BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479110
Length=1379
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16490.1 | Symbols: IQD26 | IQ-domain 26 | chr3:5603900-5605... 1884 0.0
> AT3G16490.1 | Symbols: IQD26 | IQ-domain 26 | chr3:5603900-5605697
REVERSE LENGTH=1440
Length=1440
Score = 1884 bits (1020), Expect = 0.0
Identities = 1170/1242 (94%), Gaps = 11/1242 (1%)
Strand=Plus/Plus
Query 142 AAGATGGGAAGAGCTGCGAGATGGTTCAAGGGTATTTTCGGTATGAAGAAGAGCAAAGAG 201
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 206 AAGATGGGAAGAGCTGCGAGATGGTTCAAGGGTATTTTTGGTATGAAGAAGAGCAAAGAG 265
Query 202 AAAGAGAACCGTGTCTCCGGTGACTG-TGGAGGAGAAGCCGGTGGGTCTAACATTCACCG 260
||||||||| |||| ||||| ||| | |||||| ||||||||||| ||||||||||||||
Sbjct 266 AAAGAGAACTGTGTTTCCGGCGAC-GTTGGAGGTGAAGCCGGTGGTTCTAACATTCACCG 324
Query 261 GAAAGTTCTTCAAGCTGACTCCGTCTGGCTCAGAAGTTACCTTGCGGAAACAGACAAAGA 320
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 325 GAAAGTTCTCCAAGCTGACTCCGTCTGGCTCAGAACTTACCTTGCGGAAACAGACAAAGA 384
Query 321 ACAGAACAAACACGCGATTGCGGTTGCTGCCGCTACAGCCGCGGCCGCAGACGCAGCGGT 380
|||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 385 ACAGAACAAACACGCGATTGCGGTTGCTGCTGCTACAGCCGCGGCTGCTGACGCAGCGGT 444
Query 381 TGCAGCGGCTCAGGCTGCTGTTGCGGTCGTCAGGTTAACAAGTAACGGAAGAACCGGAGG 440
|||||||||||| |||||||| ||||| ||||||||||||||||||||||||| ||||||
Sbjct 445 TGCAGCGGCTCAAGCTGCTGTGGCGGTGGTCAGGTTAACAAGTAACGGAAGAAGCGGAGG 504
Query 441 ATATTCGGGGACCACAATGGAGCGGTGGGCGGCCGTGAAAATTCAATCAGTCTTCAAGGG 500
|||||| |||| | |||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 505 ATATTCCGGGAACGCAATGGAGCGGTGGGCCGCAGTGAAAATTCAATCAGTCTTCAAGGG 564
Query 501 CTATTTGGCAAGAAAAGCGTTAAGAGCTTTGAAAGGTTTAGTGAAGCTACAAGCTTTGGT 560
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 565 CTATTTGGCGAGAAAAGCGTTACGAGCTTTGAAAGGTTTAGTGAAGCTACAAGCTTTGGT 624
Query 561 AAGAGGTTACTTAGTCCGCAAACGCGCCGCCGAAACACTTCATAGCATGCAAGCTCTCAT 620
|||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 625 AAGAGGATACTTAGTCCGCAAACGCGCCGCCGAAACGCTGCATAGCATGCAAGCTCTCAT 684
Query 621 TAGGGCCCAAACCAGCGTCCGATCGCAACGCATCAACCGCAACAACTTGTTTAATCCTCG 680
||| || ||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 685 TAGAGCTCAAACCAGCGTCCGATCGCAACGCATCAACCGCAACAACATGTTTCATCCTCG 744
Query 681 ACACTCACTTGAGAGGTTTGATGATTCAAGAAGTGAAATCCATAGCAAGAGAATATCAAT 740
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 745 ACACTCACTTGAGAGGTTGGATGATTCAAGAAGTGAAATCCATAGCAAGAGAATATCAAT 804
Query 741 CTCTGTAGAGAAACAGAGT-A--ACAACAACAATGCGTACGATGAAACCAGTCCCAAGAT 797
||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||
Sbjct 805 CTCTGTAGAGAAACAGAGTAATCACAACAACAATGCGTACGATGAGACCAGTCCCAAGAT 864
Query 798 TGTGGAGATTGACACATACAAAACGAAATCAAGATCAAAGAGAATGAATGTTGCTGTATC 857
|||||||||||| || ||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 865 TGTGGAGATTGATACTTACAAGACGAAATCAAGATCAAAGAGAATGAATGTGGCTGTATC 924
Query 858 CGAATGTGGAGATGATTTCATCTATCAAGCCAAAGATTTCGAATGGAGTTTTCCGGGAGA 917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 925 CGAATGTGGAGATGATTTCATCTATCAAGCCAAAGATTTCGAATGGAGTTTTCCGGGAGA 984
Query 918 GAAATGCAAGTTTCCTACGGCTCAAAACACGCCGAGATTCTCTTCATCAACGGCTAATAA 977
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 985 GAAATGCAAGTTTCCTACGGCTCAAAACACGCCGAGATTCTCTTCATCAATGGCTAATAA 1044
Query 978 TCACTATTACTACACACCGCCTTCGCCGGCGAAAAGCGTTTGCAGAGACGCTTGTTTTAG 1037
| ||||||||||||| || || |||||||||||||| |||||||||||||||||||||||
Sbjct 1045 TAACTATTACTACACGCCCCCATCGCCGGCGAAAAGTGTTTGCAGAGACGCTTGTTTTAG 1104
Query 1038 GCCAAGTTATCCTGGTTTGATGACACCAAGCTATATGGCTAATACGCAGTCGTTTAAAGC 1097
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1105 GCCAAGTTATCCTGGTTTGATGACACCTAGCTATATGGCTAATACGCAGTCGTTTAAAGC 1164
Query 1098 TAAGGTACGTTCGCATAGTGCACCAAGACAACGTCCTGATAGGAAACGGTTGTCACTTGA 1157
||||||||||||||||||||||| ||||||||||||||||| ||| | |||||||||||
Sbjct 1165 CAAGGTACGTTCGCATAGTGCACCGAGACAACGTCCTGATAGAAAAAGATTGTCACTTGA 1224
Query 1158 TGAGATTATGGCCGCTAGAAGTAGCGTTAGCGGTGTTAGGATGGCGCAACCGCAACCGCA 1217
|||||||||||| ||||||||||||||||| ||||| ||||||| |||||| ||||| ||
Sbjct 1225 TGAGATTATGGCGGCTAGAAGTAGCGTTAGTGGTGTGAGGATGGTGCAACCACAACCACA 1284
Query 1218 AACGGAAACGCAAATGCAAATGCAGCAACAGAAACGCTCTCCTTGTTCGTATGATAATCA 1277
| || ||||||||| | |||||||||||||||||||||||||||||||||| ||||
Sbjct 1285 ACCGCAAACGCAAA--C----GCAGCAACAGAAACGCTCTCCTTGTTCGTATGATCATCA 1338
Query 1278 GTTTCGTCAGAACGAGAGTGATTTTAGATTCTATAATTAGTAAGAAACGTTATTTTCGTT 1337
||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 1339 GTTTCGTCAGAACGAGACTGATTTTAGATTCTATAATTAGTAAAAAACGTTATTTTCGTC 1398
Query 1338 CTTAAAGGAAATATCGTCATAGCCTTTGACTTTTCATTGATG 1379
||||||| |||||||||||||||||||||||||||||| |||
Sbjct 1399 CTTAAAGAAAATATCGTCATAGCCTTTGACTTTTCATTTATG 1440
Score = 215 bits (116), Expect = 1e-54
Identities = 124/128 (97%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 1 ttttttttAACAGTTCTCCTTTCTCAAAACATCACATTGTGTCTTCAGTTTCAGTGCCGT 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 18 TTTTTTTTTACAGTTCTCCTTTCTCAAAACATCACATTGTGTCTTCAGTTTCAGTGCCGT 77
Query 61 AAAATTTGTTTTCCTCTTCATTTTTTGCATACCAAAAGTTCTTTTGGGTATTTGTGATTT 120
||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 78 AAATTTTGTTTTCCTCTTCATTTTCTGCATACGAAAAGTTCTTTTGGGTATTTGTGATTT 137
Query 121 GTCATCTC 128
||||||||
Sbjct 138 GTCATCTC 145
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67921337385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5