BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479105
Length=2342
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16460.1 | Symbols: | Mannose-binding lectin superfamily pr... 2615 0.0
AT1G75150.1 | Symbols: | unknown protein; Has 38228 Blast hits... 52.8 1e-05
> AT3G16460.1 | Symbols: | Mannose-binding lectin superfamily
protein | chr3:5592582-5595710 FORWARD LENGTH=2415
Length=2415
Score = 2615 bits (1416), Expect = 0.0
Identities = 2099/2412 (87%), Gaps = 113/2412 (5%)
Strand=Plus/Plus
Query 1 CTCTTTTATTCACACCTAATCTTCATCTTCATCTTCATC-TTCATTGTCTCTCTACGATC 59
|||| ||||||||||||||||||||||||||||||| | ||||| | |||||||||||
Sbjct 28 CTCTCTTATTCACACCTAATCTTCATCTTCATCTTC-GCATTCATAG--TCTCTACGATC 84
Query 60 AGATCGATAAAAGAAGTCAACAACGATGTCTTGGGACGATGGATCACACGCAAAGGTGAA 119
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 85 AGATAGATAAAAGAAGTCAACAACGATGTCTTGGGACGATGGATCACACGCAAAGGTGAA 144
Query 120 GAAAGTGGAGCTAACGTTCGATGACATCATTTACTCAATCAAGGTGACGTACGACGGAGC 179
||||||| ||||||| |||||||| ||||| ||||||||| |||| ||||||||||||||
Sbjct 145 GAAAGTGCAGCTAACCTTCGATGAGATCATCTACTCAATCCAGGTCACGTACGACGGAGC 204
Query 180 CACCGCTCTTCAATCCCAGCTTCGTGGCTCCGTTGGGCCCAAATCTGCCGAGTTCACTTT 239
|||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 205 CACCGCTCTTCAATCCCAGCTTCGCGGCTCCGTTGGTCCCAAATCTGCTGAGTTCACTTT 264
Query 240 GGCTCCGGACGAGTACATAACGGCCCTTTCTGCTTACGGCAAATCGTTG-GCTACGCAAG 298
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 265 GGCTCCGGACGAGTACATAACGGCCCTTTCTGCTTACGGCAAATCGTTGAG-TACGCAAG 323
Query 299 AAGTTATTACGGCGTTGACTTTCACAACCAACAAGGGGTCTTATGGACCTTACGGTAACA 358
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 324 AAGTTATTACGGCGTTGACTTTCACAACCAACAAGACTTCTTATGGACCTTACGGTACCA 383
Query 359 AATCTGGTTTCCAGATTTCTGCTCCTGAGGCCACCGGTAAACAGATCGCCGGTTTCCTTG 418
|||| |||||||||||||||||||| || |||||||||||||||||| ||||||||||||
Sbjct 384 AATCCGGTTTCCAGATTTCTGCTCCGGAAGCCACCGGTAAACAGATCTCCGGTTTCCTTG 443
Query 419 GCACCAGCGGCAATGTTCTCAACACCATCGACGTTCACTACGCTCCCATACCCAC---CG 475
| |||||||||||||||||||||||||||||||||||||| |||||||||| || |
Sbjct 444 GTACCAGCGGCAATGTTCTCAACACCATCGACGTTCACTATTCTCCCATACCTACTGGAG 503
Query 476 GAACCGGCTCAGGAGGAACTGGCACCGGAGGAACTGGTACCGAAGGAACTGGCACCGG-A 534
|||| ||| | ||||||||||||||| |||||||| ||| ||||||||||| || |
Sbjct 504 GAACTGGCACCGGAGGAACTGGCACC---GGAACTGGCACC---GGAACTGGCACTGGAA 557
Query 535 --GGAACTGGTACCGG-A--GGGAGTGGCACCGG-A--GGAACTGGTACCGGAGGGAGTG 586
|| ||||| ||||| | || | ||| || || | |||||||| |||||||| | ||
Sbjct 558 CTGGCACTGGCACCGGAACTGGCACTGGAACTGGCACTGGAACTGGCACCGGAGGAACTG 617
Query 587 GCACCGGAGGAACT-G-A-TGGCACCGGAGGAACTGGCACCGGAGGGACTGGTGGCACCG 643
||| | |||||| | | || || |||||||||||||| ||| || ||||||||
Sbjct 618 GCA-C--TGGAACTGGCACCGGTACTGGAGGAACTGGCACTGGA---AC---TGGCACCG 668
Query 644 GAGGAACTGG---TGGCACCGG-A--GGAACTGG---TGGCACCGG-A--GGAACTGGTA 691
|||||||||| ||| ||||| | || ||||| ||| ||||| | || ||||| |
Sbjct 669 GAGGAACTGGCACTGGAACCGGCACTGGGACTGGCACTGGAACCGGCACTGGGACTGGCA 728
Query 692 CCGG-A--GGAACTGGTA-GCACCGG-A--GGAACTGGTACCGGAGGGAGTGGCACCGG- 743
| || | || || || | | || || | ||||| || |||||||| | |||||| ||
Sbjct 729 CTGGAACCGGCACCGG-AGGAACTGGCACTGGAACCGGCACCGGAGGAACTGGCACTGGA 787
Query 744 A--GGAACTGGTGGCACCGG-A--GGAACTGGCACCGGAGGGACTGGCACCGG-A--GGA 795
| || ||| | || ||||| | || || ||||||||||| |||||||| || | |||
Sbjct 788 ACCGGCACT-G-GG-ACCGGCACTGGGACCGGCACCGGAGGAACTGGCACTGGAACCGGA 844
Query 796 ACTGGCACCGGTTCAGGTGCCCAGAAATTGGATGCACAAGG---CAGCACAGGAGGCACA 852
||||| |||||||||||||| ||||||||||| |||||||| ||| |||||||| |||
Sbjct 845 ACTGGTACCGGTTCAGGTGCTCAGAAATTGGAAGCACAAGGCAACAGTACAGGAGGTACA 904
Query 853 GCTTGGGACGATGGATCCAATTACGATGGCCTAACAAAAATATACGTAAGATCCGGTGGG 912
| ||||||||||||||| ||||||||||| | || || ||||||| ||| | |||||||
Sbjct 905 TCATGGGACGATGGATCCGATTACGATGGCGTGACCAAGATATACGCAAGCTACGGTGGG 964
Query 913 GACGGTATTCAATACGTCAAGTTCGACTATGTGAAAGATGGACaaaaaaaaGAAAGTGCC 972
|| |||||||||||||||||||||||||||||||||| |||| || |||| || | |
Sbjct 965 GAAGGTATTCAATACGTCAAGTTCGACTATGTGAAAGGTGGAGTAACAAAACAAGGAGTT 1024
Query 973 CTACACGGT---CAACAAAGTAG--AGGTTCAACAACAGAGTTTTTGATTAACCATCCAG 1027
||||||||| ||||||||||| | || ||| ||||||| ||||||||||||| |
Sbjct 1025 CTACACGGTAAACAACAAAGTAGACAAAATC--CAAGAGAGTTTGTGATTAACCATCCGG 1082
Query 1028 ATGAATATCTTGTTTCCGTTGAGGGTTGGTATGATAA-CATCATCCTAGGAATCCAATTC 1086
|||| ||||||||||| ||||||||||||||||| || | |||| ||||||||||| |||
Sbjct 1083 ATGAGTATCTTGTTTCTGTTGAGGGTTGGTATGA-AACCGTCATGCTAGGAATCCAGTTC 1141
Query 1087 AAAACCAACTTGAAAACTTCTGATTTCATCGGGTATGAATTT-G-A--TGGTAGTGGTAC 1142
||||| |||||||| |||| ||| ||| | ||| ||| | | | ||| || |||
Sbjct 1142 AAAACGAACTTGAACACTTATGAGGTCAGCATCTAT-CCTTTCGAACCTAGTACTGATAC 1200
Query 1143 TAAATTTACTCTTCAAGTTCAAGACAAGAAGATCAGTGGATTTCATGGTTTCGCCAGTAC 1202
||||||||||||||||||||||||||||||||||| ||||||||| |||||||| | |
Sbjct 1201 TAAATTTACTCTTCAAGTTCAAGACAAGAAGATCATTGGATTTCACGGTTTCGCGGGCAA 1260
Query 1203 CCATCTTAATTCCATTGGAGCTTATTTCGTTCCAAAATCTTCCACCACTAC---TCCTAC 1259
|||| ||||||||||||||||||| |||||||||||||| ||||||||| | |||| |
Sbjct 1261 CCATGTTAATTCCATTGGAGCTTACTTCGTTCCAAAATCCTCCACCACTCCTGTTCCTTC 1320
Query 1260 AGTCCCTGCGAAGAAGCTGACCGCAGAAGGTGGTGAGACTGGAGCTGTATGGGACGATGG 1319
| ||| | ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1321 A-ACCC--CTTTGAAGCTGACCGCAGAAGGTGGTGAGACAGGAGCTGTATGGGACGATGG 1377
Query 1320 TGCTCACGATGATGTTAAAAAAGTTTATGTAGGACAAGGACAAGATGGTGTTGGAGCTGT 1379
| |||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1378 TTCTCACGATGATGTTAAGAAAGTTTATGTAGGACAAGGCCAAGATGGTGTTGCAGCTGT 1437
Query 1380 CAAGTTTGAATACAAGAATGGTTCTCAGGTTGTTTTTGGAGATGAACATGGAAAGAAAAC 1439
||||||||||||||| ||||||||||||||||||||||||||||||| ||||| || |||
Sbjct 1438 CAAGTTTGAATACAAAAATGGTTCTCAGGTTGTTTTTGGAGATGAACGTGGAACGAGAAC 1497
Query 1440 ATTGCTAGGATACGAAGAGTTTGAGCTTGAATCAGATGAATACATAACATCCGTGGAAGG 1499
||||||||||| ||||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 1498 ATTGCTAGGATTCGAAGAGTTCGAGCTTGAATCAGACGAATATATAACATCCGTGGAAGG 1557
Query 1500 A-ACCTACGACAAAATCTTCGGGACCGATAG-TGCTGTAGTGACGATGCTGATTTTCAAG 1557
| | |||||| |||| ||| ||| | | | | |||||||||| | |||||||||||||
Sbjct 1558 ATA-CTACGAAAAAAACTT-TGGA--G-TTGATACTGTAGTGACAACGCTGATTTTCAAG 1612
Query 1558 ACTAGCAAGAACAAAACAGCTGGACCGTTTGGGCTTGAAGGTAGCACACCGTTTGTATTC 1617
||||||||||||||||||||||||||||||||| ||| | | ||||| ||||| ||||
Sbjct 1613 ACTAGCAAGAACAAAACAGCTGGACCGTTTGGGATTGTATCTGGCACAAAGTTTGAATTC 1672
Query 1618 AAGGAGGAAGGTTACAAGATCACTGGGTTCCACGGACGAGCTGGTGACTATATTAATGCT 1677
||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1673 AAGAAGGAAGGTTACAAGATCACTGGGTTCCACGGACGAGCTGGTGAGTATGTTAATGCT 1732
Query 1678 ATTGGAGCTTATTTAGCTCCATTAGGCACCACCCCTTTGACTCCTGCAACACAATCCCAA 1737
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1733 ATTGGAGCTTATTTAGCTCCATCAGGCACCACCCCTTTGACTCCTGCAACACAATCCCAA 1792
Query 1738 AAGCTAGAAGGAGCTGGTAGTGAGGGAGGAACTTTATGGGATGATGGTGCTTTCGACGGT 1797
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1793 AAGCTAGAAGGAGCTGGTAGTGAGGCAGGAACTTTATGGGATGATGGTGCTTTCGACGGT 1852
Query 1798 GTAA-GAAAGGTGTCTGTAGGACAAGCCCAAGATGGTATTGGAGCGGTCACGTTTGTGTA 1856
|||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1853 GTAAGGAAA-GTGTCTGTAGGACAAGCCCAAGATGGTATTGGAGCGGTCTCGTTTGTGTA 1911
Query 1857 TGACAAAGCAGCTCAGGTTGTAGTTGGAAAAGAACATGGAAAAACCACATTGCTTGGATT 1916
|||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1912 CGACAAAGCAGGTCAGGTTGTAGAAGGAAAAGAACATGGAAAACCCACATTGCTTGGATT 1971
Query 1917 TGAAGAGTTGGAGCTTGACTATCCAAGTGAATACATTACGGCAGTTGATGGCACCTACGA 1976
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1972 TGAAGAGTTTGAGCTTGACTATCCAAGTGAATACATCACGGCAGTTGATGGCACCTACGA 2031
Query 1977 TACAATCTTTGGGAGTGAAAAATCAGTCGTAACTATGCTTAGGTTCACGACTAATAAGCG 2036
| |||||||||||| || || || |||||| |||||||||||||||||||||||||||
Sbjct 2032 TGCAATCTTTGGGAATG---AACCAATCGTAAATATGCTTAGGTTCACGACTAATAAGCG 2088
Query 2037 AACATCTATGCCTTTTGG-ATTGGAAGCTGGCACACCCTTCGCATTCAAAAAGGAAGGCT 2095
| |||||| |||||||| || || |||||||||| |||||| |||||| ||||| || |
Sbjct 2089 AGTATCTATTCCTTTTGGAATAGG-AGCTGGCACAGCCTTCGAATTCAAGAAGGACGG-T 2146
Query 2096 -ACAAGATCGTTGGCTTCCATGGAAGAGCCGGTGATCTACTTCACAAATTTGGAGTCCAT 2154
| ||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2147 CAAAAGATAGTTGGTTTCCATGGAAGAGCTGGTGATCTACTTCACAAATTTGGAGTCCAT 2206
Query 2155 GTCGTGCCAATCACCAACTGATCATTGGAGATTTTAAATATCTTTTGATGATGGTTAACA 2214
|||| |||||| ||||| | || | |||||||||||| |||||||||||||| ||| |||
Sbjct 2207 GTCGCGCCAATAACCAAATAATTA-TGGAGATTTTAAGTATCTTTTGATGATAGTTTACA 2265
Query 2215 CACTTTGAATAAGCTGATTCTACTTTATTTCTCTCTGTTTGTTTACTGCTTCAGTGTTTT 2274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2266 CACTTTGAATAAGCTGATTCTACTTTATTTCTCTCTGTTTGTTTACTGCTTCAGTGTTTT 2325
Query 2275 AAATCTTCCCTTTGTGTT-GTTG-T-TC-TGTCTTTGATGGATTTTTTGTGATCCAATTT 2330
|| ||||| ||||||||| |||| | | |||||||||||||||||| ||||||| ||||
Sbjct 2326 AAGTCTTCTCTTTGTGTTTGTTGCTGTTGTGTCTTTGATGGATTTTT-GTGATCCGATTT 2384
Query 2331 AATAAAAGAAGT 2342
||||||||||||
Sbjct 2385 AATAAAAGAAGT 2396
> AT1G75150.1 | Symbols: | unknown protein; Has 38228 Blast hits
to 24529 proteins in 1168 species: Archae - 169; Bacteria
- 4103; Metazoa - 14594; Fungi - 5866; Plants - 1861; Viruses
- 317; Other Eukaryotes - 11318 (source: NCBI BLink). | chr1:28204387-28208573
REVERSE LENGTH=2738
Length=2738
Score = 52.8 bits (28), Expect = 1e-05
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Minus
Query 19 ATCTTCATCTTCATCTTCATCTTCATTG 46
||||||||||||||||||||||||||||
Sbjct 1654 ATCTTCATCTTCATCTTCATCTTCATTG 1627
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116264462220
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5