BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479089
Length=1258
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16370.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 1917 0.0
> AT3G16370.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr3:5556710-5558589 FORWARD LENGTH=1518
Length=1518
Score = 1917 bits (1038), Expect = 0.0
Identities = 1209/1286 (94%), Gaps = 34/1286 (3%)
Strand=Plus/Plus
Query 1 AAAAAACAGGCTGGTTCAATATTTTTCCACGAATCAAAAATGGTTGGAGAAATATTGAAT 60
|||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 4 AAAACACAGGCTGGTTCAGT-TTTTTCCACGAATCAAAAATGGTTGGAGAAATATTGAAT 62
Query 61 -----------A-agagagagagag--aga--TTCAGAGTTGATACAACATTGAAGTAAA 104
| |||||||||||| ||| ||||||||||| ||||||||||||||||
Sbjct 63 AAGAGAGAGAGAGAGAGAGAGAGAGATAGAGTTTCAGAGTTGACACAACATTGAAGTAAA 122
Query 105 CTAAACTCCAAACCTCTTTATCTATGtatatatatatataAAC-C-TAAGTACATATAAT 162
||||||||| |||||||||||||||| | |||||||| |||| | |||||||||||||
Sbjct 123 CTAAACTCCTAACCTCTTTATCTATG--TGTATATATA-AAACTCAAAAGTACATATAAT 179
Query 163 CTTCACCATT----C--A--CACATACCAAAGCAAAAACATGGATCGTTGCACGTCTTCG 214
|||||||||| | | |||||||||||||||||||||||||||||||||||| |||
Sbjct 180 CTTCACCATTCACACATAGTCACATACCAAAGCAAAAACATGGATCGTTGCACGTCGTCG 239
Query 215 TTTTTGCTTCTCACGTTGGTCTCTACCTTGTCCTTTCTCCAAATCTCCTTTGCTCAACTT 274
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 240 TTTTTGCTTCTCACATTGGTCTCTACCTTGTCCATTCTCCAAATCTCCTTTGCTCAACTT 299
Query 275 GTTCCAGCTATCTTGACATTTGGTGACTCTGTAGTTGATGTCGGCAACAACAACTATCTT 334
|||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 300 GTTCCAGCAATCATGACATTCGGTGACTCTGTAGTTGATGTCGGCAACAACAACTATCTT 359
Query 335 CCGACCCTTTTCAGAGCTGATTATCCTCCTTATGGCCGTGATTTTGCTAACCACAAAGCC 394
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 360 CCGACCCTTTTCAGAGCTGATTATCCTCCTTATGGCCGTGATTTCGCTAACCACAAAGCC 419
Query 395 ACCGGCCGTTTCTGCAACGGCAAATTAGCTACTGATATCACCGCTGAGACTCTAGGCTTC 454
||||| ||||||||||||||||||||||| |||||||| || ||||||||| ||||||||
Sbjct 420 ACCGGTCGTTTCTGCAACGGCAAATTAGCCACTGATATAACTGCTGAGACTTTAGGCTTC 479
Query 455 ACTAAGTACCCACCAGCTTATCTAAGTCCTGAAGCTTCTGGTAAGAATCTTCTCATTGGT 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ACTAAGTACCCACCAGCTTATCTAAGTCCTGAAGCTTCTGGTAAGAATCTTCTCATTGGT 539
Query 515 GCTAATTTCGCTTCTGCAGCTTCAGGTTACGATGACAAAGCTGCTCTTATCAATCACGCG 574
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 540 GCTAATTTCGCTTCTGCAGCTTCAGGTTATGATGACAAAGCTGCTCTTCTCAATCACGCG 599
Query 575 ATCCCATTGTATCAGCAAGTAGAGTACTTCAAGGAATACAAGAGCAAGCTCATAAAAATT 634
||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 600 ATCCCGTTGTATCAGCAAGTAGAGTATTTCAAGGAATACAAGAGCAAGCTAATAAAAATT 659
Query 635 GCAGGAAGCAAAAAAGCTGATTCGATCATAAAGGGAGCAATCTGTCTCTTAAGTGCAGGA 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GCAGGAAGCAAAAAAGCTGATTCGATCATAAAGGGAGCAATCTGTCTCTTAAGTGCAGGA 719
Query 695 AGCAGTGATTTTGTTCAAAACTACTATGTGAATCCTCTGCTTTACAAAGTTTACACTGTT 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AGCAGTGATTTTGTTCAAAACTACTATGTGAATCCTCTGCTTTACAAAGTTTACACTGTT 779
Query 755 GATGCGTACGGATCTTTCCTTATCGATAACTTCTCTACATTTATCAAGCAAGTGTATG-G 813
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 780 GATGCATACGGATCTTTCCTTATCGATAACTTCTCTACATTTATCAAGCAAGTGTATGCG 839
Query 814 GATTGGAGCAAGGAAGATTGGTGTGACTTCTCTGCCTCCAACAGGATGTCTTCCAGCTGC 873
| |||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||
Sbjct 840 G-TTGGAGCAAGGAAGATCGGTGTGACATCTCTGCCTCCAACAGGATGTCTTCCCGCTGC 898
Query 874 AAGAACTCTTTTTGGTTTTCATGAAAAAGGCTGTGTTTCAAGACTCAACACAGATGCTCA 933
|||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 899 AAGAACCCTTTTCGGTTTCCATGAAAAAGGCTGTGTTTCAAGACTCAACACAGATGCTCA 958
Query 934 AAA-TTTCAACAAGAAGCTTAACGCAGCTGCTTCAAAGCTTCAGAAGCAGTATTCCGGTC 992
||| ||| ||||||||||||||||| ||||||||||||||||||||||| ||||||| ||
Sbjct 959 AAACTTT-AACAAGAAGCTTAACGCTGCTGCTTCAAAGCTTCAGAAGCAATATTCCGATC 1017
Query 993 TTAAGATTGTTGTCTTCGACATCTTCACTCCACTCTATGATCTTGTTCAGAACCCTTCCA 1052
|||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||
Sbjct 1018 TTAAGATTGTTGTCTTCGACATCTACTCTCCACTTTATGATCTTGTTCAGAACCCTTCCA 1077
Query 1053 AATCCGGATTTACGGAAGCAACCAAAGGATGTTGTGGAACAGGAACAGTCGAGACAACTT 1112
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 AATCCGGATTCACGGAAGCAACCAAAGGATGTTGTGGAACAGGAACAGTCGAGACAACTT 1137
Query 1113 CACTCTTGTGCAACCCGAAATCGTTAGGGACTTGCTCCAATGCTACTCAGTATGTGTTCT 1172
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1138 CACTCTTGTGCAACCCGAAATCGTTTGGGACATGCTCCAATGCTACTCAGTATGTGTTCT 1197
Query 1173 GGGATAGTGTTCATCCTTCTGAAGCTGCCAATGAGATTCTTGCCACTGCTCTAATTGGAC 1232
|||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1198 GGGACAGTGTGCATCCTTCTGAAGCTGCCAATGAGATTCTTGCCACTGCCCTAATTGGAC 1257
Query 1233 AGGGATTTTCTCTCCTCGGTTGATCT 1258
|||| |||||||||||||||||||||
Sbjct 1258 AGGGCTTTTCTCTCCTCGGTTGATCT 1283
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61847071440
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5