BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479030
Length=640
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15770.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 869 0.0
> AT3G15770.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G25360.2);
Has 143 Blast hits to 143 proteins in 25 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 136; Viruses
- 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr3:5340098-5341339
FORWARD LENGTH=757
Length=757
Score = 869 bits (470), Expect = 0.0
Identities = 592/647 (91%), Gaps = 24/647 (4%)
Strand=Plus/Plus
Query 1 AAAAAGAAATCGtcttttcctttcactttcttcttcttcttcCGACTGGGTCTTTGTTGA 60
|||||||||||||| ||||| || || |||| ||||||||||| |||||||||| | |
Sbjct 10 AAAAAGAAATCGTC-TTTCC-TT---TTACTTC-TCTTCTTCCGATTGGGTCTTTGATCA 63
Query 61 TTTCACTCGAA--GATTGATAAGTTTTGTTGGG-TGGTGCTCGATTCTTCGTTTGATGAT 117
|||| | | || |||||||||||||||||||| || | ||||||||||||||||||||
Sbjct 64 TTTC-C-CCAATCGATTGATAAGTTTTGTTGGGTTGCT-TTCGATTCTTCGTTTGATGAT 120
Query 118 CTAAGAAGGGCTCTGTTTTTTCCACGATGGGCAGTAGTTGTTTGGCTTGTTTTGATAAGT 177
||||||| | ||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTAAGAAAGTCTCTG-TCTTTCCACGATGGGCAGTAGTTGTTTGGCTTGTTTTGATAAGT 179
Query 178 CGAAAGCAACAACAAGTGTAGATGTAGATGTGCCTTTGAATGGCTCAAAAGACGTGTTAG 237
||||||||| ||| | || |||||||||||||||||||||| ||||||| |||||||
Sbjct 180 CGAAAGCAAAAAC-A----AG-TGTAGATGTGCCTTTGAATGGCACAAAAGATGTGTTAG 233
Query 238 TAGAAGAAGATTGGAGTGAATTGAGGAATCCTA--GT-GTAGCTTCTGAAGATTTCTGGA 294
|||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||
Sbjct 234 TAGAAGAAGATTGGAGTGAATTGAGGAAGCCTAGTGTAGTAGCTTCTGAAGATTTCTGGA 293
Query 295 CTAATACCACTTTAGATATGGAAAGCAATGCTCAGGGAAGTGTTTCTTCAATCAGTACAA 354
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 294 CTAATACCACTTTAGATATGGAAAGCAATGCTCACGGAAGTGTTTCTTCAATCAGTACAA 353
Query 355 CGAATCTGACTGTTGATTCTCAAGGATGTGGTTCCAGCTCTAATGAACCTGCTGAATTTG 414
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 CCAATCTGACTATTGATTCTCAAGGATGTGGTTCCAGCTCTAATGAACCTGCTGAATTTG 413
Query 415 TTAACCATGGTCTTCTGCTATGGAATCAAACTCGGCAGCAATGGGTGGGGGATAAAAAAT 474
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 414 TTAACCATGGTCTTGTGCTATGGAATCAAACTCGGCAGCAATGGGTGGGAGATAAAAGAT 473
Query 475 CCGATAGCCGCGAAAAAA-TTGTTCGAGAACCGTTTATAAATGAGAATGTGACTTATGAG 533
|||| ||||| |||| ||| |||||||||| || |||||||||||||||||||||||
Sbjct 474 CCGAGAGCCGT-AAAAGCGTTGGTCGAGAACCGATTCTAAATGAGAATGTGACTTATGAG 532
Query 534 AGTCTACTTGGGAGCAACAAGCGGTTTCCAAGGCCTATACCTCTTGATGAAATGGTGCAG 593
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 533 AGTCTACTTGGGAGCAACAAGCGATTTCCGAGGCCTATACCTCTTGATGAAATGGTGCAG 592
Query 594 TTTCTTGTTGAAGTTTGGGAAGAAGAGGGTCTATACGGCTGAAAGAT 640
|||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 593 TTTCTTGTTGAAGTTTGGGAAGAAGAAGGTCTATACGGCTAAAAGAT 639
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30894000405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5