BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479107
Length=1607
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16470.1 | Symbols: JR1 | Mannose-binding lectin superfamily... 2320 0.0
> AT3G16470.1 | Symbols: JR1 | Mannose-binding lectin superfamily
protein | chr3:5595929-5598044 REVERSE LENGTH=1588
Length=1588
Score = 2320 bits (1256), Expect = 0.0
Identities = 1398/1467 (95%), Gaps = 8/1467 (1%)
Strand=Plus/Plus
Query 56 AAGGTTAAGAGAAGGAAAAAATGGCGAAAAAGTTGGAAGCGCAAGGTGGTCGTGGAGGAG 115
|||||| | |||| ||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 49 AAGGTT-A-AGAA-GAAAAGATGGCGAAAAAGTTGGAAGCTCAAGGTGGTCGTGGAGGAG 105
Query 116 AAGAATGGGACGATGGTGGTGCTTACGAAAACGTCAAGAAAGTCTATGTTGGTCAAGGTG 175
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 106 AAGAATGGGACGATGGTGGTGCTTACGAAAACGTCAAGAAAGTGTATGTTGGTCAAGGTG 165
Query 176 ATTCTGGTGTTGTTTACGTCAAGTTTGATTACGAGAAAGATGGCAAAATCGTATCACGTG 235
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 166 ATTCTGGTGTTGTTTACGTCAAGTTTGATTACGAGAAAGATGGAAAAATCGTATCACACG 225
Query 236 AACATGGCAAGCAGACACTACTTGGAACAGAGGAGTTTGTGCTTGATCCAGAAGATTACT 295
||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 226 AACATGGGAAGCAGACACTACTTGGAACAGAGGAGTTTGTGGTTGATCCAGAAGATTACA 285
Query 296 TAACATCAGTGAAAGTTTACTACGAGAAGCTCTTTGGATCACCGATAGAGATCGTTACGG 355
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 286 TAACATCAGTGAAAATTTACTACGAGAAGCTCTTTGGATCACCGATAGAGATCGTAACGG 345
Query 356 CTCTAATCTTTAAGACATTCAAGGGGAAAACTTCTCAGCCTTTTGGACTAACCTCTGGAG 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 CTCTAATCTTTAAGACATTCAAGGGGAAAACTTCTCAGCCTTTTGGACTAACCTCTGGAG 405
Query 416 AAGAAGCTGAGCTAGGAGGTGGCAAGATCGTTGGATTTCATGGAAGTTCAAGTGATCTGA 475
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 406 AAGAAGCTGAGCTAGGAGGTGGCAAAATCGTTGGATTTCATGGAAGTTCAAGTGATTTGA 465
Query 476 TCCATTCTGTAGGAGTTTATATAATTCCGTCAACTACGCCAG-TGACTCCGCCGGTATCA 534
|||||||||| |||||||||||||||||||| ||||| || | |||||||||||||||||
Sbjct 466 TCCATTCTGTTGGAGTTTATATAATTCCGTCGACTACACC-GCTGACTCCGCCGGTATCA 524
Query 535 GGTGGTCCGACCAAATTGGAAGCTCAAGGTGGTCGTGGAGGAGATGTATGGGACGATGGT 594
||||||| |||||||||||||||||||||||||||||| |||||||| |||||||| |||
Sbjct 525 GGTGGTCTGACCAAATTGGAAGCTCAAGGTGGTCGTGGTGGAGATGTTTGGGACGACGGT 584
Query 595 GGTGCTTACGACAATGTAAAGAAAGTTTATGTTGGACAAGGTGACTCTGGTGTGGTTTAT 654
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 585 GGTGCTTATGACAATGTAAAGAAAGTTTATGTTGGACAAGGTGACTCTGGTGTTGTTTAT 644
Query 655 GTCAAGTTTGATTACGAGAAAGATGGTAAGATTGTATCACTTGAACATGGGAAGCAGACA 714
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 645 GTCAAGTTTGATTACGAGAAAGATGGTAAGATTGTATCACTTGAACATGGGAAGCAAACA 704
Query 715 CTACTTGGAACAGAGGAGTTTGAGATTGATCCGGAAGACTACATCACATATGTGAAAGTT 774
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 705 CTACTTGGAACAGAGGAGTTTGAGATTGATCCTGAAGACTACATCACCTATGTGAAAGTT 764
Query 775 TACTACGAGAAACTTTTCGGGTCACCGATAGAGATTGTCACAGCTCTTATATTCAAGACA 834
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 765 TACTACGAGAAACTTTTCGGGTCACCGATAGAGATCGTCACAGCTCTTATATTCAAGACA 824
Query 835 TTCAAGGGGAAAACTTCTCAGCCGTTTGGACTAACCTCTGGAGAAGAAGCTGAGCTAGGA 894
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 TTCAAAGGAAAAACTTCTCAGCCGTTTGGACTAACCTCTGGAGAAGAAGCTGAGCTAGGA 884
Query 895 GGTGGCAAAATTGTTGGATTCCATGGAACTTCAAGCGATCTGATCCATTCTCTAGGAGCT 954
|| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 885 GGCGGCAAAATCGTTGGATTCCATGGAACTTCAAGTGATCTGATCCATTCTCTAGGAGCT 944
Query 955 TATATTGTTCCTTCGTCCACACCATTGACTCCTTCTTCCAATACTATTCCAGCACAAGGT 1014
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 TATATTATTCCTTCGTCCACACCATTGACTCCTTCTTCCAATACTATTCCAGCACAAGGT 1004
Query 1015 GGAGATGGTGGAGTTGCTTGGGATGATGGTGTTCACGACAGTGTCAAGAAGATATATGTT 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 GGAGATGGTGGAGTTGCTTGGGATGATGGTGTTCACGACAGTGTCAAGAAGATATATGTT 1064
Query 1075 GGACAAGGTGACTCTTGTGTCACATATTTCAAGGCTGACTATGAAAAGGCATCAAAGCCT 1134
|||||||||||||||||||| || |||||||| ||||||||||||||||| |||||||||
Sbjct 1065 GGACAAGGTGACTCTTGTGTGACCTATTTCAAAGCTGACTATGAAAAGGCTTCAAAGCCT 1124
Query 1135 GTCCTTGGAAGTGATCATGGAAAGATGTCATTGCTTGGAGCAGAGGAGTTTGTGCTTGGA 1194
|||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||
Sbjct 1125 GTCCTTGGAAGTGATCATGGGAAGAAGACATTGCTTGGAGCAGAGGAGTTTGTGCTTGGA 1184
Query 1195 CCAGATGAGTACATCACGGCTGTGTCGGGCTACTATGACAAGATTTTTAGTGTAGATGCG 1254
||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1185 CCAGATGAGTATGTCACTGCCGTGTCGGGCTACTATGACAAGATTTTTAGTGTAGATGCC 1244
Query 1255 CCGGCAATCGTCTCGCTTAAGTTCAAGACAAACAAGAGAACATCTATCCCGTATGGACTC 1314
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1245 CCGGCAATCGTCTCGCTTAAGTTTAAAACAAACAAGAGAACATCTATCCCGTATGGACTC 1304
Query 1315 GAGGGCGGAACTGAATTCGTGCTGGAGAAGAAAGACCACAAAATCGTTGGTTTCAATGGA 1374
||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1305 GAGGGAGGAACTGAATTCGTACTGGAGAAGAAAGACCACAAAATCGTTGGTTTCTATGGA 1364
Query 1375 CAAGCTGGTGACTATCTTTACAAACTTGGAGTCAATGTTGCGCCCATAGCTAACTGATGT 1434
||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1365 CAAGCTGGTGAATATCTTTACAAACTTGGAGTCAATGTTGCGCCCATAGCCAAATGATGT 1424
Query 1435 GAAAACAATCTC-ATATCCCCGGAATTCGAATAAGATTATGTTGTGAGTTTATGGAGTTG 1493
|||| |||||| ||||||| | |||| ||||||| |||||||||||||||||| |||||
Sbjct 1425 GAAACCAATCTGGATATCCCTGAAATTTGAATAAGGTTATGTTGTGAGTTTATGAAGTTG 1484
Query 1494 TGTGGTCTAATGTTGTATTTGGTTTTT 1520
|| | |||| |||||||||| ||||||
Sbjct 1485 TG-G-TCTAGTGTTGTATTTTGTTTTT 1509
Score = 536 bits (290), Expect = 2e-151
Identities = 393/443 (89%), Gaps = 5/443 (1%)
Strand=Plus/Plus
Query 547 AAA-TTGGAAGCTCAAGGTGGTCGTGGAGGAGATGTATGGGACGATGGTGGTGCTTACGA 605
||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 74 AAAGTTGGAAGCTCAAGGTGGTCGTGGAGGAGAAGAATGGGACGATGGTGGTGCTTACGA 133
Query 606 CAATGTAAAGAAAGTTTATGTTGGACAAGGTGACTCTGGTGTGGTTTATGTCAAGTTTGA 665
|| || |||||||| |||||||| |||||||| |||||||| ||||| |||||||||||
Sbjct 134 AAACGTCAAGAAAGTGTATGTTGGTCAAGGTGATTCTGGTGTTGTTTACGTCAAGTTTGA 193
Query 666 TTACGAGAAAGATGGTAAGATTGTATCACTTGAACATGGGAAGCAGACACTACTTGGAAC 725
||||||||||||||| || || ||||||| |||||||||||||||||||||||||||||
Sbjct 194 TTACGAGAAAGATGGAAAAATCGTATCACACGAACATGGGAAGCAGACACTACTTGGAAC 253
Query 726 AGAGGAGTTTGAGATTGATCCGGAAGACTACATCACAT-ATGTGAAAGTTTACTACGAGA 784
||||||||||| | ||||||| ||||| ||||| |||| | |||||| ||||||||||||
Sbjct 254 AGAGGAGTTTGTGGTTGATCCAGAAGATTACATAACATCA-GTGAAAATTTACTACGAGA 312
Query 785 AACT-TTTCGGGTCACCGATAGAGATTGTCACAGCTCTTATATTCAAGACATTCAAGGGG 843
| || ||| || |||||||||||||| || || ||||| || || |||||||||||||||
Sbjct 313 AGCTCTTT-GGATCACCGATAGAGATCGTAACGGCTCTAATCTTTAAGACATTCAAGGGG 371
Query 844 AAAACTTCTCAGCCGTTTGGACTAACCTCTGGAGAAGAAGCTGAGCTAGGAGGTGGCAAA 903
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 AAAACTTCTCAGCCTTTTGGACTAACCTCTGGAGAAGAAGCTGAGCTAGGAGGTGGCAAA 431
Query 904 ATTGTTGGATTCCATGGAACTTCAAGCGATCTGATCCATTCTCTAGGAGCTTATATTGTT 963
|| |||||||| ||||||| |||||| ||| ||||||||||| | |||| |||||| ||
Sbjct 432 ATCGTTGGATTTCATGGAAGTTCAAGTGATTTGATCCATTCTGTTGGAGTTTATATAATT 491
Query 964 CCTTCGTCCACACCATTGACTCC 986
|| ||| | ||||| |||||||
Sbjct 492 CCGTCGACTACACCGCTGACTCC 514
Score = 518 bits (280), Expect = 8e-146
Identities = 542/664 (82%), Gaps = 35/664 (5%)
Strand=Plus/Plus
Query 84 AAAGTTGGAAGCGCAAGGTGGTCGTGGAGGAGAAGAATGGGACGATGGTGGTGCTTACGA 143
||| |||||||| |||||||||||||| ||||| | |||||||| ||||||||||| ||
Sbjct 537 AAA-TTGGAAGCTCAAGGTGGTCGTGGTGGAGATGTTTGGGACGACGGTGGTGCTTATGA 595
Query 144 AAACGTCAAGAAAGTCTATGTTGGTCAAGGTGATTCTGGTGTTGTTTACGTCAAGTTTGA 203
|| || |||||||| |||||||| |||||||| |||||||||||||| |||||||||||
Sbjct 596 CAATGTAAAGAAAGTTTATGTTGGACAAGGTGACTCTGGTGTTGTTTATGTCAAGTTTGA 655
Query 204 TTACGAGAAAGATGGCAAAATCGTATCACGTGAACATGGCAAGCAGACACTACTTGGAAC 263
||||||||||||||| || || ||||||| ||||||||| ||||| ||||||||||||||
Sbjct 656 TTACGAGAAAGATGGTAAGATTGTATCACTTGAACATGGGAAGCAAACACTACTTGGAAC 715
Query 264 AGAGGAGTTTGTGCTTGATCCAGAAGATTACTTAACATCA-GTGAAAGTTTACTACGAGA 322
||||||||||| | ||||||| ||||| ||| | || | | |||||||||||||||||||
Sbjct 716 AGAGGAGTTTGAGATTGATCCTGAAGACTACATCACCT-ATGTGAAAGTTTACTACGAGA 774
Query 323 AGCTCTTT-GGATCACCGATAGAGATCGTTACGGCTCTAATCTTTAAGACATTCAAGGGG 381
| || ||| || ||||||||||||||||| || ||||| || || ||||||||||| ||
Sbjct 775 AACT-TTTCGGGTCACCGATAGAGATCGTCACAGCTCTTATATTCAAGACATTCAAAGGA 833
Query 382 AAAACTTCTCAGCCTTTTGGACTAACCTCTGGAGAAGAAGCTGAGCTAGGAGGTGGCAAG 441
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 834 AAAACTTCTCAGCCGTTTGGACTAACCTCTGGAGAAGAAGCTGAGCTAGGAGGCGGCAAA 893
Query 442 ATCGTTGGATTTCATGGAAGTTCAAGTGATCTGATCCATTCTGTAGGAGTTTATATAATT 501
||||||||||| ||||||| |||||||||||||||||||||| |||||| |||||| |||
Sbjct 894 ATCGTTGGATTCCATGGAACTTCAAGTGATCTGATCCATTCTCTAGGAGCTTATATTATT 953
Query 502 CCGTCAACTACGCCAGTGACTCCGCCGGTATCAGGTGGTCCGAC-CAAATTGGAAGCTCA 560
|| || | || ||| ||||||| | || | ||| | | | || | || ||
Sbjct 954 CCTTCGTCCACACCATTGACTCC-----T-TC---T--TCCAATACTA-TTCCA-GCACA 1000
Query 561 AGGTGGTCG-TGGAGGAGATG-TATGGGACGATGGTGGTGCTTACGACAATGTAAAGAAA 618
|||||| | ||| |||| || | ||||| ||||||| | | |||||| ||| |||||
Sbjct 1001 AGGTGGA-GATGGTGGAGTTGCT-TGGGATGATGGTGTT-C--ACGACAGTGTCAAGAA- 1054
Query 619 GTT-TATGTTGGACAAGGTGACTCTGGTGTGGTTTATGTCAA-GTTTGATTACGAGAAAG 676
| | ||||||||||||||||||||| ||||| ||| |||| | | || || || ||||
Sbjct 1055 GATATATGTTGGACAAGGTGACTCTTGTGTGACCTATTTCAAAGCT-GACTATGA-AAAG 1112
Query 677 A-TGGTAAGATTGTA-TC--ACTTGAACATGGGAAGCAGACACTACTTGGAACAGAGGAG 732
| ||| ||| | | ||| ||||||||| ||||| | |||||| ||||||||
Sbjct 1113 GCTTCAAAGCCTGTCCTTGGAAGTGATCATGGGAAGAAGACATTGCTTGGAGCAGAGGAG 1172
Query 733 TTTG 736
||||
Sbjct 1173 TTTG 1176
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79367061645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5