BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479057
Length=2024
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16010.1 | Symbols: | Pentatricopeptide repeat (PPR-like) s... 3116 0.0
> AT3G16010.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr3:5434014-5436264 FORWARD LENGTH=2077
Length=2077
Score = 3116 bits (1687), Expect = 0.0
Identities = 1920/2033 (94%), Gaps = 14/2033 (1%)
Strand=Plus/Plus
Query 1 TAAAACCACCGACGGCGACTTGAAATAG-CGTTGGAGTTTGGTCGCCACC-G-G-ACTGT 56
||||||||||||||||||||| |||||| ||| ||| ||| ||||||||| | | | |||
Sbjct 45 TAAAACCACCGACGGCGACTTCAAATAGACGTCGGAATTT-GTCGCCACCGGAGAATTGT 103
Query 57 TACATGTAAAACACG-TTTATAAAGATGGTGTATATATCGGCGCGATCC-ATACTCGCGA 114
||||||| || | || |||||||||||| ||||| |||| || |||||| | || ||||
Sbjct 104 TACATGTGAATCCCGTTTTATAAAGATGATGTATGTATCTGCTCGATCCGGTTCT-GCGA 162
Query 115 AGCGAAGTGTCTCGAGTCTACCCT-ACCTCTCTCAGAGATTTAAACAAACAGAGAATGAG 173
||||||| |||| |||||| ||| | |||||||||||||||||||||||||||||||||
Sbjct 163 AGCGAAGCATCTCAAGTCTA-CCTCATCTCTCTCAGAGATTTAAACAAACAGAGAATGAG 221
Query 174 ATTGTTCAAATGTTTAGTATTCCGAATCATGAGGAATCTGAGAAGCCTCAAGAGAAGTGG 233
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 222 ATTGTTCAAATGTTTAGTGTTCCGAATCATGAGGAATCTGAGAAGCCTCAAGAGAAGTGG 281
Query 234 AAATTATCTAGGAAA-GATCCGTCAGTGCGAATGTTGGATGAGAGATTCATTAGGATAGT 292
|||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 282 AAATTATCTA-GAAAGGATCCGTCAGTGCGGATGTTGGATGAGAGATTCATTAGGATAGT 340
Query 293 GAAAATCTTCAAATGGGGACCTGATGCTGAGAAAGCTCTTGAGGTACTTAAACTGAAAGT 352
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 341 GAAAATCTTCAAATGGGGACCTGATGCTGAGAAAGCTCTTGAGGTGCTTAAACTGAAAGT 400
Query 353 TGATCACCGATTAGTTCGTTCGATTCTGGAAATAGACGTTGAGATAAATGTCAAGATTCA 412
|||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 401 TGATCATCGATTAGTTCGTTCGATTCTTGAGATAGACGTTGAGATAAATGTCAAGATTCA 460
Query 413 GTTTTTCAAATGGGCTGGTAAAAGAAGAAACTTTCAGCATGATTGTTCCACTTACATGGC 472
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 461 GTTTTTCAAATGGGCTGGTAAAAGAAGAAACTTTCAGCATGATTGCTCCACTTACATGAC 520
Query 473 CTTAATACGTTGCCTTGAAGAAGCTAGGCTTTACGGTGAAATGTATAGAACGATACAAGA 532
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 521 CTTAATACGCTGCCTTGAAGAAGCTAGGCTTTATGGTGAAATGTATAGAACGATACAAGA 580
Query 533 GGTGGTTCGTAACACATATGTTAGCGTTAGTCCGGTAGTACTCTCTGAGCTTGTGAAAGC 592
||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 581 AGTGGTCCGTAACACATATGTTAGCGTTAGTCCAGCAGTACTCTCTGAGCTTGTGAAAGC 640
Query 593 ATTGGGGCGAGCTAAGATGGTTAGTAAAGCTTTGTCGGTTTTTTACCAGGCGAAAGGACG 652
||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 641 ATTGGGGCGAGCTAAGATGGTTAGTAAAGCTTTATCGGTTTTTTATCAGGCAAAAGGACG 700
Query 653 CAAGTGCAAACCCACTTCGAGCACTTATAACTCGGTAATTCTAATGTTGATGCAAGAAGG 712
|||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 701 CAAGTGTAAACCCACTTCGAGCACTTACAACTCGGTGATTCTAATGTTGATGCAAGAAGG 760
Query 713 ACAACACGAGAAAGTCCATGAGGTTTATACTGAGATGTGTAACGAAGGTGACTGTTTTCC 772
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 761 ACAGCACGAGAAAGTCCATGAGGTTTATACTGAGATGTGTAACGAAGGTGACTGTTTTCC 820
Query 773 AGACACGATTACTTACTCTGCGCTTATATCCTCGTATGAAAAACTAGGTCGTAATGATTC 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 821 AGACACGATTACTTACTCTGCGCTTATATCCTCGTATGAAAAACTAGGTCGTAATGATTC 880
Query 833 TGCTATAAGGTTGTTTGATGAGATGAAGGATAACTGTATGCAGCCTACAGAGAAAATATA 892
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 881 TGCGATAAGGTTGTTTGATGAAATGAAGGATAACTGTATGCAGCCTACAGAGAAAATATA 940
Query 893 CACCACGTTGCTGGGAATATACTTTAAGGTGGGTAAAGTTGAGAAAGCTTTGGATCTTTT 952
|||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 941 CACCACGTTGTTGGGAATTTACTTTAAGGTGGGTAAAGTTGAGAAAGCTTTAGATCTTTT 1000
Query 953 TGAGGAGATGAAACGAGCAGGTTGCTCGCCTACAGTTTATACTTACACAGAACTGATAAA 1012
||||||||||||||||||||||| || || ||||||||||| ||||| |||||||||||
Sbjct 1001 CGAGGAGATGAAACGAGCAGGTTGTTCACCAACAGTTTATACGTACACGGAACTGATAAA 1060
Query 1013 GGGACTTGGCAAAGCTGGGAGGGTAGAAGAAGCATATGATTTATATAA-GAACATGCTTA 1071
||||||||||||||||||||||||||| |||||||||| || ||||| || ||||||||
Sbjct 1061 GGGACTTGGCAAAGCTGGGAGGGTAGATGAAGCATATGGCTTCTATAAAGA-CATGCTTA 1119
Query 1072 CAGATGGATTGACTCCTGATGTTGTGTTCTTAAACAATCTGATGAACATTTTAGGCAAAG 1131
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1120 GAGATGGATTGACTCCTGATGTTGTGTTCTTAAACAATCTGATGAACATTTTAGGCAAAG 1179
Query 1132 TGGGTCGATTGGAGGAGTTAACGAATGTCTTCAATGAGATGGGAACATGGAGATGTACAC 1191
|||||||| |||||||||| || |||||||||| ||||||||||| |||||||||||||
Sbjct 1180 TGGGTCGAGTGGAGGAGTTGACAAATGTCTTCAGTGAGATGGGAATGTGGAGATGTACAC 1239
Query 1192 CGACTGTTGTTTCATACAATACCGTGATTAAAGCTCTATTTGAGTCAAAAGCACCTGTTT 1251
| |||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 1240 CCACTGTTGTCTCATACAATACCGTGATTAAAGCTCTGTTTGAGTCAAAAGCACATGTTT 1299
Query 1252 CGGAAGTGAGCTCCTGGTTTGATAAGATGAAAGCAGATGGTGTTTCCCCTAGTGAATTCA 1311
||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1300 CGGAAGTAAGCTCTTGGTTTGATAAGATGAAAGCAGACAGTGTTTCCCCTAGTGAATTCA 1359
Query 1312 CTTACTCTATCCTTATAGATGGTTATTGTAAAACGAATAGAGTAGAGAAAGCTCTGTTGC 1371
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1360 CTTACTCAATCCTTATAGATGGTTATTGTAAAACGAATAGAGTAGAGAAAGCTCTGTTGC 1419
Query 1372 TTCTTGAGGAGATGGATGAAAAAGGTTTTCCACCTTGTCCTGCAGCGTATTGCAGCCTCA 1431
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1420 TGCTTGAGGAGATGGATGAGAAAGGTTTTCCACCTTGTCCTGCAGCGTATTGCAGCCTCA 1479
Query 1432 TAAACGCTCTTGGAAAGGCAAAAAGATATGAAGCAGCAAATGAGCTATTTAAGGAACTAA 1491
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1480 TAAACGCTCTTGGAAAGGCGAAAAGATATGAAGCAGCGAATGAGCTATTTAAGGAACTAA 1539
Query 1492 AAGAAAACTTCGGCAATGTAAGTTCTCGAGTATACGCTGTGATGATCAAACATTTTGGGA 1551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1540 AAGAAAACTTCGGCAATGTAAGTTCTCGAGTATACGCTGTGATGATCAAACATTTTGGGA 1599
Query 1552 AATGTGGGAAGCTCAGCGAAGCTGTAGATCTCTTCAATGAGATGAAGAACCAAGGAAGCG 1611
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1600 AATGCGGGAAGCTCAGCGAAGCTGTAGATCTCTTCAATGAGATGAAGAACCAAGGAAGTG 1659
Query 1612 GTCCAGATGTTTATGCTTACAACGCCCTCATGTCAGGAATGGTAAAGGCTGGTATGGTAA 1671
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1660 GTCCCGATGTTTATGCCTACAACGCCCTCATGTCAGGAATGGTAAAGGCTGGTATGATCA 1719
Query 1672 ATGAAGCTAATTCGTTGCTTAGAAAGATGGAAGAAAACGGTTGCACTGCGGATATAAATT 1731
| ||||||||||| ||||||||||||||||||||||||||||||| || |||||||| |
Sbjct 1720 ACGAAGCTAATTCCTTGCTTAGAAAGATGGAAGAAAACGGTTGCAGGGCCGATATAAACT 1779
Query 1732 CGCACAATATCATCCTCAATGGATTTGCGAGAACAGGTGTGCCGAGGCGGGCTATAGAGA 1791
|||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
Sbjct 1780 CGCATAATATCATCCTCAATGGATTTGCTAGAACAGGTGTGCCGAGACGGGCTATAGAAA 1839
Query 1792 TGTTTGAAACTATGAAGCATTGTGGTATTAAGCCTGATGGTGTCACTTATAATACTCTTC 1851
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1840 TGTTTGAAACTATAAAGCATTCTGGTATTAAGCCTGATGGTGTCACTTATAATACTCTTC 1899
Query 1852 TTGGATGCTTCGCACATGCTGGAATGTTTGAGGAAGCTGCAAGACTGATGAGAGAGATGA 1911
|||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 1900 TTGGATGCTTTGCACATGCTGGAATGTTTGAGGAGGCTGCAAGAATGATGAGAGAGATGA 1959
Query 1912 AAGATAAAGGATTTGAGTATGATGCCATCACTTACTCATCTATACTTGACGCTGTTGGCA 1971
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1960 AAGATAAAGGCTTTGAGTATGATGCCATCACTTACTCATCTATACTTGACGCTGTTGGCA 2019
Query 1972 ATATGGATCATGAAAAAGATGATGTTTCATCTTTGTAAGAGTTGATTTCTCTA 2024
|| ||||||||||||||||||||||||||||||| ||||| ||||||| ||||
Sbjct 2020 ATGTGGATCATGAAAAAGATGATGTTTCATCTTTCTAAGATTTGATTTATCTA 2072
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100300688910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5