BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479060
Length=1268
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16050.1 | Symbols: A37, ATPDX1.2, PDX1.2 | pyridoxine biosy... 1925 0.0
> AT3G16050.1 | Symbols: A37, ATPDX1.2, PDX1.2 | pyridoxine biosynthesis
1.2 | chr3:5443950-5445329 REVERSE LENGTH=1380
Length=1380
Score = 1925 bits (1042), Expect = 0.0
Identities = 1207/1284 (94%), Gaps = 22/1284 (2%)
Strand=Plus/Plus
Query 1 GACGAACATTCTCAGAAGCTTCTAGACCAAACCACACTCTTC-T--TCTTCTCCATTCTC 57
|||||||| ||||||||| ||||||||||||||||||||||| | |||||||| |||||
Sbjct 86 GACGAACAGTCTCAGAAGTTTCTAGACCAAACCACACTCTTCTTCGTCTTCTCCGTTCTC 145
Query 58 TCTATAATTCTCCTCACTTTCCACGCAGCTTTCTCGTTCTCGTCTCAGATCGTGTTACTA 117
|||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 146 TCTATATTTCTCCTCACCTTCAACGCAGCTTTCTCGTTCTCGTCTCAGATCGTGTTACTA 205
Query 118 ACAAACAACATTTCTCCGGCGAAAAGCTCTCTGTTACT----A---AC--AACCTAAAAA 168
||||||| | |||||||||||||||||||||||||||| | || ||||||||||
Sbjct 206 ACAAACACCGTTTCTCCGGCGAAAAGCTCTCTGTTACTAAAAACTCACAGAACCTAAAAA 265
Query 169 TGGCGGATCAAGCTATGACTGATCAAGAACAAGGAGCTGTTACTCTCTACAGCGGCGCAG 228
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||
Sbjct 266 TGGCGGATCAAGCTATGACGGATCAAGATCAAGGAGCTGTTACTCTCTACAGCGGCACAG 325
Query 229 CCATCACCGACGCGAAGAAAAACCATCCGTTCTCTGTTAAGGTTGGATTAGCTCAAGTAC 288
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 326 CCATTACCGACGCGAAGAAAAACCATCCGTTCTCTGTTAAGGTCGGATTAGCTCAGGTAC 385
Query 289 TTCGTGGCGGCGCCATTGTTGAGGTTTCTTCTGTTAACCAGGCTAAGATCGCTGAATCCG 348
|||||||||||||||||||||| ||||| || |||||||| |||||| ||||||||||||
Sbjct 386 TTCGTGGCGGCGCCATTGTTGAAGTTTCCTCGGTTAACCAAGCTAAGCTCGCTGAATCCG 445
Query 349 CAGGCGCATGTTCTGTTATCGTCTCAGATCCGGTTCGATCTCGCGGTGGTGTTCGTCGTA 408
| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 446 CCGGCGCATGTTCTGTAATCGTCTCAGATCCGGTTCGATCTCGCGGCGGTGTTCGTCGTA 505
Query 409 TGCCGGATCCGGTTCTTATCAAAGAGGTGAAACGAGCTGTGTCTGTACCTGTGATGGGAC 468
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 506 TGCCGGATCCGGTTCTCATCAAAGAGGTAAAACGAGCTGTGTCTGTACCTGTGATGGCAC 565
Query 469 GAGCTCGCGTTGGTCATTTCGTTGAGGCTCAGATCTTGGAATCTCTTGCGGTTGATTACA 528
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 566 GAGCTCGCGTTGGTCATTTTGTTGAGGCTCAGATCTTGGAATCTCTTGCGGTTGATTACA 625
Query 529 TTGACGAGAGCGAGATTATCTCTGTAGCGGACGAAGATCATTTCATCAACAAACACAATT 588
||||||||||||||||||||||||| ||||| || |||||||||||||||||||| ||||
Sbjct 626 TTGACGAGAGCGAGATTATCTCTGTTGCGGATGATGATCATTTCATCAACAAACATAATT 685
Query 589 TCCGATCTCCGTTCATTTGTGGTTGCCGTGATACAGGAGAAGCTTTGAGGAGAATCAGAG 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 686 TCCGATCTCCGTTCATTTGTGGTTGCCGTGATACAGGAGAAGCTTTGAGGAGAATCAGAG 745
Query 649 AAGGTGCTGCTATGATCAGGATCCAAGGAGATTTAACCGCAACAGGTAATATTGCAGAGA 708
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 746 AAGGTGCTGCTATGATTAGGATCCAAGGAGATTTAACCGCAACAGGTAACATTGCAGAGA 805
Query 709 CTGTGAAGAACGTTAGGTCATTGATGGGTGAAGTTAGAGTCTTGAACAACATGGATGATG 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 806 CTGTGAAGAACGTTAGGTCATTGATGGGTGAAGTTAGAGTCTTGAACAACATGGATGATG 865
Query 769 ATGAGGTGTTTACATTTGCTAAGAAGATATCAGCACCGTATGATCTTGTGGCTCAGACTA 828
|||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 866 ATGAGGTGTTCACGTTTGCTAAGAAGATTTCAGCACCGTATGATCTTGTGGCTCAGACTA 925
Query 829 AGCAGATGGGTAGGGTTCCGGTGGTTCAGTTCGCATCAGGTGGGATCACGACTCCTGCTG 888
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 926 AGCAGATGGGTAGGGTTCCGGTTGTTCAGTTTGCATCAGGTGGGATCACGACTCCTGCTG 985
Query 889 ATGCAGCTTTGATGATGCAGCTTGGTTGTGATGGAGTTTTCGTTGGTTCTGAGGTTTTTG 948
|||||||||||||||||||||| ||||||||||| ||||| || ||||||||||||||||
Sbjct 986 ATGCAGCTTTGATGATGCAGCTAGGTTGTGATGGGGTTTTTGTGGGTTCTGAGGTTTTTG 1045
Query 949 ATGGTCCTGATCCGTTTAAGAAGCTTAGGAGCATTGTTCAAGCTGTTCAACATTACAATG 1008
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1046 ATGGTCCTGATCCGTTTAAGAAACTTAGGAGCATTGTTCAAGCTGTTCAACATTACAATG 1105
Query 1009 ATCCTCATGTGTTGGCTGAGATGAGTTCTGGGTTGGAGAATGCAATGGAGAGCTTAAATG 1068
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1106 ATCCTCATGTGTTGGCTGAGATGAGTTCTGGATTGGAGAATGCAATGGAGAGCTTAAATG 1165
Query 1069 TTCGTGGTGACAGGATTCAGGATTTTAGCCAAGGAAGTGTTTGATGGGAAGGTTC-AAGT 1127
||||||||||||||||||| || ||| ||||||| ||||||||||| ||||||| |||
Sbjct 1166 TTCGTGGTGACAGGATTCAAGACTTTGGCCAAGGCAGTGTTTGATGAAAAGGTTCGAAGC 1225
Query 1128 TGCAAACTTTTTGGGACTTCTAAAGTCGTAATCTTTTTTGGTTT-GACTATTAAAATATC 1186
|||||||||||||||||||||||||||||||||||||||||||| || | | ||||||||
Sbjct 1226 TGCAAACTTTTTGGGACTTCTAAAGTCGTAATCTTTTTTGGTTTTGAGTCTCAAAATATC 1285
Query 1187 GGTTGTTTTTTGTTAATGCTGGTGCATGCATATGATCCTTTTGGTTTAATT-AAAGCTTG 1245
||||||||||||||||||||||||||| || ||||| ||||||||||| ||| ||||
Sbjct 1286 GGTTGTTTTTTGTTAATGCTGGTGCAT--AT--GATCCGTTTGGTTTAATCGAAA-CTTG 1340
Query 1246 CAACAACTAAAACCAT-AATGAAA 1268
|||||||||||||| | |||||||
Sbjct 1341 CAACAACTAAAACC-TCAATGAAA 1363
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62349076890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5