BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479077
Length=1064
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16240.1 | Symbols: DELTA-TIP, TIP2;1, DELTA-TIP1, AQP1, ATT... 1615 0.0
> AT3G16240.1 | Symbols: DELTA-TIP, TIP2;1, DELTA-TIP1, AQP1, ATTIP2;1
| delta tonoplast integral protein | chr3:5505404-5507050
FORWARD LENGTH=1145
Length=1145
Score = 1615 bits (874), Expect = 0.0
Identities = 989/1044 (95%), Gaps = 10/1044 (1%)
Strand=Plus/Plus
Query 1 TATGCATGGATATATGAACAAAGGCTCCTATATAAAGAGAAGAGCATGCAAAAGGTCTTA 60
|||||||||||| |||||| | ||||||||||||||||| ||||| ||||||||||||
Sbjct 2 TATGCATGGATACATGAAC-GATACTCCTATATAAAGAGAACAGCATTCAAAAGGTCTTA 60
Query 61 TCATCTTCTTCACTAAGC--aaaaaaa-CCTTCAAAACATTTCCTTCTTCTTTCTTCTTC 117
|||||||||||||||| | ||||||| |||||||||||||||||| |||||||||||||
Sbjct 61 TCATCTTCTTCACTAAACAAAAAAAAACCCTTCAAAACATTTCCTTATTCTTTCTTCTTC 120
Query 118 ATCTACTACAATGGCTGGAGTTGCCTTTGGTTCTTTTGATGATTCCTTCAGCTTGGCTTC 177
|||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 121 ATCTACAACAATGGCTGGAGTTGCCTTTGGTTCCTTTGATGATTCATTCAGCTTGGCTTC 180
Query 178 GCTTAGAGCTTACCTTGCTGAGTTCATCTCCACTTTGCTCTTTGTTTTTGCTGGTGTTGG 237
|| ||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 181 TCTAAGAGCTTACCTCGCTGAGTTCATCTCCACTTTACTCTTTGTTTTCGCTGGTGTTGG 240
Query 238 CTCTGCCATTGCCTACGGTTCGAAGCTGACGTCGGACGCTGCTCTTGATACGCCGGGACT 297
|||||||||||||||| | | ||||||||||||||||||||||||||||| ||||||||
Sbjct 241 CTCTGCCATTGCCTAC-G--CAAAGCTGACGTCGGACGCTGCTCTTGATACACCGGGACT 297
Query 298 AGTGGCCATCGCGGTTTGCCATGGTTTTGCTCTCTTCGTAGCGGTTGCAATCGGAGCCAA 357
|||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||
Sbjct 298 AGTGGCCATCGCGGTTTGTCATGGTTTTGCTCTCTTCGTGGCCGTTGCAATCGGAGCCAA 357
Query 358 CATCTCCGGTGGCCATGTGAATCCAGCCGTCACTTTTGGTCTTGCTGTCGGTGGTCAAAT 417
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 358 CATCTCCGGTGGCCATGTGAACCCAGCCGTCACTTTTGGTCTTGCTGTCGGTGGTCAAAT 417
Query 418 CACAGTCATCACCGGAGTTTTCTACTGGATCGCTCAGCTTCTCGGCTCCACCGCCGCTTG 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 CACAGTCATCACCGGAGTTTTCTACTGGATCGCTCAGCTTCTCGGCTCCACCGCCGCTTG 477
Query 478 TTTCCTCCTTAAATACGTCACCGGTGGATTGGCGGTTCCAACCCACAGCGTTGGGGCTGG 537
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 478 TTTCCTCCTTAAATACGTCACCGGTGGATTGGCGGTTCCAACCCACAGCGTTGCGGCTGG 537
Query 538 ACTAGGAGCGTTAGAAGGAGTAGTGATGGAGATCATCATCACCTTTGCTTTGGTCTACAC 597
||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 538 ACTAGGATCGATAGAAGGAGTAGTGATGGAGATCATCATCACCTTCGCTTTGGTCTACAC 597
Query 598 CGTCTACGCCACCGCCGCTGATCCCAAGAAGGGTTCTCTCGGAACCATCGCTCCTCTCGC 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TGTCTACGCCACCGCCGCTGATCCCAAGAAGGGTTCTCTCGGAACCATCGCTCCTCTCGC 657
Query 658 CATCGGTCTTATCGTTGGTGCCAACATTCTCGCCGCTGGTCCATTCTCCGGTGGATCCAT 717
||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 658 CATTGGTCTTATCGTTGGTGCCAACATCCTCGCCGCCGGTCCATTCTCCGGTGGATCCAT 717
Query 718 GAACCCAGCACGTTCCTTTGGACCAGCTGTTGCGGCCGGAGACTTCTCTGGTCATTGGGT 777
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 718 GAACCCAGCACGTTCCTTTGGACCAGCTGTTGCTGCCGGAGACTTCTCTGGTCACTGGGT 777
Query 778 CTACTGGGTGGGACCACTCATCGGTGGTGGTCTTGCTGGACTTATCTACGGAAATGTCTT 837
||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 778 CTACTGGGTTGGACCACTCATCGGTGGTGGACTTGCCGGACTTATCTACGGAAATGTCTT 837
Query 838 CATGAGTTCTTCCGAACATGCTCCTCTTGCTTCTGCTGATTTCTAAGCAAACAAGTGATG 897
|||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 838 CATGGGTTCTTCCGAACATGTTCCTCTTGCTTCTGCTGATTTCTAAGGAAACAAGTGATG 897
Query 898 ATTCTTGATTCATGTTTCTGTGTTTGGTTACTTTGTCTCGATCTTTCTTGTTTTGTTTGG 957
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 898 ATTCTTGATTCATGTTTCTGTGTTTGGTTACTTTGCCTCGATCTTTCTTGTTTTGTTTGG 957
Query 958 ACTTTAATCCGGTTTCGTAGTAATTTTTATCCAATTTGTATGAATATCATTTAATGGATG 1017
| ||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 958 AGTTTGGTCCGGTTTCGTTGTAATTTTTATCCAATTTGTATGAATATTATTTAATGGATG 1017
Query 1018 GCTGTTTATTTGTTTATAAATTAA 1041
||||||| | ||| |||||||||
Sbjct 1018 GCTGTTT-TG-GTT-ATAAATTAA 1038
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52108165710
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5