BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479047
Length=2382
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15920.1 | Symbols: | Phox (PX) domain-containing protein |... 3655 0.0
> AT3G15920.1 | Symbols: | Phox (PX) domain-containing protein
| chr3:5383596-5387009 REVERSE LENGTH=2494
Length=2494
Score = 3655 bits (1979), Expect = 0.0
Identities = 2258/2391 (94%), Gaps = 26/2391 (1%)
Strand=Plus/Plus
Query 1 GATCGAGAGAGGAGAAGAAGAATAATCAAGAGAGTAAAAAGGAAATGAATCTCTACGCGC 60
|||||||| ||||||||||| ||||||||||||| ||||||||||||||| |||||||
Sbjct 13 GATCGAGAAAGGAGAAGAAG--GAATCAAGAGAGTAGAAAGGAAATGAATCTATACGCGC 70
Query 61 ACGATCTTTCTCTTCTTGATTTCAATTACAACGTCTCCGGTCCCTTCGGCGAGTCGCTAT 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||
Sbjct 71 ACGATCTTTCTCTTCTCGATTTCAATTACAACGTCTCCGGTCCCTTCGGCGAGCCACTAT 130
Query 121 CTCACCGCTTCCTCTCGCCTGGCCCTTTCTTCCAAGGTGAGGACGACGATTATCGCCGTT 180
|||||||||||||||| |||||||||||||||||||| || || |||||||| ||||| |
Sbjct 131 CTCACCGCTTCCTCTCTCCTGGCCCTTTCTTCCAAGGCGAAGAAGACGATTACCGCCG-T 189
Query 181 ATACCACCAGCTACAGTCACGACGGAGCTAATGGACGAGAAGCAGATACCA-ATTCAAGA 239
| | || ||||||||||||||||||||||||||||||||| | || | || ||||||||
Sbjct 190 A-A-TACGAGCTACAGTCACGACGGAGCTAATGGACGAGAACCGGACA-CAGATTCAAGA 246
Query 240 GTATCTCCGCCGCATCGCCACGACGGAAGGTCTCCGTTACCTCTGGGGATGGATTGGAGT 299
| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 247 GCATCTCCGCCGCATCGCCACGACGGGAGGTCTCCGTTACCTCTGGGAATGGATTGGAGT 306
Query 300 GCTCCTCCTCGTCACTTGGAAGGACGGAACACGGTTTGGCCACACGATTC-TCGAACTGG 358
||||||||||||| ||||||||| || |||||||||||||||| || || |||||||||
Sbjct 307 TCTCCTCCTCGTCATTTGGAAGGAAGGGACACGGTTTGGCCACATGA-TCATCGAACTGG 365
Query 359 TTGGAGTTACTGTGTCACTGTCCCCTCTTGGGTTGACCTTCCCAAGTCAAGCGTTTCAGA 418
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 366 TTGGAGTTACTGTGTCACTGTCCCTTCTTGGGTTGACCTTCCCAAGTCAAGCGTTTCAGA 425
Query 419 TCCCGCCGTGTTTTATAGAGTGCAAGTGGCGATACAATCTCCTGAGGGAATCACTTCTGC 478
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 426 TCCTGCCGTGTTTTATAGAGTGCAAGTAGCGATACAATCTCCTGAGGGAATCACTTCTGC 485
Query 479 TAGGATGATACTTAGAAGATTTAATGATTTCTTGGAGTTATATTCGTCTATTAGAAAGGA 538
|||| || ||||||| || || ||||||||||||||||||||||||||||||| ||||||
Sbjct 486 TAGGCTGGTACTTAGGAGGTTCAATGATTTCTTGGAGTTATATTCGTCTATTAAAAAGGA 545
Query 539 GTTTGTGAAGAAAAGCTTACCCCAGGCACCACCAAAGAAGATTTTGAGGATGAGAAACCA 598
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 546 GTTTGTGAAGAAAAGCTTACCCCAGGCACCACCAAAGAAGATTCTGAGGATGAGAAACCA 605
Query 599 GACACTTTTGGAAGAGAGGAGGTGTTCTCTGGAAGATTGGATGAATAGACTTTTGTCAGA 658
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 606 GACACTTTTGGAAGAGAGGAGGTGCTCTCTGGAAGATTGGATGAATAGACTTTTGTCAGA 665
Query 659 TATTGATATATCTAGAAGCGCTCTGATAGCAACATTTCTTGAGCTTGAAGCTGCTGTCAG 718
|||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 666 TATTGATATATCCAGAAGCGCTCTTATAGCTACATTTCTTGAGCTTGAAGCTGCTGTCAG 725
Query 719 GTCTTATTTTAACGATGAATATCAAGAAACTGAAGGTACCTCTGGGGATATTCCGCCACT 778
|||||||||||| |||||||||||||||||||||| |||||||||||| |||||| ||||
Sbjct 726 GTCTTATTTTAATGATGAATATCAAGAAACTGAAGATACCTCTGGGGACATTCCGTCACT 785
Query 779 TCTACCTACCACCAGT-TCTGATGTTCCTGGTAGTTCATCAGTTACCGTAGATCAT-ACC 836
|||||||||||||| | |||||||| ||||||||||||||||||||| |||||||| | |
Sbjct 786 TCTACCTACCACCA-TCTCTGATGTCCCTGGTAGTTCATCAGTTACCATAGATCATGA-C 843
Query 837 AATGATTCTGCTGATGAGACATCTGATGCCTCAACAGTGAAGCATGACGATGCTAGTCTC 896
|||||||||||||||||||||||| ||||||||||| ||||||||||||| |||| ||||
Sbjct 844 AATGATTCTGCTGATGAGACATCTAATGCCTCAACAATGAAGCATGACGAAGCTAATCTC 903
Query 897 AAAAATCTTGTCTCAAGGAATTCAACTTCTGTAGATAATGTGACTGATTGGCATGAGTTG 956
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 904 AAAAATCTTTTCTCAAGGAATTCAACTGCTGTAGATAATGTGACTGATTGGCATGAGTTG 963
Query 957 ATCTCAGAATATGGACTTCTAGATAAAAGTTCTTTTCAGGAAAAAGTTGAACGTCTTTCT 1016
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 964 ATCACAGAATATGGACTTCTAGATCAAAGTTCTTTTCAGGAAAAAGTTGAACGTCTTTCT 1023
Query 1017 AGTACTAATGGAGCTGCAGCAACTGGTACCGTAACCGGAGAGGGCATTTCTAGTGGAGTT 1076
||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 1024 AGTACTAATGGAGATGCAGCAACTGGTACCGTAACCAGAGGGGGCATTTCTAGTGGAGTT 1083
Query 1077 GGGATTCAGAGGTTGGATGGAAGTGATAGAAAGTTTCAAGAAAAGATCACTGAAAGC--- 1133
|| ||||||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct 1084 GGAATTCAGAGGTTGGATGGAAGTGATAGAAAGTTTCAAGAACTGACCATTGAAAGCATT 1143
Query 1134 AATAAAACTCATGTAAGCGATTTTGAGGCGTCAACTCCTGGGGAACCTGATTTAGTTAAC 1193
|| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 1144 AAAAAAACTCATGTAAGCGATTTTGAGGCGTCAACTGCTGTGGAACCTGATTTAGTTAAC 1203
Query 1194 CAAGGCTCGATGGATATTCATGGTGAAGCTCATGGAAACATGTATGGTGCGGTTGGTGGA 1253
|||||| | |||||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 1204 CAAGGCGCTATGGATATTCATGGTGAAGCCCATGGAAACATGTATGGTGCAGTAGGTGGA 1263
Query 1254 GATACTGAGACTCAGAAGGATCTGGCTATTGTATTTCAGTCTGAGGAGAGACATAAGTTA 1313
||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||
Sbjct 1264 GATACTGAGACTCAGAAGGATCTTGCTATTGTATTTCAGTCTGAGGAGCGACATAAATTA 1323
Query 1314 AAGAGGGTTATTGATACGTTAAAGCAGAGACTGGAAACAGCAAAAGCTGACACGGAAGAT 1373
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1324 AAGAGGGTTATTGATACATTAAAGCAGAGACTGGAAACAGCAAAAGCTGACACGGAAGAT 1383
Query 1374 CTTATCTCAAGGCTGAATCAGGAGTTAGCTGTTCGACAGTTTTTGTCAACAAAGGTAAGA 1433
||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||
Sbjct 1384 CTTATCTCAAGGCTGAATCAGGAGTTAGCCGTTCGACAATTTCTGTCAACAAAGGTAAGA 1443
Query 1434 GATTTAGAGGTTGAACTTGAAACAACTCGAGAGAGCTGCAAGCAAGGCATGGAGAAAACA 1493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1444 GATTTAGAGGTTGAACTTGAAACAACTCGAGAGAGCTGCAAGCAAGGCATGGAGAAAACA 1503
Query 1494 GTTCTTGATGAAAAGGAAAGATTTACTCAAATTCAGTGGGATATGGAGGAACTCCGCAAG 1553
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1504 GTCCTAGATGAAAAGGAAAGATTTACTCAAATTCAGTGGGATATGGAGGAACTCCGCAAG 1563
Query 1554 CAATGCATGGAAATGGAATCGTTGTTAAACTCTATAAAGGACGAGAAAACACATATTGAG 1613
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1564 CAATGCATGGAAATGGAATCGTTTTTAAACTCTATAAAGGACGAGAAAACACATATTGAG 1623
Query 1614 ACTGCAAATGAGTCACTTGTTCAAGAAAATCAGATGTTGCTGCAGCAGATCAATGATATA 1673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1624 ACTGCAAATGAGTCACTTGTTCAAGAAAATCAGATGTTGCTGCAGCAGATCAATGATATA 1683
Query 1674 CGAGAAAATTTTGAGAATTTTCATAAAGAACATGAAGAGCTGGAAGTAAAATCGAAAGCA 1733
||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||
Sbjct 1684 AGAGAAAATTTTGAGAATTTTCATAAAGAACACGAAGAGCTGGAAGTGAAAGCGAAAGCA 1743
Query 1734 GAGCTGAAAGTTCTCGTCAAAGAAGTCAAGTCTCTCCGAACCACTCAATCAGAATTGAGA 1793
||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1744 GAGCTGAAAGTCCTCGTTAAAGAGGTCAAGTCTCTCCGAACCACTCAATCAGATTTGAGA 1803
Query 1794 CAAGAGCTTAGTCG-CACAATGAAAGAAAAACTGGAGATGGAGAGAATTGTTCAACGCGA 1852
||||||||||| || || ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1804 CAAGAGCTTAG-CGGCATAATGAAAGAAAAACTGGAGATGGAGAGAATTGTTCAACGGGA 1862
Query 1853 GAAGGATAGAGAAGAAACTGCAAAAAACGCAGACAAGAAGTTGCTGCATGAGTGTGATGT 1912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1863 GAAGGATAGAGAAGAAACTGCAAAAAACGCAGACAAGAAGTTGCTGCATGAGTGTGATGT 1922
Query 1913 TCTACAAAATCGGCTTCAAGAGTGCAATGTCAAGTTCCACATTGAAGAGGAGTGTAAATT 1972
||||||||| ||||||||||| ||||||||||||||| |||||||||||||| |||||||
Sbjct 1923 TCTACAAAACCGGCTTCAAGAATGCAATGTCAAGTTCGACATTGAAGAGGAGGGTAAATT 1982
Query 1973 AATAATGGACTCATCATCTCTCTCTGAAGCCATCGAGCTACTAGCAACATCCGATAACCG 2032
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1983 AATAATGGACTCATCATCTCTATCCGAAGCCATCGAGCTACTAGCAACATCCGATAACCG 2042
Query 2033 AATAGGTCTTCTAATTGCTGAGACGCAGCTTCTCTCAGAGGAAGTGGAAAAGCTGAAGCT 2092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2043 AATAGGTCTTCTAATTGCTGAGACGCAGCTTCTCTCAGAGGAAGTGGAAAAGCTGAAGCT 2102
Query 2093 ATCATCAGGAGGGCATCGTGGAACAGACGATGTAGTGAGGAAGATGCTGACAGAGGTTCT 2152
| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 2103 AACATCAGGAGGGCATCGTGGAACAGACGATCTAGTAAGGAAGATGCTGACAGAGGTTCT 2162
Query 2153 GATTGATAATGCCAGATTAAGGAAGCAGGTTAACTCTGTTCTTCGTTGCTCTTTGTCCGG 2212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2163 GATTGATAATGCCAGATTAAGGAAGCAGGTTAACTCTGTTCTTCGTTGCTCTTTGTCCGG 2222
Query 2213 ACATGGAGTATCAGTCagagaagccggaacagaagaagaagtagaagagcaagaaggaag 2272
||||||| ||||||||||||||||||||||||||| ||| | || || | ||||||||
Sbjct 2223 ACATGGAATATCAGTCAGAGAAGCCGGAACAGAAGTAGA--T-GACGA--A-GAAGGAAG 2276
Query 2273 TATTGATCTAGCAAGAACTGTTATGAGCAAGATCCTTGAGAAATGATTTTACCAGGTTTT 2332
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 2277 TATTGATCTAGCAAGAACTGTTATGAGCAAGATCCTTGAGAAATGATTTGATCAGGTTTT 2336
Query 2333 TAGTGAAACTATGCTAAT-TACAAATGGTTTTATCTTTTTAAAAATACTGT 2382
| ||||||||| |||||| | ||||||||||||||||| | ||||||||||
Sbjct 2337 TCGTGAAACTAAGCTAATCT-CAAATGGTTTTATCTTTCTGAAAATACTGT 2386
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118272484020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5