BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479112
Length=1247
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16510.1 | Symbols: | Calcium-dependent lipid-binding (CaLB... 819 0.0
> AT3G16510.1 | Symbols: | Calcium-dependent lipid-binding (CaLB
domain) family protein | chr3:5616992-5618294 REVERSE LENGTH=1303
Length=1303
Score = 819 bits (443), Expect = 0.0
Identities = 646/737 (88%), Gaps = 42/737 (6%)
Strand=Plus/Plus
Query 538 ACC-GGATTTACCGGCATCATCACCAC-CGGTTTACTCGAATCCGATGGATATACCGTCT 595
||| |||| ||||| ||||||| ||| | |||||| |||||||||||||||||||||||
Sbjct 582 ACCAGGATCCACCGGTATCATCATCACAC-GTTTACACGAATCCGATGGATATACCGTCT 640
Query 596 GATTACTCGTCGACGACGACGAATTATCCTCCG-C-C-ATCGTCTGAAGCAAGTTTCTAT 652
|||| ||||||| ||||||| |||||||||||| | | |||||||||||||| |||||||
Sbjct 641 GATTTCTCGTCGGCGACGACAAATTATCCTCCGCCGCAATCGTCTGAAGCAAATTTCTAT 700
Query 653 CCACCACTATCGTCTATTGGATATCCTCCGTCGTCACCGCCGCAAGATTATTCCGCACCG 712
|||||| |||| || |||||||||||||||||||| ||||||||| |||||||| |||||
Sbjct 701 CCACCATTATCATCGATTGGATATCCTCCGTCGTCTCCGCCGCAACATTATTCCTCACCG 760
Query 713 CCGTACCCGTACCCGAACCCGAATCCGTACCAGTACGATTCTCATTACCCGGAACAGCCA 772
||||||||||||||||| | ||||| |||||| |||||||||||||||||||||||
Sbjct 761 CCGTACCCGTACCCGAA--C----CCGTATCAGTACCATTCTCATTACCCGGAACAGCCA 814
Query 773 GCCACCGTTTATCCACCTCCGTCACCCTCTGCCTCGAATTTATATCCTCCGCCGTATTAC 832
| | | ||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 815 GTCGCTGTTTATCCACCTCCGCCACCCTCTGCATCGAATTTATATCCTCCGCCGTATTAC 874
Query 833 AGTACTTCTCCGACGCATCATCAATCCTATCCGCCGCCTCCTGGTCATTCATACCACCAA 892
|||||||||||| |||| ||||||||||||||||||||||| || ||||| | |||||||
Sbjct 875 AGTACTTCTCCGCCGCAGCATCAATCCTATCCGCCGCCTCCCGGCCATTCGTTCCACCAA 934
Query 893 ACGCAACCGTCACAGTCGTTTCACGGGTTCGCGCCTTCGTCTCCGCAGAATCAGCACGGG 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 935 ACGCAACCGTCACAGTCGTTTCACGGGTTCGCGCCTTCGTCTCCGCAGAATCAGCACGGG 994
Query 953 TGTGTTTATCCGCCGACGACGTCACCGGGATATGGATACTGCTGTCCGACGACGCAAGCG 1012
| || |||||||||| ||||||||||||||||||||||| | |||||||| || |||| |
Sbjct 995 TATGGTTATCCGCCGCCGACGTCACCGGGATATGGATACGGTTGTCCGACTACACAAGTG 1054
Query 1013 CCGCCGAAGAAGAATAATAA-AA-C-AGGGCTTGGA-----------A-TGGGAGCTGGG 1057
||||||||||| |||||||| || | ||||||||| | |||||||||||
Sbjct 1055 CCGCCGAAGAATAATAATAATAAACCAGGGCTTGGGCTTGGGCTTGGAGTGGGAGCTGGG 1114
Query 1058 CTTCTGGGAGGAGCATTGGGTGGGCTATTAATCGGCGATATAGTATCCGACATTTGCTTT 1117
|||||||||||||||||||||||||| |||||| | |||||||||||||||||| | |||
Sbjct 1115 CTTCTGGGAGGAGCATTGGGTGGGCTCTTAATCAGTGATATAGTATCCGACATTGGTTTT 1174
Query 1118 GATTTTTAATACTAGTATTTTTTATAACTTGT-AAGAATTAAGAAATTCCTTTTTGC-TG 1175
||||||||| || | ||| ||||||||| || |||||||||| |||||||| | ||
Sbjct 1175 GATTTTTAAC-CT--T-TTTA--ATAACTTGTGAA-AATTAAGAAACTCCTTTTTTCCTG 1227
Query 1176 CtttttttttGTT---AATTGTTTG-CGTGTTGTCGATAATTTACAAAATAA-ATTCTAC 1230
|||||||||| || ||||||||| |||||||||||||||| ||||||||| || ||||
Sbjct 1228 CTTTTTTTTTCTTTCTAATTGTTTGTCGTGTTGTCGATAATTAACAAAATAATAT-CTAC 1286
Query 1231 AATTTTGTTTACCACTT 1247
|||||||||||||||||
Sbjct 1287 AATTTTGTTTACCACTT 1303
Score = 808 bits (437), Expect = 0.0
Identities = 524/565 (93%), Gaps = 9/565 (2%)
Strand=Plus/Plus
Query 1 TTATTTTACGCGTAGATTCATTTAT-TTATCTATTTTTGACGGACA-CAATAATTATCTC 58
||||||||||||||||||| ||||| | |||||||||||||||| | ||||||| |||||
Sbjct 12 TTATTTTACGCGTAGATTCTTTTATATAATCTATTTTTGACGGA-ATCAATAATCATCTC 70
Query 59 CTTCTCTTTCGA-Cctctctct-ctctTAGCCATGGCGAATCTTACCTTAGAGCTCAACA 116
|||||||||||| || |||||| | ||||||||||||||||||||||||||||||||||
Sbjct 71 CTTCTCTTTCGATCC-CTCTCTGC-CTTAGCCATGGCGAATCTTACCTTAGAGCTCAACG 128
Query 117 TCTACTCTGCAAAAGATCTTGAAAATGTCAACCTCATCACCAAAATGGATGTATACGCCG 176
| ||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 129 TTTACTCAGCAAAAGATCTTGAAAATGTCAACCTCATCACAAAAATGGACGTATACGCCG 188
Query 177 TCGTTTGGATCACCGGCGATGATTCTCAGAAGAATCATAAGGAGAAAACCCCTATCGATC 236
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 189 TCGTTTGGATCACCGGCGATGATTCTCGGAAGAATCATAAGGAGAAAACCCCCATCGATC 248
Query 237 GCACCGGAGAATCTGAGCCCACTTGGAATCACACCGTCAAATTTTCCGTTGATCAAAGGT 296
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 249 GCACCGGAGAATCTGAGCCTACTTGGAATCACACCGTCAAATTTTCCGTTGATCAAAGGT 308
Query 297 TAGCCCTCGAAGGCCGTTTGACCCTCGTCGTGAAATTGGTCTGCGATCGGATCTTCGGCG 356
|||| | |||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 309 TAGCACACGAAGGTCGTTTAACCCTCGTCGTGAAATTGGTCTGCGATCGGATCTTCGGCG 368
Query 357 ATAAAGATCTCGGAGAAGTCCAAGTCCCTGTTCTTGGGCTTCTTCATGGTTCTTCGTCGC 416
| |||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 369 ACAAAGATCTCGGAGAGGTCCAAGTCCCGGTTCTTGAGCTTCTTCATGGTTCTTCGTCGC 428
Query 417 CGTCAAT-TAACGGTAACGGTCAGGGGATGATGAGATTTGTGACGTATCAGGTGAAAACT 475
||||| | ||||||| ||||||||||||||||||||||||| ||||||||||| | ||||
Sbjct 429 CGTCA-TCTAACGGTGACGGTCAGGGGATGATGAGATTTGTTACGTATCAGGTCAGAACT 487
Query 476 CCGTTTGGGAAAGGTCAAGGCTCGTTGACTTTTTCGTACCGGTTCGATACGCCGTCGTTT 535
|||||||| ||||||||||||||||||||||||||||||||||||||| | ||| | |||
Sbjct 488 CCGTTTGGAAAAGGTCAAGGCTCGTTGACTTTTTCGTACCGGTTCGATTCACCGACATTT 547
Query 536 AAACCGGATTTACCGGCATCATCAC 560
||||||||| ||||| |||||||
Sbjct 548 AAACCGGATCAACCGGTTTCATCAC 572
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61294865445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5