BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479117
Length=1485
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16540.1 | Symbols: DegP11 | DegP protease 11 | chr3:5626290... 1086 0.0
AT3G16550.1 | Symbols: DEGP12 | DEGP protease 12 | chr3:5629920... 411 1e-113
AT1G65630.1 | Symbols: DegP3 | DegP protease 3 | chr1:24406542-... 145 1e-33
> AT3G16540.1 | Symbols: DegP11 | DegP protease 11 | chr3:5626290-5628857
REVERSE LENGTH=1668
Length=1668
Score = 1086 bits (588), Expect = 0.0
Identities = 719/777 (93%), Gaps = 30/777 (4%)
Strand=Plus/Plus
Query 709 CAATCTCTCGAAAATGTTCAAATCCGTAATCATTACAAGATGAGCCATGAAATGACAGGA 768
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 922 CAATCTCTCGAAAATGTTCAAATCCGTAATCATTTCAAGATGAGCCATGAAATGACAGGA 981
Query 769 ATTCTTATAAACAAAATAAACTCGTCGTCGGGGGCTTACAAAATTTTGAGAAAAGACGAC 828
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 982 ATTCTTATTAACAAAATAAACTCGTCGTCGGGGGCTTACAAAATTTTGAGAAAAGACGAC 1041
Query 829 ATTATTCTTGCAATTGATGGTGTTCCAATAGGAAATGATGAGAAAGTTCCTTTCCAAAAC 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1042 ATTATTCTTGCAATTGATGGTGTTCCAATAGGAAATGATGAGAAAGTTCCTTTCCAAAAC 1101
Query 889 AAAAGACGGATAGATTTCAGCTACTTGGTTTCTATGAAGAAACCAGGTGAAAAAGCCTTA 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1102 AAAAGACGGATAGATTTCAGCTACTTGGTTTCTATGAAGAAACCAGGTGAAAAAGCCTTA 1161
Query 949 GTTAAAGTTTTACGAAACGGAAAAGAGTATGAAACTTCTAACATCAATGCCACAATCTCT 1008
|||||||||||||||||||||||||||||||| | | || |||| | | | || | |
Sbjct 1162 GTTAAAGTTTTACGAAACGGAAAAGAGTATGAG--TAC-AATATCAGT-CTAAAA-C-CG 1215
Query 1009 CGTATGATTAGCAAAATTAATTCAGTGAAACCAAACTTTACAGTGCAACAATTTTATAAT 1068
|| || | |||| || | ||||| ||| || |||| | || | ||
Sbjct 1216 -GT--GAA-ACCAAACTTTA--CAGTGCAAC-AAT-TTTA---T--AA---TGTT----- 1254
Query 1069 CTTCCAAGTTACTACATATTTGGGGGTTTTGTTTTTGTGCCTCTCACTAAAACATATCTT 1128
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 C--C-AAGTTACTACATATTTGGGGGTTTTGTTTTTGTGCCTCTCACTAAAACATATCTT 1311
Query 1129 GATAGTGAACATCACCAAATATTAGCAGATGACATCAACGAAGGATACCAAAGTTTAGAT 1188
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1312 GATAGTGAACATCACCAAAGATTAGCAGATGACATCAACGAAGGATACCAAAGTTTATAT 1371
Query 1189 GGTGCTCAGGTGGAGAAAGTGAACGGAGTGGAAGTAAAGAATCTCAAGCATCTATGCGAG 1248
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1372 GGTGCTCAGGTGGAGAAAGTGAACGGAGTGGAAGTAAAGAATCTTAAGCATCTATGCGAG 1431
Query 1249 CTAATAGAGGAATGTAGCACTGAAGATTTGAGGCTGGACTTTAAAAATCATAAAGTTTTG 1308
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 1432 CTAATAGAGGAATGTAGCACCGAAGATTTGAGGCTGGAGTTTAAAAATCATAAGGTTTTG 1491
Query 1309 GTCCTCAACTATGAAACTGCTAAAAAAGCAACGTTACAAATCTTGGAACGTCACAAAATA 1368
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1492 GTCCTCAACTATGAATCTGCTAAAAAGGCAACGTTACAAATCTTGGAACGTCACAAAATA 1551
Query 1369 AAGTCGTTCATATCTAAGGACATTTGTCTTCCTATGTTGCTTGATGATCCGTTCAAAGAC 1428
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1552 AAGTCGGTCATATCAAAGGACATTTGTCTTCCTATGTTGCTTGATGATCCGTTCAAAGAC 1611
Query 1429 AATACGATAAACCTTCTTCCTTGGAGTGTTCTTCCTTTGATGTTTGATTTTTCCTAA 1485
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1612 AATAAGATCAACCTTCTTCCTTGGAGTGTTCTTCCTTTGATGTTTGATTTTTCCTAA 1668
Score = 887 bits (480), Expect = 0.0
Identities = 596/648 (92%), Gaps = 24/648 (4%)
Strand=Plus/Plus
Query 1 ATGGTTTTCCGGCCGTGTGTTGATATGGTGGGGTGGTACACGAGAGCTCGGGTTCCTGGT 60
||| ||||||||||||||||| ||| |||||| ||||| ||||||||||||||||||||
Sbjct 1 ATGTTTTTCCGGCCGTGTGTTCATACGGTGGGCCGGTACTCGAGAGCTCGGGTTCCTGGT 60
Query 61 TTACTCTCTTCTCTTTTCTTTTACCGAAGTTGCAATAATGTACTGACCAATTCACTGCCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTACTCTCTTCTCTTTTCTTTTACCGAAGTTGCAATAATGTACTGACCAATTCACTGCCA 120
Query 121 ACGGTAACAACTGCCGGCCGAGTTTCCAGATATG-ACTATCTATGCAGGAGGAGCA-CA- 177
||||||||||| |||||||||||||||||||| | | ||| ||||||||||||||| ||
Sbjct 121 ACGGTAACAACGGCCGGCCGAGTTTCCAGATACGGA-TATATATGCAGGAGGAGCAGCAC 179
Query 178 -TCAGCAGCAGAGAGGGGTGTAGTT-CTTCCATTTGCGTTAACTGGCCGAAGAAAGATCC 235
|||||||| ||||||||||| ||| |||||||||||||||||| |||||||||| ||||
Sbjct 180 ATCAGCAGCGGAGAGGGGTGT-GTTTCTTCCATTTGCGTTAACTTGCCGAAGAAATATCC 238
Query 236 ATTCAATACATGAAGATGCGAAGAAGCTAGAACGGTGGAAGAAAATAGAAGAAAGTCGTC 295
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 239 ACTCAATACATGAAGATGAGAAGAAGCTAGAACGGTGGAAGAAAATAGAAGAAAGTCATC 298
Query 296 CTGTTGATGAATTGGTGCTGGATTCGGTTGTAGAGGTATTCTCTGACTCTACCGGGTATA 355
|| ||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||
Sbjct 299 CTCTTGATGAATTGGTGCTGGATTCGGTTGTAAAGGTATTCTCTAACTCTACCGAGTATA 358
Query 356 GAAAATCCAAACCTTGGCAGACTTGTT-ACAAGAAAGAGCGAGATAAGCTTGAGAGAAAG 414
| ||||||||||||||| ||||| || || | ||| | | | | | || | |
Sbjct 359 GCAAATCCAAACCTTGGAAGACTC-TTGACCA-AAA-ATC-A--TC--C---AG-G---G 403
Query 415 GGCACTGGATTTGCAATCGCGGGAAAGAAAATTCTTACGAACGCTCATGTGGTGATGGCT 474
| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 404 G-CACTGGATTTGCAATCGCCGGAAGGAAAATTCTTACGAACGCTCATGTGGTGATGGCT 462
Query 475 ATGAATGATCACACATTCGTGGATGTCAAAAGACATGGCTCTCAAATCAAATACAAAGCA 534
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 463 ATGAATGATCACACATTCGTGGACGTCAAAAGACATGGCTCTCAAATCAAATACAAAGCA 522
Query 535 AAAGTTCAAAAGATTTCACATGAATGTGATTTGGCCATCTTGGAGATCGATAGTGACGAG 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 AAAGTTCAAAAGATTTCACATGAATGTGATTTGGCCATCTTGGAGATCGATAGTGACGAG 582
Query 595 TTTTGGAAGGGTATGAATCCCTTGGAGCTTGGAGACATACCACCTCTC 642
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 TTTTGGAAGGGTATGAATCCCTTGGAGCTTGGAGACATACCACCTCTC 630
Score = 58.4 bits (31), Expect = 2e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 642 CGGTGATTATGGGAAACAAAGTCGTTGGTGT 672
|||||||||||||||||||||||||||||||
Sbjct 782 CGGTGATTATGGGAAACAAAGTCGTTGGTGT 812
> AT3G16550.1 | Symbols: DEGP12 | DEGP protease 12 | chr3:5629920-5632417
REVERSE LENGTH=1476
Length=1476
Score = 411 bits (222), Expect = 1e-113
Identities = 378/448 (84%), Gaps = 32/448 (7%)
Strand=Plus/Plus
Query 199 GTTCTTCCATTTGCGTTAACTGGCCGAAGAAAGATCCATTCAATACATGAAGATGCGAAG 258
|||||||| ||||| |||||| || ||||||||||||| | | |||| || | || |
Sbjct 67 GTTCTTCCGTTTGCATTAACTCGCGGAAGAAAGATCCA-T--A-CCATGTCGAAG-GATG 121
Query 259 AAGCTAGAACGGTGGAAGAAAAT-AGAAGAAAGTCGTCCTGTTGATGAATTGGTGCTGGA 317
|| ||| ||||||||||||| |||| |||||| ||| |||||||||||| || ||||
Sbjct 122 -AG---GAATGGTGGAAGAAAATAAGAA-AAAGTCCTCCCGTTGATGAATTGATGTTGGA 176
Query 318 TTCGGTTGTAGAGGTATTCTCTGACTCTACCGGGTATAG-AAAATCCAAACCTTGGCAGA 376
||||| |||||||| ||| ||||||||||| |||||| ||| | ||||||||||||||
Sbjct 177 GTCGGTGGTAGAGGTCTTCACTGACTCTACCAAGTATAGCAAAGT-CAAACCTTGGCAGA 235
Query 377 CTTGTTACAAGAAAGAGCGAGATAAGCTTGAGAGAAAGGGCACTGGATTTGCAATCGCGG 436
| | || || | | || || | | | | |||| ||||||||||||||||||
Sbjct 236 C-TCTT--AA-CCA-A--GA-AT---CAT-A-TG--GGGGCTCTGGATTTGCAATCGCGG 280
Query 437 GAAAGAAAATTCTTACGAACGCTCATGTGGTG-ATGGCTATGAATGATCACACATTCGTG 495
|||||||||||||||||||||||||||||||| | || ||||||||||||| |||||||
Sbjct 281 GAAAGAAAATTCTTACGAACGCTCATGTGGTGGAGGGG-ATGAATGATCACATATTCGTG 339
Query 496 GATGTCAAAAGACATGGCTCTCAAATCAAATACAAAGCAAAAGTTCAAAAGATTTCACAT 555
| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 340 CACGTCAAAAGACATGGCTCTCAAGTCAAATACAAAGCAAAAGTTCAAAAGATTGCACAT 399
Query 556 GAATGTGATTTGGCCATCTTGGAGATCGATAGTGACGAGTTTTGGAAGGGTATGAATCCC 615
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 400 GAGTGTGATTTGGCCATCTTGGAGATCGATAGCGACGAGTTTTGGAAGGGTATGAATCCC 459
Query 616 TTGGAGCTT-GGAGACATACCACCTCTC 642
|||||| || ||||||||||| ||||||
Sbjct 460 TTGGAG-TTCGGAGACATACCGCCTCTC 486
Score = 187 bits (101), Expect = 2e-46
Identities = 125/137 (91%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 719 AAAATGTTCAAATCCGTAATCATTACAAGATGAGCCATGAAATGACAGGAATTCTTATAA 778
|||||| |||||| |||||||||| |||||||||| ||||| |||||||||||||||||
Sbjct 821 AAAATGCTCAAATTCGTAATCATTTTAAGATGAGCCCTGAAACGACAGGAATTCTTATAA 880
Query 779 ACAAAATAAACTCGTCGTCGGGGGCTTACAAAATTTTGAGAAAAGACGACATTATTCTTG 838
||||||||||||| |||||||||||| |||||||| |||||||||| ||||| ||||| |
Sbjct 881 ACAAAATAAACTCATCGTCGGGGGCTCACAAAATTCTGAGAAAAGATGACATCATTCTCG 940
Query 839 CAATTGATGGTGTTCCA 855
|||||||||||||||||
Sbjct 941 CAATTGATGGTGTTCCA 957
> AT1G65630.1 | Symbols: DegP3 | DegP protease 3 | chr1:24406542-24409068
REVERSE LENGTH=1680
Length=1680
Score = 145 bits (78), Expect = 1e-33
Identities = 179/225 (80%), Gaps = 17/225 (8%)
Strand=Plus/Plus
Query 415 GGCACTGGATTTGCAATCGCGGGAAAGAAAATTCTTACGAACGCTCATGTGGTGATGGCT 474
||| |||| |||| |||| |||||||||||||||||||||| |||||||| | ||||
Sbjct 367 GGCTCTGGTTTTGTAATCTCGGGAAAGAAAATTCTTACGAATGCTCATGT--AG-TGGC- 422
Query 475 ATGAATGATCACACATTCGTGGATGT-CAAAAGACATGGCTCTCAA--ATCAAA-TACAA 530
| | |||| |||| ||| | || | |||| ||||| | |||| | |||| |||||
Sbjct 423 -T--A--ATCAAACATCCGTTAAAGTCCGAAAG-CATGG-T-TCAACCA-CAAAGTACAA 473
Query 531 AGCAAAAGTTCAAAAGATTTCACATGAATGTGATTTGGCCATCTTGGAGATCGATAGTGA 590
||||||||||||| | || ||||||||||||||||||||||||||||| |||| |||
Sbjct 474 AGCAAAAGTTCAAGCGGTTGGTCATGAATGTGATTTGGCCATCTTGGAGATTGATAATGA 533
Query 591 CGAGTTTTGGAAGGGTATGAATCCCTTGGAGCTTGGAGACATACC 635
|||||||| |||| ||||| |||||||| || || || |||||
Sbjct 534 TAAGTTTTGGGAGGGAATGAACCCCTTGGAACTCGGGGATATACC 578
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73242595155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5