BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479075
Length=852
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16220.1 | Symbols: | Predicted eukaryotic LigT | chr3:5497... 1216 0.0
> AT3G16220.1 | Symbols: | Predicted eukaryotic LigT | chr3:5497597-5499235
FORWARD LENGTH=1057
Length=1057
Score = 1216 bits (658), Expect = 0.0
Identities = 773/827 (93%), Gaps = 13/827 (2%)
Strand=Plus/Plus
Query 37 TTTCGTGTATGAAAACTGAGGCGTGTCAAGGCTATGGAGAA--T---T--T-A-TGGAAT 87
|||||||||||||||||||||||| |||||||||||||||| | | | | ||| ||
Sbjct 84 TTTCGTGTATGAAAACTGAGGCGTATCAAGGCTATGGAGAATTTAAATCATAAGTGGGAT 143
Query 88 CGTTGTTCCTCTTCTCATCAAACTCCTCTTGCCTTCAAAGGCAATCAGAAGCAGACTGGA 147
|||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||
Sbjct 144 CGTTGTTCCTCTTCTCATCAAACTCCTCTTTCTTTCAAAGGCAATCAGAAGCAGATTGGA 203
Query 148 C-AGGCTCATAGAGAAGTGTTCACACATTTTGTGTCACTTCCATTAGCCATATACCCTGA 206
| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 204 CAAGG-TCAGAGAGAAGTGTTCACACATTTTGTGTCACTTCCATTAGCCATATACCCTGA 262
Query 207 GTTGAAGAAAAATATTGAGGCTTTTCAGAATTCTGTATTGGGTAACAATGATAAGAATCC 266
|||| ||||||||| |||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 263 CTTGACGAAAAATATCGAGGCTTTTCAGAATTCTGTATTGGGAAACAATGATAAGGATCC 322
Query 267 ATTGACGTTTCAGATTACTTTAGCTGAAATGGGAATCGAAAAATCGATCTTTGTTTCGCC 326
||||| |||||||| ||||||||||||||||||||| ||||||||||||||||| | ||
Sbjct 323 ATTGAAGTTTCAGAGTACTTTAGCTGAAATGGGAATAGAAAAATCGATCTTTGTAACTCC 382
Query 327 CAAAACTTTCCATTTGACTGTGGTTATGTTGAAGTTAGAGAACAATGAATCTGTGGTTAA 386
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 383 CAAAACTTTCCATTTGACTGTGGTTATGTTAAAGTTAGAGAACAATGAATCTGTGGTTAA 442
Query 387 AGCTCAGAATATCCTTAAGAGTATTTGTTCTAATGTGAGGCAAGCTTTGAAGGACCGACC 446
|||||||||||||||| ||||||||| |||||||||||||||||||||||| || ||||
Sbjct 443 AGCTCAGAATATCCTTCAGAGTATTTTTTCTAATGTGAGGCAAGCTTTGAAAAACAGACC 502
Query 447 TGTCTTCATAAGACTCAGGGGATTGGATTGTATGAATGGATCTTTAGACAAAACCCGCGT 506
|||||||||||||||||| |||||||| ||||||| |||||||||||||||||| |||||
Sbjct 503 TGTCTTCATAAGACTCAGAGGATTGGAATGTATGAGTGGATCTTTAGACAAAACTCGCGT 562
Query 507 TCTCTATGTTCCTGTTGAAGAAGTTGGGCATGAAGGTCGCCTGCTAAATGCTTGTCATGT 566
|||||||| |||||||||||||||||| | ||| || |||||||||||||||||||||||
Sbjct 563 TCTCTATGCTCCTGTTGAAGAAGTTGGTCGTGAGGGCCGCCTGCTAAATGCTTGTCATGT 622
Query 567 TATCATTGATGCATTTGAGAATGCTGGATTTGCTGGTAAAGACGCAAAGTCACGCTTGAA 626
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 623 TATCATTGATGCATTTGAGAATGTTGGATTTGCTGGTAAAGATGCAAAGTCACGCTTGAA 682
Query 627 GCTACACGCCACAG-TAATGAATGCAAGCTACAGAAAAGATAAAAGCAAAAAGATGGATA 685
|||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 683 GCTACACGCCAC-GTTGATGAATGCAAGCTACAGAAAAGATAAAAGCAAAAAGATGGATA 741
Query 686 CTTTTGATGCTCGAGAGATACACAAAGAGTTTGAGAACAAGGATTGGGGAACATATCTAA 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 742 CTTTTGATGCTCGAGAGATACACAAAGAGTTTGAGAACAAGGATTGGGGAACATATCTAA 801
Query 746 TCAGAGAAGCTCATATCTCACAACGCTATAAGTATGACCCCAATGGCTACTACCATTGCT 805
||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 802 TCAGAGAAGCTCACATCTCACAACGTTATAAGTATGACCCCAATGGCTACTTCCATTGCT 861
Query 806 GTGCTTCACTACCTTTTCCACATAAGTGACAGTGAAAACGATCAAAT 852
| ||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 862 GCGCTTCACTACCTTTTCCACATAAGTGACATTGACAACGATCAAAT 908
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41543639569
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5