BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479028
Length=1441
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15720.1 | Symbols: | Pectin lyase-like superfamily protein... 2097 0.0
> AT3G15720.1 | Symbols: | Pectin lyase-like superfamily protein
| chr3:5325290-5327537 REVERSE LENGTH=1490
Length=1490
Score = 2097 bits (1135), Expect = 0.0
Identities = 1344/1445 (93%), Gaps = 14/1445 (1%)
Strand=Plus/Plus
Query 1 AAAGCCTTAGCTTCAACAACATTTTTTCTTTTAGTTGTAAAC--A-T-ATTCATGA-TTT 55
|||||||| ||||||||||||||||||| |||||| |||||| | | |||||||| |||
Sbjct 1 AAAGCCTTCGCTTCAACAACATTTTTTC-TTTAGTCGTAAACATATTCATTCATGATTTT 59
Query 56 GACTCTTTTTCTCCAAAATATATGAAGAAGAAGACCTGGTTCTTGAATTTCTCACTGTTC 115
|| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 60 AACGCTTTTTCTTCAAAATATATGAAGAAGAAGACTTGGTTCTTGAATTTCTCACTGTTC 119
Query 116 ATTCTCCAAATCTTCACATTTTCAAATGCATTGGATGTTACTCAATTAGGAGCGATTGGT 175
|||| ||||||||||||| ||| ||||||||||||||||||||||| |||||| ||||
Sbjct 120 TTTCTTCAAATCTTCACATCTTCGAATGCATTGGATGTTACTCAATTCGGAGCGGTTGGA 179
Query 176 GATGGAGTTACAGACGATTCGCAGGCGTTCTTGAAAGCTTGGGAAGCTGTCTGTAGCGGA 235
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 180 GATGGAGTTACAGACGATTCACAGGCGTTCTTGAAAGCTTGGGAAGCTGTGTGTAGCGGA 239
Query 236 ACAGGAGATGGGCAGCTTGTCGTTCCGGCAGGGATGACATTTCTGTTACAGCCCCTGAAG 295
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 240 ACAGGAGATGGGCAGTTTGTCGTTCCGGCAGGGATGACATTTATGTTACAGCCCCTGAAG 299
Query 296 TTTCAAGGTTCTTGCAAATCGGCCCCAATTTTTGTTCAGATATTAGGCAATCTGGTTGCA 355
|||||||| ||||||||||| |||| ||||||||||||| |||||||| |||||||||
Sbjct 300 TTTCAAGGGTCTTGCAAATCCACCCCTGTTTTTGTTCAGATGTTAGGCAAGCTGGTTGCA 359
Query 356 TCGAGTAAAGGAAATTGGAAAGGAGACAAAGATCAATGGATTCTTTTTACAGACATTGAA 415
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 360 CCGAGTAAAGGAAATTGGAAAGGGGACAAAGATCAATGGATTCTTTTTACAGACATTGAA 419
Query 416 GGACTTGTGATTGAAGGTGGCGGTGAAATCAATGGCCAGGGTTCGAGTTGGTGGGAACAC 475
||||||||||||||||||| ||||||||| || |||||||||||||| ||||||||||||
Sbjct 420 GGACTTGTGATTGAAGGTGACGGTGAAATTAACGGCCAGGGTTCGAGCTGGTGGGAACAC 479
Query 476 AAAGGCTCAAGACCTACCGCGTTGAAGTTCAAGAGCTGCAACAACCTTAGATTGAGTGGG 535
|||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 480 AAAGGCTCTAGACCTACCGCATTGAAGTTCAGGAGCTGCAACAACCTTAGATTGAGTGGG 539
Query 536 TTAACGCATGTAGATAGTCCAATGGCTCACATTCACATAAACGATTGCAACTATGTGACC 595
||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 540 TTAACGCATTTAGATAGTCCAATGGCTCACATTCACATAAGCGAGTGCAACTATGTGACC 599
Query 596 ATCTCAAGTCTACGGATAAATGCGCCGGAATCAAGTCCTAATACTGATGGAATCGACGTA 655
|||||||| ||||| |||||||| || |||||||||||||| || |||||||||||||||
Sbjct 600 ATCTCAAGCCTACGAATAAATGCACCTGAATCAAGTCCTAACACCGATGGAATCGACGTA 659
Query 656 GGCTCTTCATCCAACGTTGTCATCCAGGATTGCGTCATCGGAACCGGTGATGATTGCATT 715
|| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 660 GGGGCTTCATCCAACGTTGTCATCCAGGATTGCATCATCGCAACCGGTGATGATTGCATT 719
Query 716 GCGATTAATTCGGGGACGTCTAACATCCGGATTTCCGGTATAGATTGCGGACCAGGCCAT 775
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 720 GCGATTAATTCGGGGACGTCTAACATCCACATTTCCGGTATAGATTGCGGACCAGGCCAT 779
Query 776 GGAATAAGCATAGGAAGCTTGGGAAAAGATGGGGAGACAGCTACAGTGGAGAATGTATGT 835
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 780 GGGATAAGCATAGGAAGCTTGGGAAAAGATGGAGAGACAGCTACAGTGGAGAATGTATGT 839
Query 836 GTCCAAAACTGTAACTTTAGAGGAACTACT-AATGGTGCTCGGATCAAAACCTGGCAGGG 894
|||||||||||||||||||||||||||| | ||||| |||||||||||||| ||||||||
Sbjct 840 GTCCAAAACTGTAACTTTAGAGGAACTA-TGAATGGAGCTCGGATCAAAACTTGGCAGGG 898
Query 895 CGGATCGGGTTACGCGAGGATGATTACCTTCAATGGAATTACTCTAGATAATGTTGAAAA 954
|||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||
Sbjct 899 CGGATCGGGTTACGCGAGAATGATTACTTTCAATGGAATTACTCTAGACAATGTTGAAAA 958
Query 955 TCCAATCATAATCGATCAGCTCTATAACGGTGGAGATTCTGATAAAGCCAAAGATCATAA 1014
||||||||||||||||||| ||||||||||||| ||||| ||||| |||||||||| |||
Sbjct 959 TCCAATCATAATCGATCAGTTCTATAACGGTGGCGATTCCGATAATGCCAAAGATCGTAA 1018
Query 1015 GTCGTCGGCAGTGGAAGTGAGCAAAGTGGTGTATAGCAATTTCATTGGGACGTCGAAGTC 1074
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||
Sbjct 1019 GTCGTCGGCAGTGGAAGTGAGCAAAGTGGTGTTTAGTAATTTCATTGGGACGTCAAAGTC 1078
Query 1075 AGAGTACGGCGTTGACTTCAGATGCAGCGAGACAGTACCATGCACCGAGATTTTCTTGAG 1134
||||||||| ||||||||| |||||||||||| ||| |||||||| ||||||||||||||
Sbjct 1079 AGAGTACGGTGTTGACTTCCGATGCAGCGAGAGAGTTCCATGCACAGAGATTTTCTTGAG 1138
Query 1135 AGACGTGAAAATAGAAACGGCATCATCAGGATCAGGACAAGTCGCACAAGGACAGTGTTT 1194
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 AGACATGAAAATAGAAACGGCATCATCAGGATCAGGACAAGTCGCACAAGGACAGTGTTT 1198
Query 1195 AAACGTGAGAGGTGTGTCCACGCTTGCTGTACCAGGTCTAGAATGCTTAGCCCTTTCCAC 1254
|||||||||||||| ||| || |||||||||||||||||||||| |||| ||||||||
Sbjct 1199 AAACGTGAGAGGTGCGTCTACAATTGCTGTACCAGGTCTAGAATGTTTAGAACTTTCCAC 1258
Query 1255 AGATATGCTGTCATCGGCGCAATTGCCGGAACAAACTTGCATGTTGGCACAGTCAGTGCA 1314
||||||| | |||||||||||||||| ||||||||||||||||| |||||| ||||||||
Sbjct 1259 AGATATGTTTTCATCGGCGCAATTGCTGGAACAAACTTGCATGTCGGCACAATCAGTGCA 1318
Query 1315 ACCAAGAACAACA-CA-A-CCGATGCAAGATCCAATATGGGATTTTGAAAGCAGAGGGAA 1371
||||||||||||| || | |||||||||||||||||||||| |||| |||||||||||||
Sbjct 1319 ACCAAGAACAACAACACAACCGATGCAAGATCCAATATGGGTTTTTCAAAGCAGAGGGAA 1378
Query 1372 ACGACTTAGAGTTTACAAT---GCCGTATTAGTTTCATTTGTCTCTTTGGTTACGTATAT 1428
|| |||||||||||||||| ||| |||||||||||||| ||||||||||||| |||||
Sbjct 1379 ACAACTTAGAGTTTACAATATTGCCATATTAGTTTCATTTATCTCTTTGGTTACATATAT 1438
Query 1429 TTTAG 1433
|||||
Sbjct 1439 TTTAG 1443
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71033771175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5