BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479026
Length=817
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15710.1 | Symbols: | Peptidase S24/S26A/S26B/S26C family p... 1142 0.0
AT1G52600.1 | Symbols: | Peptidase S24/S26A/S26B/S26C family p... 510 7e-144
> AT3G15710.1 | Symbols: | Peptidase S24/S26A/S26B/S26C family
protein | chr3:5323358-5324908 REVERSE LENGTH=872
Length=872
Score = 1142 bits (618), Expect = 0.0
Identities = 756/818 (92%), Gaps = 27/818 (3%)
Strand=Plus/Plus
Query 1 AAATCAAATCTGTGTATCTTTCTCTTCTCCACTGAAACGCGTTTGAAGGAGAAGGGTCAA 60
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 5 AAATCAAATCTGTGTTTCATTCTCTTCTCCACTGAAACGCGTTTGAAGGAGAAGGGTCAA 64
Query 61 AGGGATCTGATTCAATCA-TTT---T-GG-----CTA-GAAATTGAAGGAAGAA-GAATC 108
||||||||||| | |||| ||| | || | | ||||| |||||||||| ||||
Sbjct 65 AGGGATCTGATCCTATCACTTTCGCTGGGAAAAAC-ACGAAATCGAAGGAAGAATCAATC 123
Query 109 ATGGGTTTCATTGGAGAAACTGTAGATTCCATTAAATCTATCAAGATCCGTC-AGCTTCT 167
||||||||||| |||||||||||||||||||| ||||||||||||||||||| || ||||
Sbjct 124 ATGGGTTTCATCGGAGAAACTGTAGATTCCATCAAATCTATCAAGATCCGTCAAG-TTCT 182
Query 168 CACTCAGGCTATCACTCTCGGTATGATCGTTACATCTGCATTGATAATTTGGAAGGCATT 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 CACTCAGGCTATCACTCTCGGTATGATCGTTACATCTGCATTGATAATTTGGAAGGCATT 242
Query 228 GATATGTGTCACTGGCAGTGAATCACCTGTGGTTGTTGTTCTCTCAGAAAGCATGGAACC 287
||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 243 GATATGTGTCACTGGCAGTGAATCACCAGTGGTTGTTGTTCTCTCTGAAAGTATGGAACC 302
Query 288 TGGCTTTCAGAGAGGGGATATATTGTTCTTGCGGATGACCGATGAGCCTATTCGAGCAGG 347
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 303 TGGCTTTCAGAGAGGAGATATATTGTTCTTGCGGATGACTGATGAGCCTATTCGAGCAGG 362
Query 348 CGAGATTGTTGTTTTTAGTGTTGATGGTCGTGAAATTCCCATTGTTCATCGAGCAATCAA 407
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 CGAGATTGTTGTGTTCAGTGTTGATGGTCGTGAAATTCCCATTGTTCATCGAGCAATCAA 422
Query 408 AGTTCATGAGAGGGGAGATACTAAAGAAGTTGATGTTCTAACAAAAGGTGACAACAATGA 467
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 423 AGTTCATGAGAGAGGAGATACTAAAGCAGTTGATGTTCTAACAAAAGGTGACAACAATGA 482
Query 468 CATTGATGACATTGGTCTCTATGCGGAAGGACAACTTTGGCTTCATAGGCACCATATCAT 527
|||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||||||
Sbjct 483 CATTGATGACATTGGTCTCTATGCTGAAGGACAGCTTTGGCTTCACAGGCATCATATCAT 542
Query 528 GGGCAGAGCTGTTGGGTTCCTGCCTTATGTTGGATGGGTGACTATTATCATGACAGAAAA 587
||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 543 GGGCAGAGCTGTTGGATTCTTGCCTTATGTTGGATGGGTTACTATTATCATGACAGAAAA 602
Query 588 GCCTATCATCAAGTATATACTCATTGGTGCATTGGGTTTGCTCGTTATAACATCCAAAGA 647
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 603 GCCTATCATCAAGTATATACTCATTGGTGCATTGGGTTTGCTCGTTATAACATCGAAAGA 662
Query 648 CTAAGACTACaaaaaaaGAGCTGGTCTTTGGTAAAGAAGTAGCTTCTGCAACGCTCGGTT 707
||||||||||| || ||| |||||| ||||||| || |||||||||||||||||||| |
Sbjct 663 CTAAGACTACATAACAAG--CTGGTCGTTGGTAAGGAGGTAGCTTCTGCAACGCTCGGGT 720
Query 708 CATCATCTTTCGGT-G--A-C-T-TTT-AAACTGTAGAATCATATAAACCTCAATTTATA 760
|||||||||| | | | | | | ||| |||||||||||||||||||||||||| |||||
Sbjct 721 CATCATCTTT-G-TAGCCATCATCTTTGAAACTGTAGAATCATATAAACCTCAACTTATA 778
Query 761 ATTATAAACACTTTTCTCTTTAAAACAGCTACGGtttt 798
|||||| |||||||| |||||||| |||||||| ||||
Sbjct 779 ATTATAGACACTTTTATCTTTAAATCAGCTACG-TTTT 815
> AT1G52600.1 | Symbols: | Peptidase S24/S26A/S26B/S26C family
protein | chr1:19590487-19592695 FORWARD LENGTH=877
Length=877
Score = 510 bits (276), Expect = 7e-144
Identities = 456/543 (84%), Gaps = 11/543 (2%)
Strand=Plus/Plus
Query 109 ATGGGTTTCATTGGAGAAACTGTAGATTCCATTAAATCTA-TCAAGATCCGTCAGCTTCT 167
||||||| || ||||||||||||||||| || ||||||| || |||| ||||||||| |
Sbjct 126 ATGGGTTGGATCGGAGAAACTGTAGATTCTATCAAATCTATTC-AGATTCGTCAGCTTTT 184
Query 168 CACTCAGGCTATCACTCTCGGTATGATCGTTACATCTGCATTGATAATTTGGAAGGCATT 227
||||||||| |||| ||| || ||||| || |||||||| ||||| || ||||| || ||
Sbjct 185 CACTCAGGCCATCAGTCTAGGGATGATTGTCACATCTGCTTTGATCATATGGAAAGCTTT 244
Query 228 GATATGTGTCACTGGCAGTGAATCACCTGTGGTTGTTGTTCTCTCAGAAAGCATGGAACC 287
||| ||||||||||| || ||||| || ||||| ||||||||||| | ||||||||||||
Sbjct 245 GATGTGTGTCACTGGAAGCGAATCTCCGGTGGTGGTTGTTCTCTCTGGAAGCATGGAACC 304
Query 288 TGGCTTTCAGAGAGGGGATATATTGTTCTTGCGGATGACCGATGAGCCTATTCGAGCAGG 347
|| ||| |||| ||||||||||||||||||| |||| | || || |||||||||||
Sbjct 305 CGGTTTTAAGAGGGGGGATATATTGTTCTTGCACATGAGTAAAGACCCGATTCGAGCAGG 364
Query 348 CGAGATTGTTGTTTTTAGTGTTGATGGTCGTGAAATTCCCATTGTTCATCGAG-CAATCA 406
|| ||||||||||| | ||||||||||||||| ||||||||||| ||||| | | || |
Sbjct 365 TGAAATTGTTGTTTTCAATGTTGATGGTCGTGATATTCCCATTGTCCATCGTGTC-ATTA 423
Query 407 AAGTTCATGAGAGGGGAGATACTA-AAGAAGTTGATGTTCTAACAAAAGGTGACAACAA- 464
| ||||| || |||| | |||| | |||||||||||||||||| ||||||||||| ||
Sbjct 424 AGGTTCACGAAAGGGAAAATAC-AGGAGAAGTTGATGTTCTAACGAAAGGTGACAATAAC 482
Query 465 TGACATTGATGACATTGGTCTCTATGCGGAAGGACAACTTTGGCTTCATAGGCACCATAT 524
| | ||||||| ||| ||||| |||||||| |||||||||||| | || |||||
Sbjct 483 T-ATGGAGATGACAGACTTCTGTATGCTGAAGGACAGCTTTGGCTTCATCGACATCATAT 541
Query 525 CATGGG-CAGAGCTGTTGGGTTCCTGCCTTATGTTGGATGGGTGACTATTATCATGACAG 583
||||| | | ||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 542 AATGGGTC-GTGCTGTCGGGTTCTTGCCTTATGTTGGATGGGTGACTATTATCATGACAG 600
Query 584 AAAAGCCTATCATCAAGTATATACTCATTGGTGCATTGGGTTTGCTCGTTATAACATCCA 643
|||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| || |
Sbjct 601 AAAAGCCTATCATCAAGTATATTCTCATAGGTGCATTGGGTTTACTCGTTATAACGTC-A 659
Query 644 AAG 646
|||
Sbjct 660 AAG 662
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39785444424
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5