BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479120
Length=1111
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16565.2 | Symbols: | alanine-tRNA ligases;nucleic acid bin... 1727 0.0
> AT3G16565.2 | Symbols: | alanine-tRNA ligases;nucleic acid binding;ligases,
forming aminoacyl-tRNA and related compounds;nucleotide
binding;ATP binding | chr3:5639839-5642737 REVERSE
LENGTH=1139
Length=1139
Score = 1727 bits (935), Expect = 0.0
Identities = 1058/1117 (95%), Gaps = 10/1117 (1%)
Strand=Plus/Plus
Query 1 GTTCACCGCGACGAAGCCGTCGGAAATCGGAATCACCATGGATTTTCCTCCGACGAAGCT 60
||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 26 GTTGACCGCGACGAATCCGTCGGAAACCGGAATCACCATGGATTTTCCTCCGACGAAGCT 85
Query 61 TGATTATCATGTAGACATGTTCAATCTTCAATCTCAATCCAGATTTATCTCCGTATTTAA 120
|||||||||||||||||||||||||||||| ||||| ||||||||| ||||| |||||||
Sbjct 86 TGATTATCATGTAGACATGTTCAATCTTCAGTCTCATTCCAGATTTCTCTCCTTATTTAA 145
Query 121 GGCGCAAGATGGGCGCATAGCTATAATACTGGACTCGACGGTGTTTCATCCACAAGGTGG 180
|||||||||||| ||||||||| ||||||| || || |||||||||||||||||||||||
Sbjct 146 GGCGCAAGATGGACGCATAGCTCTAATACTAGAATCAACGGTGTTTCATCCACAAGGTGG 205
Query 181 TGGCCAGCCGTCAGACACCGGTTTAATTGTTTTCTCCGGTTCGGATTTCAAATTTTCCGT 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 206 TGGCCAGCCGTCAGACACCGGTTTAATTGTTTTCTCCGGTTCGGATTTGAAATTTTCCGT 265
Query 241 TCAAGATGTTCGATCGAAAGACGGAATTGTTCTCCATTACGGAGTTTTCGAAGGTTCGAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 266 TCAAGATGTTCGATCGAAAGACGGAATTGTTCTCCATTACGGAGTTTTCGAAGGTTCGAA 325
Query 301 TCCTGAGAGTGGAATGGATATTGAGAAAGAGAAAGAAGTTTACTTAATTGTTGATGAATC 360
|||||| |||||||| |||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct 326 TCCTGAAAGTGGAATTGATAGTGAGAAAGGGAAAGAAGTTTACTTAACTGTTGATGAATC 385
Query 361 AAGGCGTAAACTCAATTCCAGGTTGCACTCAGGTGGACATTTGCTAGATTTGTGTATGCA 420
|||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||
Sbjct 386 AAGGCGTAAACTCAATTCCAGGTTGCACTCAGCTGGACACTTGCTAGATATGTGTATGCA 445
Query 421 GAAAGTTGGGTTAGGGCATTTGGAGCCTGGAAAAGGGTACCATTTTCCGGACGGTCCATT 480
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 446 GAAAGTTGGGTTAGGACATTTGGAGCCTGGAAAAGGGTACCATTTTCCTGACGGTCCTTT 505
Query 481 TGTAGAATACAAAGGAAGCGTTCCACAAGG-TGAGATGGCA-GAGAAGCAGAAAGAGTTG 538
||| ||||||||||||||||| |||| ||| ||| | || | ||||||||||||||||
Sbjct 506 TGTGGAATACAAAGGAAGCGTCCCAC-AGGAGGAG-TTTCAGGTGAAGCAGAAAGAGTTG 563
Query 539 GAGGCAGAAGCTAATGACCTGATAACCAAAGGAGGAAAGGTTTATGCTGCTATATTACCC 598
|||||||||||||| || |||||| ||||||||||||||||||||||||||||||| |||
Sbjct 564 GAGGCAGAAGCTAACGAACTGATATCCAAAGGAGGAAAGGTTTATGCTGCTATATTGCCC 623
Query 599 TATGAAGAGGCATCTGTGCTCTGTGGTGGCAATCTTCCTGATTATATTTCCAAGGGCAGC 658
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 624 TATGAAGAGGCATCTGTGCTCTGTGGTGGCAGTCTTCCTGATTATATTTCCAAGGGCAGC 683
Query 659 ACTCCCCGGATCATAAAATTAGGTGACAGCCCCGGGTGTCCGTGTGGTGGAACCCATGTC 718
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 684 ACTCCCCGGATCATAAAATTAGGTGACAGCCCCGGGTGTCCATGTGGTGGAACCCATGTC 743
Query 719 TCCGATTTATCTGATATCAT-AGCCATGAAGGTCACACAGATGAGAACAAAGAAAGGAAT 777
||| ||||||| |||||||| || ||||||| ||||||||||||||||||||||||||||
Sbjct 744 TCCAATTTATCCGATATCATAAG-CATGAAGATCACACAGATGAGAACAAAGAAAGGAAT 802
Query 778 AACGAAAGTTTTCTACAGCATTGCATCTTGATACTCTTATGGGTTCCAGTTTCTATACGG 837
|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 803 GACGAAAGTTTTCTACACCATTGCATCTTGAAACTCTTATGGGTTCCAGTTTCTATACGG 862
Query 838 TAGATATACAATAAGTCAAGGAAGGGAATGATAGTGAGGACGACTGTTTTCATCAGTTGG 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 863 TAGATATACAATAAGTCAAGGAAGGGAATGATAGTGAGGACGACTGTTTTCATCAGTTGG 922
Query 898 CTTCAACAGCAAGCAGCTTCTCCTGTGC-TCAACAGCCATAAATTTGTATTTGTGGGTAT 956
|||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||
Sbjct 923 CTTCAACAGCAAGCAGCTTCTCCTGTGCCTCAACAGCCACAAATCAGTATTTGTGGGTAT 982
Query 957 TTATCAATCTCTTAAACGACTCTCTCTATCATTGATAAGTCGTATATGATAT--GATATT 1014
||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 983 TTATCAATCTCTTAAACGACTCTCTCTATTATTGATAAGTCGTATATGATATATGATATT 1042
Query 1015 GATGTGATATTATCTTCCACTCAGCCTCTTAATTAGTATTACTATATTGACTCTTTGGTA 1074
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 1043 GATGTGATATTTTCTTCCACTCAGCCTCTTAATTAGTATTAATATATTGACTCTT-GGTA 1101
Query 1075 TTGTAGAATCGTACCGGACATTTGGTCCTAGATTTTT 1111
||||||||||||||||| |||||||||||||||||||
Sbjct 1102 TTGTAGAATCGTACCGGTCATTTGGTCCTAGATTTTT 1138
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54467591325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5