BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479045
Length=1363
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15890.1 | Symbols: | Protein kinase superfamily protein | ... 1991 0.0
> AT3G15890.1 | Symbols: | Protein kinase superfamily protein
| chr3:5374248-5376275 FORWARD LENGTH=1388
Length=1388
Score = 1991 bits (1078), Expect = 0.0
Identities = 1279/1373 (93%), Gaps = 25/1373 (2%)
Strand=Plus/Plus
Query 1 AATCTCACATCGAGACGAAATTAGAGCTACTCAGACTTGTTCTATTACACTGTTACCTTC 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 8 AATCTCACATCGAGACGAAATTAGAGCTACTCAGACTTGTTCTATTAAACTGTTACCTTC 67
Query 61 TCCAGAAAAAGCGTTACCTTTTTATTGTTTGTCCGTACGAGGAAGAATCTAGGAGACAGA 120
|||||| |||||||||||||||| || || |||||||||||||| |||||||||||||||
Sbjct 68 TCCAGACAAAGCGTTACCTTTTT-TT-TTGGTCCGTACGAGGAAAAATCTAGGAGACAGA 125
Query 121 GCTATTTGTGCGAAAGATGCAACTTTTTCATAGCTGTTGTGGAAAAGGATTTGATGGGAA 180
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 126 GCTATTTGTTCGAAAGATGCAACTTTTAAATAGCTGTTGTGGAAAAGGATTTGATGGGAA 185
Query 181 GAAGAAAGAAAAGGAAGAGCCATCTTGGAGGGTATTTTCATTGAAGGAACTTCATGCGGC 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 186 GAAGAAAGAAAAGGAAGAGCCATCTTGGAGGGTATTTTCACTGAAGGAACTTCATGCAGC 245
Query 241 CACTAACAGTTTCAATTATGATAACAAACTCGGTGAAGGCCGATTCGGTAGTGTCTACTG 300
||| |||||||||||||| |||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 246 CACCAACAGTTTCAATTACGATAACAAACTCGGTGAAGGTCGATTTGGTAGTGTCTATTG 305
Query 301 GGGTCAGCTATGGGATGGATCACAGATTGCAGTCAAGAGATTGAAGGAATGGAGTAACAG 360
|||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 306 GGGTCAGCTATGGGATGGCTCACAAATTGCAGTCAAGAGGTTGAAGGAATGGAGTAATAG 365
Query 361 AGAGGAGATTGATTTTGCTGTGGAAGTCGAGATTCTTGCCCGTATTCGTCACAAGAATTT 420
||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 366 AGAAGAGATAGATTTTGCTGTGGAAGTCGAGATTCTTGCTCGTATTCGTCACAAGAATTT 425
Query 421 GTTGAGTGTTCGTGGCTACTGTGCAGAAGGCCAAGAACGTCTTCTTGTGTACGAGTACAT 480
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 426 GTTGAGTGTTCGTGGCTACTGTGCTGAAGGACAAGAACGTCTTCTTGTGTACGAGTACAT 485
Query 481 GCCTAATTTGAGCTTAGTTTCGCATCTTCATGGCCAGCATTCAGCTGAATGCCTTTTAGA 540
|| ||||||||||| ||||| ||||||||||||||||||||||||||||| ||| ||||
Sbjct 486 GCAGAATTTGAGCTTGGTTTCACATCTTCATGGCCAGCATTCAGCTGAATGTCTTCTAGA 545
Query 541 TTGGACCAAGCGGATGAAGATCGCCATAAGCTCTGCTCAGGCTATTGCCTACCTACACGA 600
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 546 TTGGACCAAGCGAATGAAGATCGCCATAAGCTCTGCTCAGGCCATTGCCTACCTACACGA 605
Query 601 CCACGCAACCCCACATATAGTCCATGGAGATGTGAGAGCTAGCAATGTGTTACTAGATTC 660
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 606 CCACGCAACCCCACATATAGTCCATGGAGATGTGAGAGCTAGCAATGTGTTGTTAGACTC 665
Query 661 TGAATTTGAAGCTCGGGTTACAGATTTTGGATATGGTAAGCTGATGCCAGATGAT-A--C 717
||||||||||||||| |||||||||||||| |||||||||||||||||||||||| | |
Sbjct 666 TGAATTTGAAGCTCGCGTTACAGATTTTGGTTATGGTAAGCTGATGCCAGATGATGATAC 725
Query 718 TGGAGATAGAGCTACCAGAGCCAAAAGTAATAATGGATATATCTCACCAGAATGTGTTGC 777
||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 726 TGGAGATGGAGCTACCAAAGCCAAAAGTAATAATGGATATATCTCACCAGAATGTGATGC 785
Query 778 ATCAGGAAAAGAATCAGAAACTAGCGATGTGTACAGTTTCGGTATCCTTTT-ACTGGTAC 836
||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||
Sbjct 786 ATCAGGAAAAGAATCAGAAACTAGCGATGTGTACAGTTTTGGTATCCTTTTGA-TGGTAC 844
Query 837 TGGTTAGTGGCAAGAGACCACTCGAAAGGCTAAATCCAACAACAACGCGAG-GTATAACC 895
||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||
Sbjct 845 TGGTTAGTGGCAAGAGACCACTCGAGAGGCTAAATCCAACAACAACGCG-GTGTATAACA 903
Query 896 GAGTGGGTTTTACCACTTGTTTACGAAAGAAAGTTCGGTGAAATCGTTGATAAGAGGCTG 955
||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 904 GAGTGGGTTTTACCACTTGTTTATGAAAGAAATTTTGGTGAAATCGTTGATAAGAGGCTG 963
Query 956 AGCGAGGAGCATGTGGAAGAGAAGCTGAAGAAAGTAGTCTTGGTGGGGCTTATGTGTGCT 1015
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 964 AGCGAGGAGCATGTGGCAGAGAAACTGAAGAAAGTAGTCTTGGTGGGGCTTATGTGTGCT 1023
Query 1016 CAGACAGATCCAGACAAGAGACCAACAATGTCTGAGGTCGTGGAGATGCTGGTGAATGAA 1075
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1024 CAGACAGATCCAGACAAGAGACCAACAATGTCTGAAGTGGTGGAGATGCTGGTGAATGAA 1083
Query 1076 TCAAAGGAGAAAATGTCAGAACTTGAAGCCAATCCGCTCTTCAAGAATCCATATAGCAAC 1135
|||||||||||||| || ||||||||||| ||||| |||||||||||||||||||||| |
Sbjct 1084 TCAAAGGAGAAAATATCTGAACTTGAAGCTAATCCCCTCTTCAAGAATCCATATAGCAGC 1143
Query 1136 AACGAAAACAATAGAGAGCATGTTTTAGAGGTAAGCTCAGATGTGATCTCAGAAGAGAAA 1195
|||||||||||||||||||||||| ||||| ||||||||||||||||| |||||| |||
Sbjct 1144 AACGAAAACAATAGAGAGCATGTTGCAGAGGAAAGCTCAGATGTGATCTTAGAAGATAAA 1203
Query 1196 GATCA--A-CAACATCAAGAATAGGAATGGTTAGGCACAGGAATTCGTTTGCTCAGATTA 1252
||||| | ||||| ||||||||| ||||||||||||||| |||||||||| |||||||
Sbjct 1204 GATCATCAACAACAACAAGAATAGCAATGGTTAGGCACAGTAATTCGTTTGG-CAGATTA 1262
Query 1253 TTTTTT-ATGATCATTGCTTAtttttttG-GTGTGTTTCTTGGTTCATATTTCATAACAT 1310
||||| | | || |||||||||||||| ||||||||||||||||||| | || |
Sbjct 1263 TTTTTAGAGG-TC-TTGCTTATTTTTTTTAGTGTGTTTCTTGGTTCATA----A-AA--T 1313
Query 1311 TGATTTGATCATTACTGGATATTAGAGTTTGTAAGGTGTGGTATTGGCTCATA 1363
||||||||||||||||| ||| | |||||||||||||||||||||||| ||||
Sbjct 1314 TGATTTGATCATTACTG-ATACTGGAGTTTGTAAGGTGTGGTATTGGCACATA 1365
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67118128665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5