BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479084
Length=2334
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16320.1 | Symbols: CDC27a | Tetratricopeptide repeat (TPR)-... 3666 0.0
> AT3G16320.1 | Symbols: CDC27a | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:5529534-5534663 FORWARD LENGTH=2352
Length=2352
Score = 3666 bits (1985), Expect = 0.0
Identities = 2227/2342 (95%), Gaps = 23/2342 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAATCTACTGGCGAATTGTGTCCAGAAAAACCTCAACCATTTTATGTACACCAAT 60
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 4 ATGGAGAATCTACTGGCGAATTGTGTCCAGAAAAACCTTAACCATTTTATGTTCACCAAT 63
Query 61 GCCATCTTCCTTTGCGAACGTCTTCTCGCCCAATTTCCCTCTGAGGTGAACCTGCAATTG 120
|| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 64 GCTATCTTCCTTTGCGAACTTCTTCTCGCCCAATTTCCATCTGAGGTGAACCTGCAATTG 123
Query 121 TTAGCTAGGTGTTACTTGAGTAACAGTCAAGCTTATAGTGCATATTATATCCTCAAAGGT 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 124 TTAGCCAGGTGTTACTTGAGTAACAGTCAAGCTTATAGTGCATATTATATCCTTAAAGGT 183
Query 181 TCAAAAATGCCTCAGTCTCGGTATTTATTTGCATTCTCATGCTTTAAGTTGGATCTTCTT 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 TCAAAAACGCCTCAGTCTCGGTATTTATTTGCATTCTCATGCTTTAAGTTGGATCTTCTT 243
Query 241 GGAGAGGCTGAAGCTGCATTGTTGCCCAGTGAAGATTATGTTGAAGAAGTTCCTGGTGGT 300
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 244 GGAGAGGCTGAAGCTGCATTGTTGCCCTGTGAAGATTATGCTGAAGAAGTTCCTGGTGGT 303
Query 301 GCAGCTGGGCATTATCTTCTTGGTCTTATATATAGACATTCTGGGAGGAAGAACAGTTCA 360
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 304 GCAGCTGGGCATTATCTTCTTGGTCTTATATATAGATATTCTGGGAGGAAGAACTGTTCA 363
Query 361 ATACAACAGTTTAGGATGGCATTGTCATTTGATCCATTGTGTTGGGAAGCATATGGAGAA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 ATACAACAGTTTAGGATGGCATTGTCATTTGATCCATTGTGTTGGGAAGCATATGGAGAA 423
Query 421 CTTTGTAGTTTAGGTGCCGCTGAAGAAGCCTCAACAGTTTTCGGGAATGTTGCTTCCCAG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 CTTTGTAGTTTAGGTGCCGCTGAAGAAGCCTCAACAGTTTTCGGGAATGTTGCTTCCCAG 483
Query 481 CGTCTTCAGATAACTTGTGTAGAACAAAGAATAAACTTCTCAGAAGGAGCAACCGTAGAC 540
|||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 484 CGTCTTCAGAAAACTTGTGTAGAACAAAGAATAAGCTTCTCAGAAGGAGCAACCATAGAC 543
Query 541 CAGCTTACAGATTCTGATAAGGCCTCAAAAGATACAAGTTTATGGCAAACAGAACACTTT 600
||| ||||||||||||||||||||| |||||||||| |||||| ||||||||||||| ||
Sbjct 544 CAGATTACAGATTCTGATAAGGCCTTAAAAGATACAGGTTTATCGCAAACAGAACACATT 603
Query 601 CCAGGAGAGAACCAAGAAGATCTGAAAATAAAGCAGCAGCCTGGAGCAGATATTCCGCCA 660
||||||||||||||| ||||||||||||| | |||||||||||||| | |||||| |||
Sbjct 604 CCAGGAGAGAACCAACAAGATCTGAAAATTATGCAGCAGCCTGGAG-A--TATTCCACCA 660
Query 661 GATACTGACAGGCAACTTAATACAAATGGATGGGACTTGAACACACCTTCTCCAGTGCTT 720
|||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 661 AATACTGACAGGCAACTTAGTACAAACGGATGGGACTTGAACACACCTTCTCCAGTGCTT 720
Query 721 TCGCAGGTAATGGATGCTCCACCGCCTCTGCTTCATAAGAATATGCGTCGTCCAGCAGTG 780
| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 721 TTACAGGTAATGGATGCTCTACCGCCTCTGCTTCTTAAGAATATGCGTCGTCCAGCAGTG 780
Query 781 GAAGGATCTTTGATGTCTGTACATGGAGTGCGTGCGCGTCGAAGAAACTTTTTTAATGAA 840
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 781 GAAGGATCTTTGATGTCTGTACATGGAGTGCGTGTGCGTCGAAGAAACTTTTTTAGTGAA 840
Query 841 GAATTGTCAGCAGAGGCTCCAGAAGAATCTGGGCGTCGCCGTAGTGCTAGAATAGCAGCA 900
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 841 GAATTGTCAGCAGAGGCTCAAGAAGAATCTGGGCGCCGCCGTAGTGCTAGAATAGCAGCA 900
Query 901 AGGAGAAAGATTCCTATGTCGCAGTCATTTGGAAAAGATTCCCATTGGTTACATCTTTCA 960
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AGGAAAAAGAATCCTATGTCGCAGTCATTTGGAAAAGATTCCCATTGGTTACATCTTTCA 960
Query 961 CCTTCTGAGACAAACTGTGCACCTTCTCTTTCCTCCG-TGATTGGAAAATGCAGAACCCA 1019
||||| ||| |||||| |||||||||||||||||| | |||||||||||||||||| |||
Sbjct 961 CCTTCCGAGTCAAACTATGCACCTTCTCTTTCCTC-GATGATTGGAAAATGCAGAATCCA 1019
Query 1020 AAGCAGCAAGGAAGCAACAACATCAGGCCAGTCTGTAAGTGACATTGGAAGCTCTGTTGA 1079
||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1020 AAGCAGCAAAGAAGCAACGACGTCAGGCCAGTCTGTAAGTGACATTGGAAGCTCTGTTGA 1079
Query 1080 TGATGAGGAAAAGTCAAATCCTAGTGAATCTTCCCCGGATCGTTTCAGCCTCATTTCTGG 1139
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1080 TGATGAGGAAAAGTCAAATCCTAGTGAATCTTCCCCGGATCGTTTCAGCCTTATTTCTGG 1139
Query 1140 AATTTCAGAAGTGCTAAACCTTCTGAAAATTCTTGGAGATGGCCATAGGCATTTACATAT 1199
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1140 AATTTCAGAAGTGCTAAGCCTTCTGAAAATTCTTGGAGATGGCCACAGGCATTTACATAT 1199
Query 1200 GTACAACTGTCAGGAAGCTTTGTTGGCATATCAAAAGCTATCTCAGAAACAATACGATAC 1259
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1200 GTACAAGTGTCAGGAAGCTTTGTTGGCATATCAAAAGCTATCTCAGAAACAATACAATAC 1259
Query 1260 ACACTGGGTTCTCTTGCAAGTTGGAAAAGCATATTTTGAGCTACAAGACTACTTCAACGC 1319
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 ACACTGGGTTCTCATGCAGGTTGGAAAAGCATATTTTGAGCTACAAGACTACTTCAACGC 1319
Query 1320 TGACTCTGTC-TTTACTCTTGCTCATCAAAAGTATCCTTATGCTTTGGAAGGAATGGATA 1378
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TGACTCT-TCCTTTACTCTTGCTCATCAAAAGTATCCTTATGCTTTGGAAGGAATGGATA 1378
Query 1379 CGTACTCCACTGTTCTTTATCACCTGAAAGAAGAGATGAGGTTGGGCTATCTGGCTCAGG 1438
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 CATACTCCACTGTTCTTTATCACCTGAAAGAAGAGATGAGGTTGGGCTATCTGGCTCAGG 1438
Query 1439 AGCTGATTTCTGTTGATCGCCTGTCTCCAGAATCCTGGTGTGCTGTAGGGAACTGTTACA 1498
| |||||||| |||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1439 AACTGATTTCAGTTGATCGCCTGTCTCCAGAATCCTGGTGTGCAGTTGGGAACTGTTACA 1498
Query 1499 GTTTGCGTAAGGATCATGATACTGCTCTCAAAATGTTTCAGAGAGCTATCCAACTGAATG 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 GTTTGCGTAAGGATCATGATACTGCTCTCAAAATGTTTCAGAGAGCTATCCAACTGAATG 1558
Query 1559 AAAGATTCACATACGCGCATACCCTTTGTGGTCACGAGTTTGCCGCATTGGAAGAATTTG 1618
||||||||||||| || |||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1559 AAAGATTCACATATGCACATACCCTTTGTGGCCACGAGTTTGCCGCATTGGAAGAATTCG 1618
Query 1619 AGGATGCAGAGAGATGCTACAGGAAGGCTCTGGGCATAGATACAAGACACTATAATGCAT 1678
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 1619 AGGATGCAGAGAGATGCTACCGGAAGGCTCTGGGCATAGATACGAGACACTATAATGCAT 1678
Query 1679 GGTACGGTCTTGGAATGACCTATCTTCATCGGGAGAAATTCGAGTTTGCGCAGCATCAAT 1738
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1679 GGTACGGTCTTGGAATGACCTATCTTCGTCAGGAGAAATTCGAGTTTGCGCAGCATCAAT 1738
Query 1739 TTCAACTGGCTCTCCAAATAAATCCAAGATCTTCAGTCATCATGTGTTACTATGGAATTG 1798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1739 TTCAACTGGCTCTCCAAATAAATCCAAGATCTTCAGTCATCATGTGTTACTATGGAATTG 1798
Query 1799 CTTTGCATGAGTCAAAGAGGAACGATGAGGCGTTAATGATGATGGAGAAGGCTGTACTCA 1858
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1799 CTTTGCATGAGTCAAAGAGAAACGATGAGGCGTTGATGATGATGGAGAAGGCTGTACTCA 1858
Query 1859 CTGATGTGAAGAATCCGCTCCCGAAGTACTACAAAGCT-ACCATATTAAACAGCCTCGGT 1917
|||||| |||||||||||||| ||||||||||| ||| || ||||||| |||||| |||
Sbjct 1859 CTGATGCAAAGAATCCGCTCCCCAAGTACTACAAGGCTCAC-ATATTAACCAGCCTAGGT 1917
Query 1918 GATTATCACAAAGC-C-GTTAAAGTCTTAGAAGAGCTCAAAGAATGTGCTCCTCAAGAGA 1975
|||||||||||||| | | ||||| |||||||||||||||||||||||||||||||| |
Sbjct 1918 GATTATCACAAAGCACAG--AAAGTTTTAGAAGAGCTCAAAGAATGTGCTCCTCAAGAAA 1975
Query 1976 GCAGTGTCCATGCGTTGCTTGGCAAAATATACAATCAGCTAAAGCAATACGACAAAGCCG 2035
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1976 GCAGTGTCCATGCATCGCTTGGCAAAATATACAATCAGCTAAAGCAATACGACAAAGCCG 2035
Query 2036 TGTTACATTTCGGTATTGCTTTGGATTTAAGCCCTTCTCCATCTGATGCTGTCAAGATAA 2095
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2036 TGTTACATTTCGGCATTGCTTTGGATTTAAGCCCTTCTCCATCTGATGCTGTCAAGATAA 2095
Query 2096 AGACTTACATGGAGAGGTTGATACTACCAGACGAACTGGCGACGGAGGAGAATTTGTAGA 2155
|| ||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||
Sbjct 2096 AGGCTTACATGGAGAGGTTGATACTACCAGACGAGCTGGTGACGGAGGAAAATTTGTAGA 2155
Query 2156 TTCATTGACCATTGTGCAGGTAATAAACCAAATTATGTTTCTCATATAACCCAAAGTCAT 2215
|| | | |||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 2156 TT--T--A---TTGTGCAGGTAATACACCAGATTATGTTTCTCATATAACCCAAAGTCAT 2208
Query 2216 CTTTAATTTT-CTCATCTTAAGATGAGTGTTATGGATTAACCCTAAAACAAAACTGATTA 2274
|| ||||||| |||||||| |||| ||| || |||| |||||||||||||||||||||||
Sbjct 2209 CTGTAATTTTTCTCATCTTTAGATCAGTCTTGTGGACTAACCCTAAAACAAAACTGATTA 2268
Query 2275 TATAAAATTAGAGGGTAAT-T-ACAGAAATTTGTATAGAGTTGGGTTGAATTTGCATTTC 2332
|||||| |||||||||||| | ||||||| ||||||||||||||||||||||| ||||||
Sbjct 2269 TATAAACTTAGAGGGTAATATTACAGAAAATTGTATAGAGTTGGGTTGAATTTTCATTTC 2328
Query 2333 TT 2334
||
Sbjct 2329 TT 2330
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115862857860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5