BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg479066

Length=625
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G16120.1 | Symbols:  | Dynein light chain type 1 family prot...   789    0.0  
  AT1G52240.1 | Symbols: ATROPGEF11, ROPGEF11, PIRF1 | RHO guanyl...   222    3e-57


> AT3G16120.1 | Symbols:  | Dynein light chain type 1 family protein 
| chr3:5464769-5465531 FORWARD LENGTH=684
Length=684

 Score =  789 bits (427),  Expect = 0.0
 Identities = 551/606 (91%), Gaps = 28/606 (5%)
 Strand=Plus/Plus

Query  1    AAAATTGTGACCaaaa-ataaagttaaaagataagaagaaagaagaagaagaagaaagaT  59
            |||||||||||||||| | |||||| |||||||||||||| ||||||||| ||| |||||
Sbjct  5    AAAATTGTGACCAAAACA-AAAGTT-AAAGATAAGAAGAACGAAGAAGAATAAGCAAGAT  62

Query  60   TTTCTTATCTAGTTATCCACAAGGTAATAATACAGTTCCTTAAACTCAGGAAG-AAATAG  118
            |||||||||||| ||||  |||||||||||||||||||||||||||||||||| ||| ||
Sbjct  63   TTTCTTATCTAGATATCTGCAAGGTAATAATACAGTTCCTTAAACTCAGGAAGAAAAGAG  122

Query  119  AAAACGACAGAAACATACAACATGTGGAGATTCTATCCCTAAAAGGCTAAAACCTGTCCA  178
            |||||||||||  |  | |||||||||||||||| | ||       ||||||||||||||
Sbjct  123  AAAACGACAGAGGC--AGAACATGTGGAGATTCTCT-CC-------CTAAAACCTGTCCA  172

Query  179  AAACGTGACGTACAATTCA-TTTTATCTTCTCCTTACAAGTTATCTTCTAATAGGAGTTT  237
            ||||||||||||||||||| ||||||||||||||||| |||||||||||  |   | |||
Sbjct  173  AAACGTGACGTACAATTCATTTTTATCTTCTCCTTACGAGTTATCTTCT-CT---A-TTT  227

Query  238  TTGTTTTAGT-TCAGAAACTTTTGAGTCTTTGAGT-AAAAGATGTTGGAAGGGAAAGCGA  295
            |||||||| | | ||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct  228  TTGTTTTAATAT-AGAAA-TTTTGAGTCTTTGAGTAAAAAGATGTTGGAAGGGAAAGCGA  285

Query  296  AGGTGGAAGAGACAGACATGCCAGTGAAGATGCAAATGCAAGCAATGAGGATTGCTTCTC  355
            |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct  286  AGGTGGAAGAGACAGACATGCCTGTGAAGATGCAAATGCAAGCAATGAAGATTGCTTCTC  345

Query  356  AATCTCTCGATCTTTTTGATGTCTTTGACTCTATTTCTATCGCTGCTCACATCAAGAAGG  415
            |||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct  346  AATCTCTCGATCTTTTTGATGTCTTTGATTCTATATCCATCGCTGCTCACATCAAGAAGG  405

Query  416  AGTTTGATGAGAGATATGGAAGTGGATGGCAATGTGTTGTGGGAACCAATTTTGGGTGTT  475
            |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  406  AGTTCGATGAGAGATATGGAAGTGGATGGCAATGTGTCGTGGGAACCAATTTTGGGTGTT  465

Query  476  TCTTCACACATTCTAAAGGAACTTTCATCTATTTTCATTTGGGCAGTCTCAACTTCCTCA  535
            ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct  466  TCTTCACACATTCTAAAGGAACTTTCATCTATTTTCATTTGGGGACTCTCAACTTCCTCA  525

Query  536  TCTTCAAAGGCGCCACTGTTTAGTTTCT---AAACCACATCCATCtttt-tttctttttc  591
            ||||||||||||||||| ||||||||||   ||||||||||||| |||  |||| |||||
Sbjct  526  TCTTCAAAGGCGCCACTCTTTAGTTTCTTCTAAACCACATCCATGTTTCATTTCCTTTTC  585

Query  592  ttttAA  597
            ||||||
Sbjct  586  TTTTAA  591


> AT1G52240.1 | Symbols: ATROPGEF11, ROPGEF11, PIRF1 | RHO guanyl-nucleotide 
exchange factor 11 | chr1:19455766-19459574 REVERSE 
LENGTH=2046
Length=2046

 Score =  222 bits (120),  Expect = 3e-57
 Identities = 162/182 (89%), Gaps = 4/182 (2%)
 Strand=Plus/Plus

Query  273  AAAGATGTTGGAAGGGAAAGCGAA-GGTGGAAGAGACAGACATGCCAGTGAAGATGCAAA  331
            ||||||||||||||| ||||| || |||||||||  |||||||||||||||||||||| |
Sbjct  219  AAAGATGTTGGAAGGCAAAGC-AATGGTGGAAGATTCAGACATGCCAGTGAAGATGCAGA  277

Query  332  TGCAAGCAATGAGGA-TTGCTTCTCAATCTCTCGATCTTTTTGATGTCTTTGACTCTATT  390
            ||||||| ||| | | ||||||||||| |||| || ||||||||||||||||||| ||  
Sbjct  278  TGCAAGCTATG-GCATTTGCTTCTCAAGCTCTTGACCTTTTTGATGTCTTTGACTGTAAA  336

Query  391  TCTATCGCTGCTCACATCAAGAAGGAGTTTGATGAGAGATATGGAAGTGGATGGCAATGT  450
            || || |||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  337  TCCATTGCTGGTCACATCAAGAAGGAGTTTGATGAGAGATATGGGAGTGGATGGCAATGT  396

Query  451  GT  452
            ||
Sbjct  397  GT  398



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30140488200


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5