BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479040
Length=1314
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15850.1 | Symbols: FAD5, FADB, JB67, ADS3 | fatty acid desa... 1958 0.0
> AT3G15850.1 | Symbols: FAD5, FADB, JB67, ADS3 | fatty acid desaturase
5 | chr3:5359009-5361185 FORWARD LENGTH=1381
Length=1381
Score = 1958 bits (1060), Expect = 0.0
Identities = 1267/1358 (93%), Gaps = 49/1358 (4%)
Strand=Plus/Plus
Query 1 TAAGGGTTTAAGTCTCTTCTCTT--GGC-TTCTCTTAGCCATCACATCGATAATGGCTTC 57
|||||||||||| |||||||||| | |||||||||||||||||||||||||||||||
Sbjct 27 TAAGGGTTTAAGCCTCTTCTCTTCCTTCTTTCTCTTAGCCATCACATCGATAATGGCTTC 86
Query 58 TCTTTTAACAAAACCCAAAGCCC-TTTTCCTCTGTTCACCATCGTTATCTCCACGAACTT 116
|||| |||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||
Sbjct 87 TCTTCTAACAAAACCCAAA-CCCGTTTTCCTCTGTTCACCATCGTTATCTCCAAGAACTT 145
Query 117 TGAACACATCAACACCGTCATTGAATTTCACCAGAATTTCATTCACCCACCACCAAAAGC 176
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 146 TGAACACAGCAACACCGTCATTGAATTTCACCAGAATTTCATTCACCCATCACCAAAAGC 205
Query 177 TTGCTCCTTTCAAGCCTCCAAGTCTCGTTGTTGCATTCTCTGAGAAGGGTTTGAAGAGAG 236
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 206 TTGCTCCTTTCAAGCCTCCTAGTCTCGTTGTTGCATTCTCTGAAAAGGGTTTGAAGAGAG 265
Query 237 ATGTCACCACAGCTGCTGCTGCGACGGAGGGAGATTACAGAAGGATAATGCTATCGGATG 296
||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||
Sbjct 266 ATGTCACCACAGCTGCTGCAGCGACGGAGGGAGATTACAGAAGGATAATGTTATCTGATG 325
Query 297 TGTTGGTGAAGAAGAAGGAAAAAGTAGTTTGGTGGGAGAGGGAATGGAAAGCGATGGATT 356
|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
Sbjct 326 TGTTGGTGAAGAAGAAGGAAAAAGTAGTTTGGTGGGAGAGAGAATGGAAAGCTATGGACT 385
Query 357 TTGGAGCTGTTGCTGTGGTTTTGTCTATGCATTTGCTTAGTCTTTTGGCTCCGTTTCAGT 416
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 386 TTGGAGCTGTTGCTGTCGTTTTGTCTATGCATTTGCTTAGTCTTTTGGCTCCGTTTCAAT 445
Query 417 TCAATTGGAGAGCTGTTTCGGTTGCTTTTGGGCTTTATATCGTTACAGGTCTTTTGGGTA 476
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 446 TCAATTGGAGAGCTGTTTCGGTTGCTTTTGGGCTTTATATCGTTACAGGTCTTCTGGGGA 505
Query 477 TTACTCTGTCTTTCCATAGGAATCTTTCTCATAAGGCTTTCAAGCTTCCCAAATGGCTTG 536
|||||||||||||||||||||||||||||||||| || |||||||| || ||||||||||
Sbjct 506 TTACTCTGTCTTTCCATAGGAATCTTTCTCATAAAGCCTTCAAGCTACCTAAATGGCTTG 565
Query 537 AGTACTTGTTTGCTTATTGTGGAGCTCAAGCTCTTCAGGGAAACCCAATTGATTGGGTGA 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 566 AGTACTTGTTTGCTTATTGTGGAGCTCAAGCTCTTCAGGGAAACCCAATTGATTGGGTGA 625
Query 597 GTACACATAGGTATCATCATCAGTTTTGTGATTCAGACAGAGACCCTCATAGTCCACTTG 656
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 626 GTACACATAGGTACCATCATCAGTTTTGTGATTCAGACAGAGACCCTCATAGCCCACTTG 685
Query 657 ATGGGTTTTGGTTCAGTCATATGAATTGGATGTTTGATACCAATACAATCACCCAAAGGT 716
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 686 ATGGGTTTTGGTTCAGTCACATGAATTGGATGTTTGATACCAATACAATCACCCAAAGGT 745
Query 717 GTGGAGAGCCTAATAATGTTGGGGATTTGGAGAAGCAACCATTCTATCAATTCCTTCGAA 776
||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||
Sbjct 746 GTGGAGAGCCTAATAATGTTGGGGACTTGGAGAAGCAGCCATTCTATCGATTCCTTCGAA 805
Query 777 CCACCTACATTTTGCATCCGGTGGCTCTAGCGGTTGCTCTATACGCAATGGGTGGCTTCC 836
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
Sbjct 806 CCACCTACATTTTGCATCCGCTGGCTCTAGCGGTTGCTTTATACGCAATGGGTGGCTTTC 865
Query 837 CATTCATCGTTTGGGGAATGGGTGTAAGAATAGTATGGGTGTATCATATAACTTGGCTAG 896
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 866 CATTCATCGTTTGGGGAATGGGTGTAAGAATAGTATGGGTATATCATATAACTTGGCTAG 925
Query 897 TGAACTCAGCTTGTCATGTATGGGGAAAACAAGCATGGAACACAGGCGATTTGTCTAAGA 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 926 TGAACTCAGCTTGTCATGTATGGGGAAAACAAGCATGGAACACAGGCGATTTGTCTAAGA 985
Query 957 ACAACTGGTGGGTAGCAGCTCTAGCATTCGGGGAAGGATGGCACAACAATCATCATGCTT 1016
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 986 ACAACTGGTGGGTAGCAGCTCTAGCATTCGGGGAAGGATGGCACAACAATCACCATGCTT 1045
Query 1017 TTGAGTTCTCAGCTCGACACGGTTTAGAATGGTGGCAACTTGATATGACTTGGTACGTCG 1076
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1046 TTGAGTTCTCAGCTCGACACGGCTTAGAATGGTGGCAACTTGATATGACTTGGTACGTCG 1105
Query 1077 TTAGGTTTCTTCAAGCCATCGGTTTAGCAACCGATGTCAAGCTCCCATCGGAAGCTCAGA 1136
||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1106 TTAAGTTCCTTCAAGCCATCGGTTTAGCAACTGATGTCAAGCTCCCATCGGAAGCTCAGA 1165
Query 1137 AACAAAGAATGGCATTGACCA--G-C-GA-C-T----GA-T-C-----T-TG----AA-- 1172
|||||||||||||||| |||| | | || | | | | | | || ||
Sbjct 1166 AACAAAGAATGGCATTCACCAGCGACTGATCTTAAAAAACTACATGGTTATGCCTAAAGT 1225
Query 1173 -AAAACTGTCGGTACGATTGAAGCTATGAAGGTTTT--AAAA--A-----------TTTT 1216
|||||||||||| |||||||||||||||||||||| |||| | ||||
Sbjct 1226 CAAAACTGTCGGTTCGATTGAAGCTATGAAGGTTTTAAAAAAGGATTTTGTTCTGCTTTT 1285
Query 1217 TTGTGTTTACATAAAGGTATATATCTGTGCAAGAGATTGTATGTGACAAACTGATTATGA 1276
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1286 TTGTGTTTACTTAAAGGTATATATCTGTGCAAGAGATTGTATGTGACAAACTGATTATGA 1345
Query 1277 ATTTTAAATATCTATAATTACATTCAATACAAAAGGAA 1314
|| || ||||||||||||||||||||||||||||||
Sbjct 1346 AT---AA-TATCTATAATTACATTCAATACAAAAGGAA 1379
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64658301960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5