BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479083
Length=1245
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16310.1 | Symbols: | mitotic phosphoprotein N' end (MPPN) ... 1816 0.0
> AT3G16310.1 | Symbols: | mitotic phosphoprotein N' end (MPPN)
family protein | chr3:5526414-5528602 REVERSE LENGTH=1341
Length=1341
Score = 1816 bits (983), Expect = 0.0
Identities = 1203/1299 (93%), Gaps = 55/1299 (4%)
Strand=Plus/Plus
Query 1 AGGCGCTTGAATTTTGCGATTTCAGAATCTTTAGTTTCTAGGGTTTCGCTTACCTTCCCT 60
|||||||||||||||||| |||||||||| || |||||||||||||| ||||||||||||
Sbjct 4 AGGCGCTTGAATTTTGCGTTTTCAGAATC-TTGGTTTCTAGGGTTTCACTTACCTTCCCT 62
Query 61 CCGCGCCATTGAGCTC-CGACCTGAGCTTTTCCGGGATTCCTAAAGCTGAAATTGAAACA 119
||||||| |||||||| | |||||||||| |||||||||||||||||||||||| |||||
Sbjct 63 CCGCGCCCTTGAGCTCTCTACCTGAGCTTCTCCGGGATTCCTAAAGCTGAAATTCAAACA 122
Query 120 CCTCCATTTGCATCTTC-AGGG-G--------------A--GA-TA-AAAATGAGTGCTG 159
||||||||| |||| || |||| | | || || |||||||||||||
Sbjct 123 CCTCCATTTTCATCCTCAAGGGAGATAAATAAAACTCTATTGAGTAGAAAATGAGTGCTG 182
Query 160 CAGCTCACAGGACTCCTAAATCAGGGAGGCAATCTTTGCTATTTCAAGATTTAGCTTCTC 219
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 183 CAGCACACAGGACTCCTAAATCAGGGAGGCAATCTCTGCTATTTCAAGATTTAGCTTCTC 242
Query 220 CTGTTTCAGCACGTAGAGGGAAATTCTCGAGTCCGGGACAGGCAGCTGCGGTATCTGCAC 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 CTGTTTCAGCACGTAGAGGGAAATTCTCGAGTCCGGGACAGGCAGCTGCGGTATCTGCAC 302
Query 280 TATGGCGTGAAAATTTCGGAGGATCGGATCTTCCACCACCTCCAATGTATACATTGGATG 339
|||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 303 TATGGCGTGAGAATTTCGGAGGATCTGATCTTCCACCACCTCCAATGTATACTTTGGATG 362
Query 340 ACCGGTCGGATTTCTCTCCTGAGTCTGGCATTGCAGACTACTCTGCGTCTCCAGATGCTA 399
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 363 ACCGGTCCGATTTCTCTCCTGAGTCTGGTATTGCAGACTACTCTGCGTCTCCAGATGCTA 422
Query 400 AATCTGATAGAAGAACGCCATTCCAGAGTTCTGGAAAGAATATTGTAACTCCCGGTAAAG 459
| ||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 423 AGTCTGACAGAAGAACACCATTCCAGAGTTCTGGAAAGAATATTGTAACTCCTGGTAAAG 482
Query 460 GAAAGTTGGAAACAAGCCCCTCGTTTTCTCTATTGAATGCACAACAGAGTCAGCAAGTTT 519
||||||||||| ||||||| || ||||||||| |||||||||||||||||||||||||||
Sbjct 483 GAAAGTTGGAAGCAAGCCCTTCTTTTTCTCTACTGAATGCACAACAGAGTCAGCAAGTTT 542
Query 520 CAGGGAGTCCGAGTTGGTGGTCGCAGTCAAAGGCAGGTAGTAGTATGGAGCAGGATGATA 579
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 543 CAGGGAGTCCGAGTTGGTGGTCGCAGTCAAAGGCAGGTAGTAGTACCGAGCAGGATGATA 602
Query 580 AAGGGAAGGGATCTCCTGTAGAAGGGGTGGTTCAGCCAGGTGCATTGGTCACTCTTCCGC 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 AAGGGAAGGGATCTCCTGTAGAAGGGGTGGTTCAGCCAGGTGCATTGGTCACTCTTCCGC 662
Query 640 CGCCAAGAGAAGTTGCTAGGCCAGAGGTTCAGAGGCAGATTATACCTACAGGAAACCTTG 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 CGCCAAGAGAAGTTGCTAGGCCAGAGGTTCAGAGGCAGATTATACCTACAGGAAACCTTG 722
Query 700 ATGAGGAAGAGTGGGTCACTGTCTATGGATTTTCTCCAGGTGATACAAATTTGGTACTAC 759
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 723 ATGAGGAAGAGTGGGTCACTGTCTATGGATTTTCTCCAGGTGATACAAATTTAGTACTAC 782
Query 760 GGGAGTTTGAAAAGTGTGGTATGGTCTTGAAACATGTTCCTGGTCCAAGGAATGCCAACT 819
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 783 GGGAGTTTGAAAAATGTGGTATGGTCTTGAAACATGTTCCTGGTCCAAGAAATGCCAACT 842
Query 820 GGATGCACATCCTCTACCAGAACCGGTCTGATGCACATAAGGCGCTCAACAAAGCCGGGA 879
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 843 GGATGCACATCCTCTACCAGAACCGGTCTGATGCACATAAGGCGCTGAACAAAGCAGGGA 902
Query 880 TGATGATAAACGGAGTGGTTATAGTAGGAGTGAAGCCAGTAGACCCTATACAGAAGCAAG 939
|||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||
Sbjct 903 TGATGATAAACGGAGTTGTAATAGTAGGAGTGAAGCCAGTAGACCCAATACAGAAGCAAG 962
Query 940 CTTTAAACGAGAGACTCAACAACCAAGGATTCATGCCTTTACCTCCACCATCATCCACTA 999
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CGTTAAACGAGAGACTCAACAACCAAGGATTCATGCCTTTACCTCCACCATCATCCACTA 1022
Query 1000 GAGACACTGCTCGACCCTTGTCTCGTCCTCAGTACTTGCAAAACGGCAGCGCTTTCTCCC 1059
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1023 GAAACACTGCTCGACCCCTGTCTCGTCCTCAGTACTTGCAAAACGGCAGCGCTTTCTCTC 1082
Query 1060 CTCAACCAAGTGGTGGCGCTATGGCCTCTCCGTCAAAGTCAATGGTCTCAAAGTTCTTTG 1119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 CTCAACCAAGTGGTGGCGCTATGGCCTCTCCGTCAAAGTCAATGGTCTCAAAGTTCTTTG 1142
Query 1120 ACTTGATGTTCGGAGTTTAAAAGCCACTTCAAT----T------A------C------AC 1157
||||||||||||| |||||||||| |||||||| | | | ||
Sbjct 1143 ACTTGATGTTCGGTGTTTAAAAGCTACTTCAATGGCATTTCCCGAATGATTCTTCTTTAC 1202
Query 1158 A--TAGTTTGAAGTTTTTGAG-G-AGAGTGGCAAAGTAAATCTTAG----T---CAAAAT 1206
| |||||||||||||||||| | |||||||| ||||||||||||| | ||||||
Sbjct 1203 ACATAGTTTGAAGTTTTTGAGAGCAGAGTGGCTAAGTAAATCTTAGAGCGTGGTCAAAAT 1262
Query 1207 TAAAAATTGTAAGAGGTGTTTCAAATTGTCTTTTGTATT 1245
|||||||||||||||||||||||||||||||||||||||
Sbjct 1263 TAAAAATTGTAAGAGGTGTTTCAAATTGTCTTTTGTATT 1301
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61194464355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5