BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479051
Length=1612
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15970.1 | Symbols: | NUP50 (Nucleoporin 50 kDa) protein | ... 2098 0.0
> AT3G15970.1 | Symbols: | NUP50 (Nucleoporin 50 kDa) protein
| chr3:5408797-5411143 REVERSE LENGTH=1738
Length=1738
Score = 2098 bits (1136), Expect = 0.0
Identities = 1444/1587 (91%), Gaps = 43/1587 (3%)
Strand=Plus/Plus
Query 42 ATGGGGGACTCAGATAATGCTATACCATTTTCCAAAAAGAGAGCTGCTCT-AAACGAGCT 100
||||||||||| |||||||||||||||||||||| ||||||| ||||||| ||| |||||
Sbjct 156 ATGGGGGACTCCGATAATGCTATACCATTTTCCAGAAAGAGAACTGCTCTGAAA-GAGCT 214
Query 101 GTCTCGTGACAATCCTGGTCTTGATGATGA--A-GAAGACACTTCTGCACTCGAGAGTGG 157
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 215 GTCTCGTGACAATCCTGGTCTTGATGATGATGATGAAGACACTTCTGCACTCGAGAGTGG 274
Query 158 TACCTTCAAGACTGCTAGTGAGGAGGTGTTGGCAAGCAGAAGAATTGTCAAAGTTAAGCG 217
||||||||| ||||||||| |||||||||||||||||||||||||| ||| ||||| |||
Sbjct 275 TACCTTCAACACTGCTAGTAAGGAGGTGTTGGCAAGCAGAAGAATTATCAGAGTTAGGCG 334
Query 218 CAGAGATCCATCTGCTGCAGCAGCACCAGCACCAGCTTCCAATCCATTTGCTGGAATTCG 277
|| ||||| ||||||| | | ||| | |||||||||| ||||||||| ||||||||||
Sbjct 335 CACAGATCGATCTGCT--A-CTGCA-C--CACCAGCTTCTAATCCATTTACTGGAATTCG 388
Query 278 TTTGGTCCCTTTAACTGTTCTCGCTGCAGAAACTACTAAGCCT-CTG-TGCGGGTCA-TA 334
|||||| ||||| |||| ||| |||| || || | || ||| ||| | | |
Sbjct 389 TTTGGTTCCTTTTACTG--CTC-CTGC---TCCTTCT-A--CTGCTGCTGC-AGAAACGA 438
Query 335 TTCAA-CTCCGTCTGAGGGAAAACAAGAGACACTGGATGATGGAAGTTCTGATGCTACCA 393
| || ||| ||||| |||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 439 CTAAACCTCTGTCTGCGGGAAAACAAGAGACACTGGCTGATGGAAGGTCTGATGCTACCA 498
Query 394 AGGAAACTGATGGTGACAAG-AAAGAAGAGAGTGACGCAGTTGATGCTCTTGGAAAACAA 452
||||||||||||||||| || |||||| ||||||||||| |||||||| | |||||||||
Sbjct 499 AGGAAACTGATGGTGAC-AGTAAAGAAAAGAGTGACGCAATTGATGCTGTAGGAAAACAA 557
Query 453 GAGACACAGGATGATGGAATATCTGATAAGACCAAGGATGCTGTTGATGGTGGCGAGAAT 512
|||||||||| ||||| |||||||| ||||||||||||| | |||||||||| |||||
Sbjct 558 GAGACACAGGGTGATGAAATATCTGCTAAGACCAAGGATATTATTGATGGTGGAGAGAAA 617
Query 513 GAGAAGACTGAGGCAGTTAATACTGGAGAGGGTGGTGGAGCTGGAAACAAGAATGAAGAA 572
|||| || ||||||||||||| | | ||||||||||||||||| |||||||||||||||
Sbjct 618 GAGATGAGTGAGGCAGTTAATTCCGTAGAGGGTGGTGGAGCTGTAAACAAGAATGAAGAC 677
Query 573 GAGATTAAAACAACGACAG-TAATCGAAGCTGCTGCTGGGGAAGAGACTGAAAAATCTAA 631
|||||||| ||||||| | || | |||| |||||||||||||||||||| | ||
Sbjct 678 GAGATTAAGACAACGATGGTTACT-GAAGTTGCTGCTGGGGAAGAGACTG-----T-AAA 730
Query 632 AGATGACAACGACAATGGCAACACTGTTGAGGGAACTGACTGTGTTGTCAAGGATTCAGG 691
|||||||||| ||||| |||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 731 AGATGACAACAACAATAGCAACACTGTTGAGGGAAGTGACTGTGTTGTCAAGGATACAGG 790
Query 692 TGGTAATCAGACTGAGGAAGAAGGAAAAGAGGGCGATGGAAATGAAGACACAGAGAAAAA 751
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 TGGTAATCAGACTGAGAAAGAAGGAAAAGAGGGCGATGGAAATGAAGACACAGAGAAAAA 850
Query 752 TGGAGATAGTGGAGCCTTGAGCTCCTTCCACCAGCACTCTAGTAGCAAAAACGCATTCAC 811
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 851 TGGAGATAGTGGAGCCTTGAGCTCCTTCCACCAGCACTCAAGTAGCAAAAACGCATTCAC 910
Query 812 AGGACTTGCTAGTACAGGTTTCTCTGCTTCTTCTTTCTCGTTCGGTTTGGTTCCACAGGA 871
|||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| ||
Sbjct 911 AGGACTTGCTAGCACAGGGTTCTCTGCTTCTTCGTTCTCGTTCGGTTTGGTTCCACAAGA 970
Query 872 AGGTTCGACTGGGTCTC-TGACTGAACAGTCATCCTTTAGCTTTGGCCT-GCCAACCAAT 929
|||||||||||||||| | |||||||||||||||| || ||||||| || ||| |||
Sbjct 971 AGGTTCGACTGGGTCTGGTT-CTGAACAGTCATCCTTCAGTTTTGGCCAAGCAAAC-AAT 1028
Query 930 GGAAACTCTTCCCTGTTTGGTGCGTCCGTTTCTACTTCCATTACCATGAAGAGCACGGAA 989
||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||
Sbjct 1029 GGAAACTCTTCCCTGTTTGGTGCATCCGTTGCTACTTCCATTACCACGAAGAGCACGGAA 1088
Query 990 ACTACTACTGCCTTCCCATCAAAGCAAGATGTTTCAGTGGAAACAGGAGAAGAGAACGAG 1049
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1089 ACTACTACTGCCTTCCCATCAAAGCAAGATGTTTCAGTGGAAACAGGAGAAGAGAACGAA 1148
Query 1050 AAAGCAGCCTTCACAGCTGATTCAGTAATGTTTGAATATCTTGAGGGAGGATGGAAAGAG 1109
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1149 AAAGCAGCCTTCACAGCTGACTCAGTAATGTTCGAATATCTTGAGGGAGGATGGAAAGAG 1208
Query 1110 CGTGGGAAAGGAGAACTCAAGGTAAATATATCAACGACTGAAAACAGAAAAGCCAGGTTA 1169
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1209 CGTGGGAAAGGAGAACTCAAGGTGAATATATCAACGACTGAAAACAGAAAAGCCAGGTTA 1268
Query 1170 GTAATGAGATCAAAAGGAAACTACAGGTTGATCTTAAACGCAAGTCTTTACCCGGAAATG 1229
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1269 GTAATGAGATCAAAAGGAAACTACAGGTTGACCTTAAACGCAAGTCTTTACCCGGAAATG 1328
Query 1230 AAACTGGCTAACATGGACAAGAAAGGAATCACATTTGCTTGTGTGAATAGTGTAAGTGAA 1289
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1329 AAACTGGCTAAAATGGACAAGAAAGGAATCACATTTGCTTGTGTGAATAGTGTAAGTGAC 1388
Query 1290 GCCAAGGATGGTCTCTCTACATTTGCACTCAAGTTCAAGGATCCAACGGTTGTAGAAGAG 1349
||||||||||||||||||||||| ||||| ||||||||||| ||||| || || ||||||
Sbjct 1389 GCCAAGGATGGTCTCTCTACATTGGCACTGAAGTTCAAGGACCCAACAGTGGTGGAAGAG 1448
Query 1350 TTCCGAGCAGTTATCGAAGCACATAAAGACAGTAAGCCCGCCGTTGCAGAAGCAGCAGCT 1409
||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||
Sbjct 1449 TTCCGAGCAGTTATCGAAGAACATAAAGACAGTAAACCTTCCGTTGCAGAAGCAGCAGCT 1508
Query 1410 CCTTTGAAGACACCTGAGAACTCACCGAGTGCTGAAGATGCTTGAAGGTAAAAAACTTCG 1469
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1509 CCTTTGAAGACACCTGAGAACTCACCGAGTGCTGAAGATGCTTGAAGGTTAAAAACTTTG 1568
Query 1470 AAACAT-TCGTCGTCTAGTATCCTTGTGTTCT-T--GTCTATGTTGTTTGAAGTTCAAAT 1525
||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1569 AAACAACTCGTCGTCTAGTATCCTTGTGTTCTATTTGTCTATGTTGTTTGAAGTTCAAAT 1628
Query 1526 TTGGCAGAGAGAATAGAGAGATTATATAGACCAATTGAACTCCGTATGGGTCTCTTATGA 1585
||||||||||||||||||||| |||||||| || ||||||||| ||||||||||||||||
Sbjct 1629 TTGGCAGAGAGAATAGAGAGACTATATAGATCACTTGAACTCCTTATGGGTCTCTTATGA 1688
Query 1586 ATGAACATTCCATGTTACTGCTTTTAA 1612
||||| |||| | ||||||| ||||||
Sbjct 1689 ATGAATATTCGAAGTTACTGTTTTTAA 1715
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79618064370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5