BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg479110 Length=1379 Score E Sequences producing significant alignments: (Bits) Value AT3G16490.1 | Symbols: IQD26 | IQ-domain 26 | chr3:5603900-5605... 1884 0.0 > AT3G16490.1 | Symbols: IQD26 | IQ-domain 26 | chr3:5603900-5605697 REVERSE LENGTH=1440 Length=1440 Score = 1884 bits (1020), Expect = 0.0 Identities = 1170/1242 (94%), Gaps = 11/1242 (1%) Strand=Plus/Plus Query 142 AAGATGGGAAGAGCTGCGAGATGGTTCAAGGGTATTTTCGGTATGAAGAAGAGCAAAGAG 201 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 206 AAGATGGGAAGAGCTGCGAGATGGTTCAAGGGTATTTTTGGTATGAAGAAGAGCAAAGAG 265 Query 202 AAAGAGAACCGTGTCTCCGGTGACTG-TGGAGGAGAAGCCGGTGGGTCTAACATTCACCG 260 ||||||||| |||| ||||| ||| | |||||| ||||||||||| |||||||||||||| Sbjct 266 AAAGAGAACTGTGTTTCCGGCGAC-GTTGGAGGTGAAGCCGGTGGTTCTAACATTCACCG 324 Query 261 GAAAGTTCTTCAAGCTGACTCCGTCTGGCTCAGAAGTTACCTTGCGGAAACAGACAAAGA 320 ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 325 GAAAGTTCTCCAAGCTGACTCCGTCTGGCTCAGAACTTACCTTGCGGAAACAGACAAAGA 384 Query 321 ACAGAACAAACACGCGATTGCGGTTGCTGCCGCTACAGCCGCGGCCGCAGACGCAGCGGT 380 |||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||| Sbjct 385 ACAGAACAAACACGCGATTGCGGTTGCTGCTGCTACAGCCGCGGCTGCTGACGCAGCGGT 444 Query 381 TGCAGCGGCTCAGGCTGCTGTTGCGGTCGTCAGGTTAACAAGTAACGGAAGAACCGGAGG 440 |||||||||||| |||||||| ||||| ||||||||||||||||||||||||| |||||| Sbjct 445 TGCAGCGGCTCAAGCTGCTGTGGCGGTGGTCAGGTTAACAAGTAACGGAAGAAGCGGAGG 504 Query 441 ATATTCGGGGACCACAATGGAGCGGTGGGCGGCCGTGAAAATTCAATCAGTCTTCAAGGG 500 |||||| |||| | |||||||||||||||| || |||||||||||||||||||||||||| Sbjct 505 ATATTCCGGGAACGCAATGGAGCGGTGGGCCGCAGTGAAAATTCAATCAGTCTTCAAGGG 564 Query 501 CTATTTGGCAAGAAAAGCGTTAAGAGCTTTGAAAGGTTTAGTGAAGCTACAAGCTTTGGT 560 ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 565 CTATTTGGCGAGAAAAGCGTTACGAGCTTTGAAAGGTTTAGTGAAGCTACAAGCTTTGGT 624 Query 561 AAGAGGTTACTTAGTCCGCAAACGCGCCGCCGAAACACTTCATAGCATGCAAGCTCTCAT 620 |||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 625 AAGAGGATACTTAGTCCGCAAACGCGCCGCCGAAACGCTGCATAGCATGCAAGCTCTCAT 684 Query 621 TAGGGCCCAAACCAGCGTCCGATCGCAACGCATCAACCGCAACAACTTGTTTAATCCTCG 680 ||| || ||||||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 685 TAGAGCTCAAACCAGCGTCCGATCGCAACGCATCAACCGCAACAACATGTTTCATCCTCG 744 Query 681 ACACTCACTTGAGAGGTTTGATGATTCAAGAAGTGAAATCCATAGCAAGAGAATATCAAT 740 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 745 ACACTCACTTGAGAGGTTGGATGATTCAAGAAGTGAAATCCATAGCAAGAGAATATCAAT 804 Query 741 CTCTGTAGAGAAACAGAGT-A--ACAACAACAATGCGTACGATGAAACCAGTCCCAAGAT 797 ||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||| Sbjct 805 CTCTGTAGAGAAACAGAGTAATCACAACAACAATGCGTACGATGAGACCAGTCCCAAGAT 864 Query 798 TGTGGAGATTGACACATACAAAACGAAATCAAGATCAAAGAGAATGAATGTTGCTGTATC 857 |||||||||||| || ||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 865 TGTGGAGATTGATACTTACAAGACGAAATCAAGATCAAAGAGAATGAATGTGGCTGTATC 924 Query 858 CGAATGTGGAGATGATTTCATCTATCAAGCCAAAGATTTCGAATGGAGTTTTCCGGGAGA 917 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 925 CGAATGTGGAGATGATTTCATCTATCAAGCCAAAGATTTCGAATGGAGTTTTCCGGGAGA 984 Query 918 GAAATGCAAGTTTCCTACGGCTCAAAACACGCCGAGATTCTCTTCATCAACGGCTAATAA 977 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 985 GAAATGCAAGTTTCCTACGGCTCAAAACACGCCGAGATTCTCTTCATCAATGGCTAATAA 1044 Query 978 TCACTATTACTACACACCGCCTTCGCCGGCGAAAAGCGTTTGCAGAGACGCTTGTTTTAG 1037 | ||||||||||||| || || |||||||||||||| ||||||||||||||||||||||| Sbjct 1045 TAACTATTACTACACGCCCCCATCGCCGGCGAAAAGTGTTTGCAGAGACGCTTGTTTTAG 1104 Query 1038 GCCAAGTTATCCTGGTTTGATGACACCAAGCTATATGGCTAATACGCAGTCGTTTAAAGC 1097 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1105 GCCAAGTTATCCTGGTTTGATGACACCTAGCTATATGGCTAATACGCAGTCGTTTAAAGC 1164 Query 1098 TAAGGTACGTTCGCATAGTGCACCAAGACAACGTCCTGATAGGAAACGGTTGTCACTTGA 1157 ||||||||||||||||||||||| ||||||||||||||||| ||| | ||||||||||| Sbjct 1165 CAAGGTACGTTCGCATAGTGCACCGAGACAACGTCCTGATAGAAAAAGATTGTCACTTGA 1224 Query 1158 TGAGATTATGGCCGCTAGAAGTAGCGTTAGCGGTGTTAGGATGGCGCAACCGCAACCGCA 1217 |||||||||||| ||||||||||||||||| ||||| ||||||| |||||| ||||| || Sbjct 1225 TGAGATTATGGCGGCTAGAAGTAGCGTTAGTGGTGTGAGGATGGTGCAACCACAACCACA 1284 Query 1218 AACGGAAACGCAAATGCAAATGCAGCAACAGAAACGCTCTCCTTGTTCGTATGATAATCA 1277 | || ||||||||| | |||||||||||||||||||||||||||||||||| |||| Sbjct 1285 ACCGCAAACGCAAA--C----GCAGCAACAGAAACGCTCTCCTTGTTCGTATGATCATCA 1338 Query 1278 GTTTCGTCAGAACGAGAGTGATTTTAGATTCTATAATTAGTAAGAAACGTTATTTTCGTT 1337 ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| Sbjct 1339 GTTTCGTCAGAACGAGACTGATTTTAGATTCTATAATTAGTAAAAAACGTTATTTTCGTC 1398 Query 1338 CTTAAAGGAAATATCGTCATAGCCTTTGACTTTTCATTGATG 1379 ||||||| |||||||||||||||||||||||||||||| ||| Sbjct 1399 CTTAAAGAAAATATCGTCATAGCCTTTGACTTTTCATTTATG 1440 Score = 215 bits (116), Expect = 1e-54 Identities = 124/128 (97%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 1 ttttttttAACAGTTCTCCTTTCTCAAAACATCACATTGTGTCTTCAGTTTCAGTGCCGT 60 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 18 TTTTTTTTTACAGTTCTCCTTTCTCAAAACATCACATTGTGTCTTCAGTTTCAGTGCCGT 77 Query 61 AAAATTTGTTTTCCTCTTCATTTTTTGCATACCAAAAGTTCTTTTGGGTATTTGTGATTT 120 ||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| Sbjct 78 AAATTTTGTTTTCCTCTTCATTTTCTGCATACGAAAAGTTCTTTTGGGTATTTGTGATTT 137 Query 121 GTCATCTC 128 |||||||| Sbjct 138 GTCATCTC 145 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67921337385 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5