BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479085
Length=858
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16330.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1112 0.0
> AT3G16330.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G52140.1);
Has 109 Blast hits to 109 proteins in 16 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:5535196-5536063
FORWARD LENGTH=868
Length=868
Score = 1112 bits (602), Expect = 0.0
Identities = 792/879 (90%), Gaps = 32/879 (4%)
Strand=Plus/Plus
Query 1 TAACCAAATATCAAAGCCACCaaaaa-aaaa-aaaCACAAGAGTCTCATTATCTCTCTAA 58
||| ||||||||||||||| ||||| |||| ||| ||||||||||||||||||||||||
Sbjct 1 TAAGCAAATATCAAAGCCAAGAAAAACAAAACAAA-ACAAGAGTCTCATTATCTCTCTAA 59
Query 59 TTCCAAAGATGGAGAAGAATGTATCAACAAGCAAGAAGCTAGGGAACATTGTACGTTTTG 118
||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 60 TTCTAAAGATGGAGAAGAATATATCAATAAGCAAGAAGCTAGGGAACATTGTACGTTTTG 119
Query 119 TCTTGTACATGATACACAAAGGCATTTCAAAGCAAAAGCTCCTTGCCGACTTTAATGCCA 178
||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 120 TCTTGTACATGTTACACAAAGGCATTTCTAAGCAAAAGCTCCTAGCCGACTTTAATGCCA 179
Query 179 CTCTCAAACGCGGCAAGAATCTCATGTTCCACAACCGCCGCCGTTTCCCAGCCACCGCCT 238
|||||||||||||||||||||||||||||||||||||||||||| |||||| || |
Sbjct 180 CTCTCAAACGCGGCAAGAATCTCATGTTCCACAACCGCCGCCGTGTCCCAG-----GC-T 233
Query 239 CCGCTGTTGCGTCCCATTCGCAGAAAGAGTACGAGTTTAGCTGCAGCGACACTCCCAACT 298
| ||||||||||||||| | ||||| ||||||||||||||||||||||||||||| ||||
Sbjct 234 CGGCTGTTGCGTCCCATCCACAGAACGAGTACGAGTTTAGCTGCAGCGACACTCCTAACT 293
Query 299 ACATATTCCCCTTTAACATGGCCGCCTTCAAGAAGAAGAGCCACCACAACAGTCTTTTCT 358
||| |||||||| |||||||| ||||||||||||||||||||||||||||| || ||||
Sbjct 294 ACACGTTCCCCTTCAACATGGCTGCCTTCAAGAAGAAGAGCCACCACAACAGCCTCTTCT 353
Query 359 CGTGTGGTCACGCGCCACCGACCCTTGACGACGACACTTCCGTCTCCAGAGCCGTCCTAG 418
| |||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 354 CCTGTGGTCAAGCGCCACCGACCCTTGATGACGACACTTCCGTCTCCAGAGCCGTTCTAG 413
Query 419 AGCTGCTCAACAGCGGCGGAGATCATGATCAGGGAAGTAACACACCAGCTTTGTC-AGTC 477
|||||||||||||||| |||||||||||||||||||||||||| || ||||| || | |
Sbjct 414 AGCTGCTCAACAGCGGTGGAGATCATGATCAGGGAAGTAACACGCCGGCTTTTTCCATT- 472
Query 478 GAGGCCTTGACGGCGTTATCTCCTTACTTGCCGGTG-TTTGGACGGAGTACTCCGTCAGT 536
||||||||||||||||||||||| ||| |||||| | ||||||||||||||| |||| ||
Sbjct 473 GAGGCCTTGACGGCGTTATCTCCCTACCTGCCGG-GATTTGGACGGAGTACTTCGTCCGT 531
Query 537 GAGGCCTTTACGGGTAACGGACTCACCGTTTCCGTTACGGGAAGATGGTGACGTGTCTAA 596
||||||||||||||||||||||||||| || |||||| | ||||| ||||||||| ||||
Sbjct 532 GAGGCCTTTACGGGTAACGGACTCACCATTCCCGTTAAGAGAAGAGGGTGACGTGGCTAA 591
Query 597 CGGATACGTGGACAAAGCAGCGGATGAGTTTATAAAGAAGTTTTACAAGAACTTGAATCA 656
|||| | |||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 592 CGGACATGTGGACAAGGCAGCGGATGAGTTTATAAAGAAGTTTTACAAGAACTTGTATCA 651
Query 657 GCAAAAGAAGATGATCGAGTCCTCACCTAATTAAATCTCCTTTA----C-TTTC---T-- 706
||||||||||||||| ||||||||||||||||||||||||||| | |||| |
Sbjct 652 GCAAAAGAAGATGATTGAGTCCTCACCTAATTAAATCTCCTTTTTTGGCCTTTCCCCTTA 711
Query 707 ----CTCT-A-TCCCTCTTCCTAAATATTTCCTCTATTTTTGGCTGATTTAGTTCCGAAG 760
|||| | || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 GTTTCTCTCAATCTCTCTTCCTAAATATTTCCTCTATTTTTGGCTGATTTAGTTCCGAAG 771
Query 761 TTGTAATAATATTCTTGGTTGG-GCCTTGGAGGGTGGGGATTATTTTCTCATTTCTTGAT 819
|||||||||||||||||||||| | || |||||||||||||| |||||||||||||
Sbjct 772 TTGTAATAATATTCTTGGTTGGAGGA--GGCCGGTGGGGATTATTTCCTCATTTCTTGAT 829
Query 820 AAAATTAGATTATCACGAATAAAATATTATTCGGGTGGC 858
||||||| ||||||| |||||||||||||||| ||||||
Sbjct 830 AAAATTATATTATCATGAATAAAATATTATTCAGGTGGC 868
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41845044451
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5