BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479123
Length=1338
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16580.1 | Symbols: | F-box and associated interaction doma... 1690 0.0
AT5G36660.1 | Symbols: | transposable element gene | chr5:1439... 451 7e-126
AT5G36737.1 | Symbols: | transposable element gene | chr5:1445... 451 7e-126
AT2G14710.1 | Symbols: | F-box family protein | chr2:6298679-6... 388 6e-107
> AT3G16580.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:5647376-5648746 REVERSE LENGTH=1371
Length=1371
Score = 1690 bits (915), Expect = 0.0
Identities = 1204/1337 (90%), Gaps = 46/1337 (3%)
Strand=Plus/Plus
Query 19 CTTCCATGGGAGTTAATTGAAGAGATACTTTCTCGTGTCCCACCAGAATCTCTTCTTCGC 78
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 64 CTTCCATGGGAGTTGATTGAAGAGATACTCTCTCGTGTCCCACCAGAATCTCTTCTTCGC 123
Query 79 TTCAAAACCGTATCAAAACAATGGAACGCTCTCTT-CGACGACAAGACGTTCATCAACAA 137
|||||||||||||| |||||||||||||||||||| || ||| |||||||||||||| ||
Sbjct 124 TTCAAAACCGTATCGAAACAATGGAACGCTCTCTTCCG-CGATAAGACGTTCATCAATAA 182
Query 138 CCACAAGACGACGTTTCGATTCATCTTAGCAACCAAATCCAAGATTTATTCGGTAAGCAT 197
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 CCACAAGATGACGTTTCGATTCATCTTAGCAACCAAATCCAAGATTTATTCGGTAAGCAT 242
Query 198 CGATCCCAAGATAGCGGTGTGTGAGTTAACCTTAGATATTCCCGGTCTAGAATCTC---A 254
|||||||||||||| ||| |||||||||||||||||||||||||| ||||||||| |
Sbjct 243 CGATCCCAAGATAGTTGTGCGTGAGTTAACCTTAGATATTCCCGGTTTAGAATCTCATGA 302
Query 255 GATACTTAAAAGCTTGGTTGATGGCAATGAGTTGTTGCTATGTGACATGGAGAAAGGAGC 314
||||| ||||| ||||||||| || || |||| || ||||||||||||||||||||||
Sbjct 303 GATACCTAAAAAATTGGTTGATTGCGATAAGTTATTACTATGTGACATGGAGAAAGGAGT 362
Query 315 TGTGGTTTGGAACCCGTGGCTGAGACATAGTAGATGGATCGACCAGGATTCAAACCACAC 374
|||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 363 TGTGCTTTGGAACCCGTGGCTGAGACATAGTACATGGATCGACCAGGGTTCAAACCACAC 422
Query 375 TAAG-AGGGAGTCATATGGCTTAGGATACAACAATAAGGGGAGTTACAAGATCTTCGCTG 433
| | | |||||| |||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 423 T-CGAATGGAGTCTTATGGCATAGGATACAACAATAAGGGGAGTTACAAGATCTTTGCTT 481
Query 434 CTTGTGATCGGAAGGAAAACCCCAACCAGAGATTGTTGACAATCCGTGACTTTGCCTCTG 493
|||||||||||||||||||| || |||||||||||||||||||| ||||| ||||||||
Sbjct 482 TTTGTGATCGGAAGGAAAACCACACCCAGAGATTGTTGACAATCCATGACTCTGCCTCTG 541
Query 494 ATGCGTGGAAAGACCGCGAGTCTGGAGATAATAGTCA-GCAAGTAA-AACCTG-T--TAA 548
|||||||||||||||||||| || ||||||||||| | || || || || | |||
Sbjct 542 ATGCGTGGAAAGACCGCGAGCCTATTGATAATAGTCAGGGAA--AACAAATTGTTCATAA 599
Query 549 -AT-TACACAGAAAA--ACTGGTGTATCGTTGAATGGAAATTTGTATTTGGTTACTTATT 604
|| ||||| |||| | ||||||||| |||||||||||||||||||||||||||||||
Sbjct 600 CATATACAC-TAAAATTAGTGGTGTATCATTGAATGGAAATTTGTATTTGGTTACTTATT 658
Query 605 ATGAAAAGACTGATCTTGTGTACCACCTAACTAAAATCAATTCTTCGAGCGAAAGCATTG 664
||||| ||||||||| ||||||||||||| | ||||||||||||||||||||||| | |
Sbjct 659 TTGAAACGACTGATCTCGTGTACCACCTAATTGAAATCAATTCTTCGAGCGAAAGCGTCG 718
Query 665 TGATA-TTTTGTGATCTACCATGTGGGACGACGAACTTTGATAAGGATGCTCTT-GTCCT 722
||| | |||||||||||||||||||||||| |||||||| |||||||||| || |||||
Sbjct 719 TGA-AGTTTTGTGATCTACCATGTGGGACGTCGAACTTTCTTAAGGATGCT-TTCGTCCT 776
Query 723 TCGGGTTTTCGAGGGAGATCGATTTTCATTGTTAAAGCAATGCCATGCAACAAAGAAGAT 782
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TAGGGTTTTCGAGGGAGATCGATTTTCATTGTTAAAGCAATGCCATGCAACAAAGAAGAT 836
Query 783 TGAGCTTTGGGTGAGCAAGTACAAGATTAACAATAATCTTGATCGTGAAGATGTGGAATG 842
|||| ||||||||||||||||||||||||| |||||||||||| | | |||||||||||
Sbjct 837 TGAGATTTGGGTGAGCAAGTACAAGATTAATAATAATCTTGATAG--A-GATGTGGAATG 893
Query 843 GATAAAGTTCATGGAACTGTCAAGTCCTAACTTGCCGGATTTAGTAGACGGATCCAACTC 902
|||||||||||||||| | ||||||||||||||||||||||||||||| |||| | ||||
Sbjct 894 GATAAAGTTCATGGAAGTTTCAAGTCCTAACTTGCCGGATTTAGTAGATGGATTCGACTC 953
Query 903 TCAGCCAAGTTACTTTATTGGAGATAAAAGGCTTGTCGTGTGCTCGTGTGACGAAACTGG 962
|||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||
Sbjct 954 TCAGCCAAGTTACTTTATTGAAGATAAAAGGCTCGTCGTGTGCTCGTGCAACGAAACTGG 1013
Query 963 TCGGGTTTGGATCTATGTTTTgggggggAATAAGTTGATCAGTAAAACTCAAATAGATTC 1022
||||| ||||||||||||||| || | |||||||||||||||||||||||||| |||||
Sbjct 1014 TCGGGCTTGGATCTATGTTTTCGGAGAAAATAAGTTGATCAGTAAAACTCAAATTGATTC 1073
Query 1023 TGTGGTGGATCTTTGGCCTTCGCACTGTACCTTTATTCCCAGTTTGGTACCGGTTCCTCT 1082
||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1074 TGTGGTGGATCTTTGGCCTTCACACTGGACCTTTATTCCCAGTTTGGTACCGGTTCCTCG 1133
Query 1083 AGCTCAAAGAGAAGAACCAGCAGAATTACAAGTTTGATTTTATTTACAGTTT-GTCTTCT 1141
|||||||||||||||||||||||||||||||||||||||||| ||||| ||| | |||||
Sbjct 1134 AGCTCAAAGAGAAGAACCAGCAGAATTACAAGTTTGATTTTAGTTACATTTTAG-CTTCT 1192
Query 1142 TGTTTGGTTGTTGAGGAAGCTAAATTTTATTTGGATTTCGGTGTTTTTATTCACAAACCA 1201
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1193 TGTTTGGTTGTTGAGGAAGCTAAATTTTATTTGGATTTCAGTATTTTTATTCACAAACCA 1252
Query 1202 TCTTCTTTGTTGCAACTATAGATTTTTGCTAAGTGATAAATCTCCCTTTCTTTGTTTTGC 1261
||||||||||||| ||| ||| | | | ||| |||||||||||||||||||
Sbjct 1253 TCTTCTTTGTTGCTG--ATA-ATT---G--A--T--TAA-TCTCCCTTTCTTTGTTTTG- 1298
Query 1262 TAGTTTCTTTTGGCAAAATAAATTCTTAATTATGtttttttttttATGAAAAATCTAGAG 1321
||| |||||||||||||||||||||||||| |||| | ||| | || ||||||||||
Sbjct 1299 TAGCTTCTTTTGGCAAAATAAATTCTTAATAATGTATCCTTT---A-GATAAATCTAGAG 1354
Query 1322 AGAATGTTTAAGGACTC 1338
|||||||||||||||||
Sbjct 1355 AGAATGTTTAAGGACTC 1371
> AT5G36660.1 | Symbols: | transposable element gene | chr5:14396688-14399025
FORWARD LENGTH=2338
Length=2338
Score = 451 bits (244), Expect = 7e-126
Identities = 590/746 (79%), Gaps = 68/746 (9%)
Strand=Plus/Plus
Query 99 ATGGAACGCTCTCTTCGACGACAAGACGTTCATCAACAACCACAAGACGACGTTTCGATT 158
|||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 1 ATGGAACGCTCTCTTCAACGACAAGACGTTCATCAACAACCACAAGACAACGTATCGATT 60
Query 159 CATCTTAGCAACCAAATCCAAGATTTATTCGGTAAGCAT-CGATCCCAAGATAGCGGTGT 217
||||||| ||||||||| ||||||||||||||||||||| | |||| ||||||| | |
Sbjct 61 CATCTTAACAACCAAATTCAAGATTTATTCGGTAAGCATTC-ATCCGAAGATAGAAATAT 119
Query 218 GTGAGTTAACCTTAGATATTCCCGGTCTAGAATCTCAGATACTTAAAAGCTTGGTTGATG 277
||| ||||||||||||||||| ||| ||||||| ||||||| ||||| | |||| |||
Sbjct 120 ATGAATTAACCTTAGATATTCCTGGTTTAGAATCCCAGATACCTAAAAACATGGTAGAT- 178
Query 278 GCAATGAGTTGTTGCTATGT-GACATGGAGAAAGGAGCTGTGGTTTGGAACCCGTGGCT- 335
||| ||| ||| || | |||||||||||||||||||||||||||||| || ||
Sbjct 179 ----TGA-TTG---CTACGTTG-CATGGAGAAAGGAGCTGTGGTTTGGAACCCATG-CTT 228
Query 336 GAGACATAGTAGATGGATCGACCAGGATTCAAACCACACTAAGAGGGAGTCATATGGCTT 395
|||||| ||| ||| |||||| || |||| | |||| ||| | | ||| || |||||| |
Sbjct 229 GAGACAGAGTGGATAGATCGAGCAAGATTTACACCAAACTCA-ATGGAATCCTATGGCAT 287
Query 396 AGGATACAACAATAAGGGGAGTTACAAGATC-TTCGCTGCTTGT-GATCGGAAGGAAAAC 453
||||||||||||||||||||||||||||||| || |||| |||| | || ||||||| |
Sbjct 288 AGGATACAACAATAAGGGGAGTTACAAGATCATT-GCTGGTTGTCG-TCTGAAGGAACAT 345
Query 454 CCCAACCAGAGA--TTGTTGACAATCCGTGACTTTGCCTCTGATGCGTGGAAAGACCGC- 510
|||| | | ||| |||| |||||| | |||||||||||| |||| |||||| ||| |
Sbjct 346 CCCA-CAA-AGACCTTGTGGACAATGCATGACTTTGCCTCCAATGCTTGGAAATACCTCA 403
Query 511 -G--AGT--CTGG-AGA-TAATAGTCAGCAAGTAAAACCTGTTAAATTACACAGAAAAAC 563
| ||| |||| || |||||||||| ||| |||| | | | |||| | || | |
Sbjct 404 AGTCAGTATCTGGTAGTGTAATAGTCAGGAAGGAAAAACGGCTGAATTG-A-AGTA---C 458
Query 564 TGGTGTATCGTTGAATGGAAATT-TGTATTTGGTTACTTATTATGAAAAGACTGATCTTG 622
| | | || | || |||||| || || | |||| ||||||||||
Sbjct 459 TCACC-A-C----AA-G----TTGTGTATTA--TT--TT-TGATGACAAGACTGATCCCA 502
Query 623 TGTACCACCTAAC-TA-A-AA-T-CAATTCTTCGAGCGAAAGCATTGTGATATTTTGTGA 677
||||| |||| | || | || | |||||| || || ||| | || | | ||||||| |
Sbjct 503 TGTAC-ACCTGCCCTATATAAATTCAATTCCTCCAGGGAATTCTTTTTCAGATTTTGTCA 561
Query 678 TCTACCATGTGGGACGAC-GAACTTT-GATAAGGATGCTCTTGTCCTTC-GGGTTT-TCG 733
|||||||||||| |||| || || | | ||||||||||||||| || | |||||| | |
Sbjct 562 TCTACCATGTGGAACGATAGA-CTATCG-TAAGGATGCTCTTGTACT-CAGGGTTTAT-G 617
Query 734 AGGGAGATCGATTTTCATTGTTAAAGCAATGCCATGCAACAAAGAAGATTGAGCTTTGGG 793
|||| |||| ||||||||||||||| ||||||||||||||||||||||||||| | ||||
Sbjct 618 AGGGGGATCAATTTTCATTGTTAAATCAATGCCATGCAACAAAGAAGATTGAGGTCTGGG 677
Query 794 TGAGCAAGTACAAGATTAACAATAAT 819
||||||||||||||||||| ||||||
Sbjct 678 TGAGCAAGTACAAGATTAATAATAAT 703
> AT5G36737.1 | Symbols: | transposable element gene | chr5:14455987-14458324
FORWARD LENGTH=2338
Length=2338
Score = 451 bits (244), Expect = 7e-126
Identities = 590/746 (79%), Gaps = 68/746 (9%)
Strand=Plus/Plus
Query 99 ATGGAACGCTCTCTTCGACGACAAGACGTTCATCAACAACCACAAGACGACGTTTCGATT 158
|||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 1 ATGGAACGCTCTCTTCAACGACAAGACGTTCATCAACAACCACAAGACAACGTATCGATT 60
Query 159 CATCTTAGCAACCAAATCCAAGATTTATTCGGTAAGCAT-CGATCCCAAGATAGCGGTGT 217
||||||| ||||||||| ||||||||||||||||||||| | |||| ||||||| | |
Sbjct 61 CATCTTAACAACCAAATTCAAGATTTATTCGGTAAGCATTC-ATCCGAAGATAGAAATAT 119
Query 218 GTGAGTTAACCTTAGATATTCCCGGTCTAGAATCTCAGATACTTAAAAGCTTGGTTGATG 277
||| ||||||||||||||||| ||| ||||||| ||||||| ||||| | |||| |||
Sbjct 120 ATGAATTAACCTTAGATATTCCTGGTTTAGAATCCCAGATACCTAAAAACATGGTAGAT- 178
Query 278 GCAATGAGTTGTTGCTATGT-GACATGGAGAAAGGAGCTGTGGTTTGGAACCCGTGGCT- 335
||| ||| ||| || | |||||||||||||||||||||||||||||| || ||
Sbjct 179 ----TGA-TTG---CTACGTTG-CATGGAGAAAGGAGCTGTGGTTTGGAACCCATG-CTT 228
Query 336 GAGACATAGTAGATGGATCGACCAGGATTCAAACCACACTAAGAGGGAGTCATATGGCTT 395
|||||| ||| ||| |||||| || |||| | |||| ||| | | ||| || |||||| |
Sbjct 229 GAGACAGAGTGGATAGATCGAGCAAGATTTACACCAAACTCA-ATGGAATCCTATGGCAT 287
Query 396 AGGATACAACAATAAGGGGAGTTACAAGATC-TTCGCTGCTTGT-GATCGGAAGGAAAAC 453
||||||||||||||||||||||||||||||| || |||| |||| | || ||||||| |
Sbjct 288 AGGATACAACAATAAGGGGAGTTACAAGATCATT-GCTGGTTGTCG-TCTGAAGGAACAT 345
Query 454 CCCAACCAGAGA--TTGTTGACAATCCGTGACTTTGCCTCTGATGCGTGGAAAGACCGC- 510
|||| | | ||| |||| |||||| | |||||||||||| |||| |||||| ||| |
Sbjct 346 CCCA-CAA-AGACCTTGTGGACAATGCATGACTTTGCCTCCAATGCTTGGAAATACCTCA 403
Query 511 -G--AGT--CTGG-AGA-TAATAGTCAGCAAGTAAAACCTGTTAAATTACACAGAAAAAC 563
| ||| |||| || |||||||||| ||| |||| | | | |||| | || | |
Sbjct 404 AGTCAGTATCTGGTAGTGTAATAGTCAGGAAGGAAAAACGGCTGAATTG-A-AGTA---C 458
Query 564 TGGTGTATCGTTGAATGGAAATT-TGTATTTGGTTACTTATTATGAAAAGACTGATCTTG 622
| | | || | || |||||| || || | |||| ||||||||||
Sbjct 459 TCACC-A-C----AA-G----TTGTGTATTA--TT--TT-TGATGACAAGACTGATCCCA 502
Query 623 TGTACCACCTAAC-TA-A-AA-T-CAATTCTTCGAGCGAAAGCATTGTGATATTTTGTGA 677
||||| |||| | || | || | |||||| || || ||| | || | | ||||||| |
Sbjct 503 TGTAC-ACCTGCCCTATATAAATTCAATTCCTCCAGGGAATTCTTTTTCAGATTTTGTCA 561
Query 678 TCTACCATGTGGGACGAC-GAACTTT-GATAAGGATGCTCTTGTCCTTC-GGGTTT-TCG 733
|||||||||||| |||| || || | | ||||||||||||||| || | |||||| | |
Sbjct 562 TCTACCATGTGGAACGATAGA-CTATCG-TAAGGATGCTCTTGTACT-CAGGGTTTAT-G 617
Query 734 AGGGAGATCGATTTTCATTGTTAAAGCAATGCCATGCAACAAAGAAGATTGAGCTTTGGG 793
|||| |||| ||||||||||||||| ||||||||||||||||||||||||||| | ||||
Sbjct 618 AGGGGGATCAATTTTCATTGTTAAATCAATGCCATGCAACAAAGAAGATTGAGGTCTGGG 677
Query 794 TGAGCAAGTACAAGATTAACAATAAT 819
||||||||||||||||||| ||||||
Sbjct 678 TGAGCAAGTACAAGATTAATAATAAT 703
> AT2G14710.1 | Symbols: | F-box family protein | chr2:6298679-6300150
FORWARD LENGTH=1472
Length=1472
Score = 388 bits (210), Expect = 6e-107
Identities = 298/340 (88%), Gaps = 8/340 (2%)
Strand=Plus/Plus
Query 19 CTTCCATGGGAGTTAATTGAAGAGATACTTTCTCGTGTCCCACC-AGAATCTCTTC-TTC 76
|||||||||||||| |||||||||||||| |||||||||||||| | |||||| || |||
Sbjct 276 CTTCCATGGGAGTTGATTGAAGAGATACTCTCTCGTGTCCCACCTA-AATCTC-TCGTTC 333
Query 77 GCTTCAAAACCGTATCAAAACAATGGAACGCTCTCTTCGACGACAAGACGTTCATCAACA 136
|||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 334 GCTTCAGAACCGTATCGAAACAATGGAACGCTCTTTTCGACGACAAGACGTTCATCAACA 393
Query 137 ACCACAAGACGACGTTTCGATTCATCTTAGCAACCAAATCCAAGATTTATTCGGTAAGCA 196
||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 394 ACCACAAGATGACGTTTCGTTTTATCTTAGCAACCAAATCCAAGATTTATTCGGTAAGCA 453
Query 197 TCGATCCCAAGATAGCGGTGTGTGAGTTAACCTTAGATATTCCCGGTCTAGAATCTCAG- 255
|||||||| ||||| ||| |||||||| |||||| |||||| ||| |||||||| |
Sbjct 454 TCGATCCCGTGATAGTGGTACGTGAGTTACCCTTAGGTATTCCAGGTTTAGAATCTTTGG 513
Query 256 ATACTTAA-AAGCTTGGTTGATGGCAATGAGTTGTTGCTATGTGACATGGAGAAAGGAGC 314
| |||||| || |||||||||| |||||||||||||| |||||| | | | || || ||
Sbjct 514 A-ACTTAATAA-CTTGGTTGATTGCAATGAGTTGTTGGTATGTGTTAAGAACAATGGTGC 571
Query 315 TGTGGTTTGGAACCCGTGGCTGAGACATAGTAGATGGATC 354
|| ||||||||||| ||| || |||| ||||||||||||
Sbjct 572 GGTTGTTTGGAACCCTTGGTTGGGACAGAGTAGATGGATC 611
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65863115040
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5