGTAGGGTTCTTCAGGAGATCCAAAACCATAAAGGGTAAACGCCTGC 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 TCCAATCTCCAAAAGTAGGGTTCTTCAGGAGATCCAAAACCATAAAGGGTAAACGCCTGC 781
Query 757 CTTCGTCTTGTAAAGAGAAAGACCAAGTGAAAGAAGGTCAAATTCTGTGCTACATTGAAC 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 CTTCGTCTTGTAAAGAGAAAGACCAAGTGAAAGAAGGTCAAATTCTGTGCTACATTGAAC 841
Query 817 AACTCGGTGGCCAATTTCCAATCGAGGCCGATGTTACCGGCGAGGTAGTCAAAATACTCC 876
|||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||
Sbjct 842 AACTCGGTGGCCAATTTCCAATCGAGTCTGATGTTACCGGCGAGGTAGTCAAGATACTCC 901
Query 877 GAGAAGATGGAGAGCCTGTAGGATACAATGATGCTCTCATCTCCATCCTTCCATCCTTTC 936
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 902 GAGAAGATGGAGAGCCTGTAGGATACAATGATGCTCTCATCTCCATCCTTCCATCCTTCC 961
Query 937 CGGGGATCAAGAAGCTTCAGTAAAACCAAATTCGAGCTGGTTTTGAGTTATGATAATGTT 996
| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 962 CTGGGATCAAGAAGCTTCAGTAAAACCAAATTCGAGCTGGTTTTGAGTTATGACACTGTG 1021
Query 997 CCTTGTGTATGCTTTTAGACAAAGAAACTTCATTCATATTTGTATTATGTTTCTCTTTTG 1056
||||||||||||||||||| |||||||||||||||||||||||||| ||| || ||| |
Sbjct 1022 CCTTGTGTATGCTTTTAGATAAAGAAACTTCATTCATATTTGTATT-TGT--CT-TTT-G 1076
Query 1057 CTTGTATGAAAGTTCTTCCTTAAGACTGCTTT-ATTCTGTATGttttttttttATATATA 1115
|||||||||||||||||| |||||||| |||| |||||||||| ||||| || |||||||
Sbjct 1077 CTTGTATGAAAGTTCTTCTTTAAGACT-CTTTTATTCTGTATGCTTTTTCTT-ATATATA 1134
Query 1116 AAAACATTATGGTAGttttttttA 1139
|||||||||||||| |||||||||
Sbjct 1135 AAAACATTATGGTATTTTTTTTTA 1158
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55923407130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5